Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04425

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04420 and BWI76_RS04425 are separated by 15 nucleotidesBWI76_RS04425 and BWI76_RS04430 are separated by 160 nucleotides BWI76_RS04420: BWI76_RS04420 - oxaloacetate decarboxylase, at 912,522 to 914,288 _RS04420 BWI76_RS04425: BWI76_RS04425 - oxaloacetate decarboxylase subunit gamma, at 914,304 to 914,555 _RS04425 BWI76_RS04430: BWI76_RS04430 - citrate carrier protein, at 914,716 to 916,056 _RS04430 Position (kb) 914 915Strain fitness (log2 ratio) -1 0 1at 913.533 kb on - strand, within BWI76_RS04420at 913.647 kb on - strand, within BWI76_RS04420at 913.825 kb on - strand, within BWI76_RS04420at 913.835 kb on - strand, within BWI76_RS04420at 913.863 kb on - strand, within BWI76_RS04420at 914.101 kb on + strandat 914.511 kb on + strand, within BWI76_RS04425at 914.540 kb on - strandat 914.630 kb on - strandat 914.820 kb on - strandat 914.820 kb on - strandat 914.836 kb on - strandat 914.861 kb on + strand, within BWI76_RS04430at 914.866 kb on - strand, within BWI76_RS04430at 914.868 kb on + strand, within BWI76_RS04430at 915.014 kb on - strand, within BWI76_RS04430at 915.019 kb on - strand, within BWI76_RS04430at 915.121 kb on + strand, within BWI76_RS04430at 915.129 kb on - strand, within BWI76_RS04430at 915.136 kb on + strand, within BWI76_RS04430at 915.214 kb on - strand, within BWI76_RS04430at 915.244 kb on + strandat 915.324 kb on + strand, within BWI76_RS04430at 915.342 kb on - strand, within BWI76_RS04430at 915.389 kb on + strand, within BWI76_RS04430at 915.397 kb on - strand, within BWI76_RS04430at 915.400 kb on + strand, within BWI76_RS04430at 915.406 kb on + strand, within BWI76_RS04430at 915.411 kb on + strandat 915.423 kb on + strand, within BWI76_RS04430at 915.423 kb on + strand, within BWI76_RS04430at 915.425 kb on + strand, within BWI76_RS04430at 915.430 kb on + strand, within BWI76_RS04430at 915.431 kb on - strand, within BWI76_RS04430at 915.431 kb on - strand, within BWI76_RS04430at 915.438 kb on - strand, within BWI76_RS04430at 915.478 kb on + strand, within BWI76_RS04430at 915.497 kb on - strand, within BWI76_RS04430at 915.497 kb on - strand, within BWI76_RS04430at 915.531 kb on - strand, within BWI76_RS04430at 915.532 kb on - strand, within BWI76_RS04430at 915.532 kb on - strand, within BWI76_RS04430at 915.534 kb on - strand, within BWI76_RS04430

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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913,533 - BWI76_RS04420 0.57 -1.2
913,647 - BWI76_RS04420 0.64 +0.7
913,825 - BWI76_RS04420 0.74 -0.5
913,835 - BWI76_RS04420 0.74 -0.7
913,863 - BWI76_RS04420 0.76 +0.4
914,101 + -0.3
914,511 + BWI76_RS04425 0.82 +0.4
914,540 - -0.8
914,630 - -1.0
914,820 - -0.9
914,820 - -0.8
914,836 - -0.0
914,861 + BWI76_RS04430 0.11 +0.0
914,866 - BWI76_RS04430 0.11 +0.7
914,868 + BWI76_RS04430 0.11 -0.5
915,014 - BWI76_RS04430 0.22 -0.7
915,019 - BWI76_RS04430 0.23 -0.2
915,121 + BWI76_RS04430 0.30 -0.6
915,129 - BWI76_RS04430 0.31 -0.1
915,136 + BWI76_RS04430 0.31 -0.2
915,214 - BWI76_RS04430 0.37 -1.4
915,244 + +1.5
915,324 + BWI76_RS04430 0.45 -0.4
915,342 - BWI76_RS04430 0.47 +0.2
915,389 + BWI76_RS04430 0.50 -0.5
915,397 - BWI76_RS04430 0.51 -0.3
915,400 + BWI76_RS04430 0.51 -0.0
915,406 + BWI76_RS04430 0.51 +0.3
915,411 + -0.1
915,423 + BWI76_RS04430 0.53 -0.2
915,423 + BWI76_RS04430 0.53 +0.0
915,425 + BWI76_RS04430 0.53 -0.4
915,430 + BWI76_RS04430 0.53 +1.5
915,431 - BWI76_RS04430 0.53 -0.5
915,431 - BWI76_RS04430 0.53 -0.5
915,438 - BWI76_RS04430 0.54 -0.5
915,478 + BWI76_RS04430 0.57 +0.3
915,497 - BWI76_RS04430 0.58 -0.2
915,497 - BWI76_RS04430 0.58 -0.9
915,531 - BWI76_RS04430 0.61 -0.8
915,532 - BWI76_RS04430 0.61 +1.5
915,532 - BWI76_RS04430 0.61 -0.2
915,534 - BWI76_RS04430 0.61 -0.3

Or see this region's nucleotide sequence