Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19470

Experiment: Recovery broth with Amikacin di0.7 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Amikacin di0.7 mM
2,151,435	-		BBR_RS19465	0.86	+0.2
2,151,483	-		BBR_RS19465	0.88	-1.4
2,151,495	-		BBR_RS19465	0.88	-1.2
2,151,593	-				-1.9
2,151,627	-				-0.0
2,151,627	-				-1.3
2,151,627	-				-1.3
2,151,708	-				-0.4
2,151,708	-				-0.7
2,151,899	-				-2.7
2,152,115	+				+0.2
2,152,115	+				-0.9
2,152,115	+				+0.5
2,152,123	-				+0.3
2,152,123	-				+1.0
2,152,125	+				-0.4
2,152,131	+				-0.2
2,152,131	+				+1.9
2,152,136	+				+0.1
2,152,137	+				-0.2
2,152,137	+				+0.2
2,152,139	-				-0.9
2,152,142	+				-0.5
2,152,160	-				+0.0
2,152,163	+				+1.1
2,152,167	+				-0.1
2,152,168	+				-0.2
2,152,171	-				+0.7
2,152,171	-				+0.3
2,152,171	-				-0.2
2,152,184	+				-0.2
2,152,186	+				-0.2
2,152,187	+				-1.1
2,152,187	+				-0.1
2,152,191	+				-2.0
2,152,192	-				+0.6
2,152,213	+				-1.2
2,152,214	+				+0.8
2,152,217	+				-0.2
2,152,220	-				+1.0
2,152,220	-				+0.5
2,152,221	-				-0.5
2,152,222	-				+0.0
2,152,237	-				-0.1
2,152,239	+				+1.0
2,152,239	+				-0.8
2,152,259	-				-0.5
2,152,259	-				-0.1
2,152,263	-				+0.3
2,152,273	+				+0.0
2,152,274	+				-0.6
2,152,281	-				-0.8
2,152,281	-				-0.1
2,152,281	-				+0.6
2,152,282	-				+0.1
2,152,306	-				+0.0
2,152,320	-				-0.7
2,152,344	-				+0.5
2,152,370	-				+0.0
2,152,370	-				-0.8
2,152,385	-				+0.1
2,152,389	+				-0.1
2,152,430	-		BBR_RS19470	0.11	-0.0
2,152,442	-		BBR_RS19470	0.12	+0.0
2,152,444	+		BBR_RS19470	0.12	-0.3
2,152,452	-		BBR_RS19470	0.13	-0.4
2,152,452	-		BBR_RS19470	0.13	-0.9
2,152,452	-		BBR_RS19470	0.13	-0.2
2,152,454	+		BBR_RS19470	0.13	-0.7
2,152,454	+		BBR_RS19470	0.13	-0.0
2,152,457	-		BBR_RS19470	0.13	+0.1
2,152,462	-		BBR_RS19470	0.13	-0.5
2,152,489	+		BBR_RS19470	0.16	-0.2
2,152,527	+		BBR_RS19470	0.19	-0.2
2,152,527	+		BBR_RS19470	0.19	+0.7
2,152,527	+		BBR_RS19470	0.19	+0.1
2,152,535	-		BBR_RS19470	0.19	-0.0
2,152,535	-		BBR_RS19470	0.19	-0.3
2,152,535	-		BBR_RS19470	0.19	+0.2
2,152,535	-		BBR_RS19470	0.19	-2.5
2,152,536	+		BBR_RS19470	0.20	-0.3
2,152,544	-		BBR_RS19470	0.20	+1.1
2,152,544	-		BBR_RS19470	0.20	+0.3
2,152,544	-		BBR_RS19470	0.20	+0.2
2,152,545	-		BBR_RS19470	0.20	+0.8
2,152,545	-		BBR_RS19470	0.20	-0.8
2,152,547	+		BBR_RS19470	0.20	-1.2
2,152,555	-		BBR_RS19470	0.21	+0.3
2,152,555	-		BBR_RS19470	0.21	-0.4
2,152,568	+		BBR_RS19470	0.22	-1.1
2,152,568	+		BBR_RS19470	0.22	+0.6
2,152,568	+		BBR_RS19470	0.22	+1.1
2,152,584	+		BBR_RS19470	0.24	-0.4
2,152,594	+		BBR_RS19470	0.24	+0.1
2,152,594	+		BBR_RS19470	0.24	+0.8
2,152,594	-		BBR_RS19470	0.24	-2.4
2,152,597	-		BBR_RS19470	0.25	-0.6
2,152,607	-		BBR_RS19470	0.25	+0.5
2,152,617	+		BBR_RS19470	0.26	-0.8
2,152,625	-		BBR_RS19470	0.27	-0.8
2,152,642	+		BBR_RS19470	0.28	-0.3
2,152,642	-		BBR_RS19470	0.28	-0.8
2,152,645	-		BBR_RS19470	0.29	+0.2
2,152,645	-		BBR_RS19470	0.29	-0.0
2,152,647	-		BBR_RS19470	0.29	+0.7
2,152,647	-		BBR_RS19470	0.29	+0.7
2,152,647	-		BBR_RS19470	0.29	+0.0
2,152,649	+		BBR_RS19470	0.29	+0.1
2,152,649	+		BBR_RS19470	0.29	-0.8
2,152,649	+		BBR_RS19470	0.29	+0.1
2,152,650	-		BBR_RS19470	0.29	+0.6
2,152,657	-		BBR_RS19470	0.30	+1.3
2,152,657	-		BBR_RS19470	0.30	+0.6
2,152,657	-		BBR_RS19470	0.30	-0.6
2,152,669	-		BBR_RS19470	0.31	+0.3
2,152,685	+		BBR_RS19470	0.32	+1.2
2,152,685	+		BBR_RS19470	0.32	-0.2
2,152,693	-		BBR_RS19470	0.33	-0.8
2,152,711	+		BBR_RS19470	0.34	-1.1
2,152,756	+		BBR_RS19470	0.38	+1.0
2,152,764	+		BBR_RS19470	0.38	-0.4
2,152,764	+		BBR_RS19470	0.38	-0.9
2,152,764	-		BBR_RS19470	0.38	+1.2
2,152,764	-		BBR_RS19470	0.38	-1.6
2,152,764	-		BBR_RS19470	0.38	+1.0
2,152,764	-		BBR_RS19470	0.38	-0.2
2,152,766	+		BBR_RS19470	0.39	+1.1
2,152,769	+		BBR_RS19470	0.39	-0.0
2,152,769	-		BBR_RS19470	0.39	+0.4
2,152,781	-		BBR_RS19470	0.40	+0.4
2,152,786	-		BBR_RS19470	0.40	-0.1
2,152,802	-		BBR_RS19470	0.42	-0.8
2,152,811	+		BBR_RS19470	0.42	+0.2
2,152,819	-		BBR_RS19470	0.43	-0.2
2,152,822	+		BBR_RS19470	0.43	+1.7
2,152,822	+		BBR_RS19470	0.43	+0.8
2,152,827	+		BBR_RS19470	0.44	+0.7
2,152,835	-		BBR_RS19470	0.44	+0.1
2,152,843	+		BBR_RS19470	0.45	-0.9
2,152,846	-		BBR_RS19470	0.45	+0.8
2,152,846	-		BBR_RS19470	0.45	-0.0
2,152,852	+		BBR_RS19470	0.46	+0.0
2,152,855	+		BBR_RS19470	0.46	-0.1
2,152,867	+		BBR_RS19470	0.47	+0.8
2,152,867	+		BBR_RS19470	0.47	-2.2
2,152,871	+		BBR_RS19470	0.47	+0.3
2,152,875	-		BBR_RS19470	0.48	-0.1
2,152,892	-		BBR_RS19470	0.49	-0.4
2,152,892	-		BBR_RS19470	0.49	+0.2
2,152,905	+		BBR_RS19470	0.50	+0.3
2,152,946	+		BBR_RS19470	0.54	-0.9
2,152,948	-		BBR_RS19470	0.54	+1.1
2,152,954	-		BBR_RS19470	0.54	-0.1
2,152,954	-		BBR_RS19470	0.54	-2.4
2,153,009	+		BBR_RS19470	0.59	-1.1
2,153,009	+		BBR_RS19470	0.59	+0.2
2,153,009	+		BBR_RS19470	0.59	-0.5
2,153,009	+		BBR_RS19470	0.59	+0.1
2,153,009	+		BBR_RS19470	0.59	-0.2
2,153,017	-		BBR_RS19470	0.59	-0.3
2,153,017	-		BBR_RS19470	0.59	+1.4
2,153,017	-		BBR_RS19470	0.59	+0.0
2,153,017	-		BBR_RS19470	0.59	-0.5
2,153,017	-		BBR_RS19470	0.59	+0.4
2,153,017	-		BBR_RS19470	0.59	-0.0
2,153,017	-		BBR_RS19470	0.59	-0.9
2,153,017	-		BBR_RS19470	0.59	+0.8
2,153,022	-		BBR_RS19470	0.60	+0.4
2,153,058	+		BBR_RS19470	0.63	-0.5
2,153,060	+		BBR_RS19470	0.63	+0.3
2,153,066	-		BBR_RS19470	0.64	-0.2
2,153,068	-		BBR_RS19470	0.64	+1.7
2,153,076	+		BBR_RS19470	0.64	+0.2
2,153,087	-		BBR_RS19470	0.65	-0.3
2,153,109	+		BBR_RS19470	0.67	+0.6
2,153,128	-		BBR_RS19470	0.69	-0.8
2,153,135	-		BBR_RS19470	0.69	-0.1
2,153,138	+		BBR_RS19470	0.69	+0.0
2,153,141	-		BBR_RS19470	0.70	-0.7
2,153,146	+		BBR_RS19470	0.70	+0.3
2,153,146	+		BBR_RS19470	0.70	+0.7
2,153,154	-		BBR_RS19470	0.71	+0.8
2,153,154	-		BBR_RS19470	0.71	-0.1
2,153,154	-		BBR_RS19470	0.71	+0.2
2,153,164	-		BBR_RS19470	0.72	-0.3
2,153,167	+		BBR_RS19470	0.72	+0.9
2,153,183	-		BBR_RS19470	0.73	+0.5
2,153,183	-		BBR_RS19470	0.73	-1.0
2,153,190	-		BBR_RS19470	0.74	-0.4
2,153,232	+		BBR_RS19470	0.77	-0.8
2,153,240	-		BBR_RS19470	0.78	-0.5
2,153,240	-		BBR_RS19470	0.78	+0.0
2,153,262	-		BBR_RS19470	0.80	+0.5
2,153,273	+		BBR_RS19470	0.81	+0.2
2,153,273	+		BBR_RS19470	0.81	-0.2
2,153,273	+		BBR_RS19470	0.81	+0.5
2,153,273	-		BBR_RS19470	0.81	+0.5
2,153,273	-		BBR_RS19470	0.81	-0.6
2,153,275	+		BBR_RS19470	0.81	-0.4
2,153,277	+		BBR_RS19470	0.81	+1.3
2,153,281	-		BBR_RS19470	0.81	-0.3
2,153,281	-		BBR_RS19470	0.81	+0.8
2,153,281	-		BBR_RS19470	0.81	+1.4
2,153,283	-		BBR_RS19470	0.82	+0.2
2,153,283	-		BBR_RS19470	0.82	-0.2
2,153,287	+		BBR_RS19470	0.82	+0.3
2,153,295	-		BBR_RS19470	0.83	-0.7
2,153,300	+		BBR_RS19470	0.83	-0.2
2,153,318	-		BBR_RS19470	0.84	-0.7
2,153,318	-		BBR_RS19470	0.84	-0.4
2,153,321	+		BBR_RS19470	0.85	+0.8
2,153,334	-		BBR_RS19470	0.86	+0.0
2,153,334	-		BBR_RS19470	0.86	+0.3
2,153,336	-		BBR_RS19470	0.86	+1.3
2,153,365	-		BBR_RS19470	0.88	-0.9
2,153,384	+		BBR_RS19470	0.90	-0.3
2,153,384	+		BBR_RS19470	0.90	-1.7
2,153,391	+				-0.5
2,153,392	-				+0.6
2,153,392	-				+0.1
2,153,392	-				-1.2
2,153,392	-				+0.1
2,153,392	-				+0.1
2,153,392	-				-0.3
2,153,401	+				-1.0
2,153,431	-				+0.6
2,153,464	-				-0.4
2,153,464	-				-0.8
2,153,466	+				-0.2
2,153,466	+				-1.1
2,153,466	+				-0.7
2,153,488	+				-0.4
2,153,493	+				-0.6
2,153,501	-				+1.2
2,153,501	-				-0.6
2,153,501	-				+0.1
2,153,503	+				-0.1
2,153,503	+				+0.4
2,153,503	+				-0.7
2,153,508	+				-1.6
2,153,508	+				+0.3
2,153,508	+				-0.5
2,153,510	+				-0.5
2,153,510	+				+0.5
2,153,510	+				+0.6
2,153,511	-				+1.0
2,153,513	+				-0.3
2,153,516	-				-0.2
2,153,516	-				+1.5
2,153,516	-				-0.4
2,153,516	-				-1.6
2,153,535	+				+0.0
2,153,537	+				+0.7
2,153,537	+				-0.0
2,153,537	+				-0.3
2,153,543	-				+0.3
2,153,543	-				+0.1
2,153,554	-				+0.2
2,153,572	+				+0.5
2,153,585	+				-0.2
2,153,585	+				+0.1
2,153,586	+				+0.3
2,153,593	-				+0.7
2,153,594	-				-0.0
2,153,594	-				-0.2
2,153,607	+				-0.3
2,153,620	-				+0.5
2,153,622	+				+0.0
2,153,622	+				-0.3
2,153,630	-				-1.4
2,153,630	-				+0.4
2,153,630	-				-0.3
2,153,632	+				+1.1
2,153,640	-				-1.1
2,153,709	-		BBR_RS19475	0.10	+0.7
2,153,710	+		BBR_RS19475	0.10	+0.4
2,153,710	+		BBR_RS19475	0.10	-0.1
2,153,710	+		BBR_RS19475	0.10	+0.3
2,153,718	-		BBR_RS19475	0.11	-0.4
2,153,718	-		BBR_RS19475	0.11	+1.7
2,153,718	-		BBR_RS19475	0.11	+0.9
2,153,719	+		BBR_RS19475	0.11	-0.3
2,153,719	+		BBR_RS19475	0.11	+1.0
2,153,727	-		BBR_RS19475	0.12	-0.3
2,153,727	-		BBR_RS19475	0.12	-0.4
2,153,727	-		BBR_RS19475	0.12	+0.2
2,153,727	-		BBR_RS19475	0.12	-1.5
2,153,727	-		BBR_RS19475	0.12	+0.6
2,153,727	-		BBR_RS19475	0.12	+0.2
2,153,727	-		BBR_RS19475	0.12	-0.2
2,153,732	+		BBR_RS19475	0.13	-0.2
2,153,755	+		BBR_RS19475	0.15	+0.2
2,153,755	+		BBR_RS19475	0.15	+0.6
2,153,763	-		BBR_RS19475	0.16	+0.2
2,153,777	+		BBR_RS19475	0.18	-0.0
2,153,806	+		BBR_RS19475	0.21	+0.5
2,153,821	+		BBR_RS19475	0.22	+0.2
2,153,828	+		BBR_RS19475	0.23	-0.3
2,153,828	+		BBR_RS19475	0.23	+0.8
2,153,828	+		BBR_RS19475	0.23	+0.4
2,153,836	+		BBR_RS19475	0.24	-0.0
2,153,836	+		BBR_RS19475	0.24	-0.2
2,153,836	+		BBR_RS19475	0.24	+0.1
2,153,836	-		BBR_RS19475	0.24	+0.4
2,153,838	+		BBR_RS19475	0.24	+0.1
2,153,838	+		BBR_RS19475	0.24	+0.4
2,153,838	+		BBR_RS19475	0.24	+0.2
2,153,844	-		BBR_RS19475	0.25	+0.1
2,153,845	+		BBR_RS19475	0.25	+0.1
2,153,846	-		BBR_RS19475	0.25	+2.5
2,153,852	-		BBR_RS19475	0.26	-0.4
2,153,866	+		BBR_RS19475	0.27	+0.1
2,153,867	+		BBR_RS19475	0.27	-0.1
2,153,874	-		BBR_RS19475	0.28	-0.3
2,153,876	+		BBR_RS19475	0.28	+0.3
2,153,891	-		BBR_RS19475	0.30	-0.4
2,153,895	+		BBR_RS19475	0.30	+0.1
2,153,934	-		BBR_RS19475	0.34	+1.0
2,153,963	+		BBR_RS19475	0.37	-1.0
2,153,971	-		BBR_RS19475	0.38	-0.0
2,153,971	-		BBR_RS19475	0.38	+0.1
2,153,971	-		BBR_RS19475	0.38	-0.1
2,153,971	-		BBR_RS19475	0.38	+1.1
2,153,995	-		BBR_RS19475	0.41	+0.7
2,154,021	+		BBR_RS19475	0.43	+1.4
2,154,033	+		BBR_RS19475	0.45	+0.2
2,154,033	+		BBR_RS19475	0.45	+0.2
2,154,035	+		BBR_RS19475	0.45	+0.4
2,154,035	+		BBR_RS19475	0.45	+0.1
2,154,035	+		BBR_RS19475	0.45	-0.0
2,154,035	+		BBR_RS19475	0.45	+0.1
2,154,035	+		BBR_RS19475	0.45	+0.5
2,154,037	-		BBR_RS19475	0.45	+1.2
2,154,041	-		BBR_RS19475	0.46	+0.1
2,154,041	-		BBR_RS19475	0.46	-0.5
2,154,041	-		BBR_RS19475	0.46	-0.4
2,154,041	-		BBR_RS19475	0.46	-0.6
2,154,063	+		BBR_RS19475	0.48	+0.4
2,154,063	+		BBR_RS19475	0.48	-0.1
2,154,069	+		BBR_RS19475	0.48	+0.6
2,154,071	-		BBR_RS19475	0.49	-0.3
2,154,071	-		BBR_RS19475	0.49	+0.2
2,154,074	+		BBR_RS19475	0.49	-0.3
2,154,074	+		BBR_RS19475	0.49	-0.2
2,154,074	+		BBR_RS19475	0.49	-0.3
2,154,076	+		BBR_RS19475	0.49	-0.3
2,154,122	-		BBR_RS19475	0.54	+0.9
2,154,127	+		BBR_RS19475	0.55	-0.2
2,154,127	+		BBR_RS19475	0.55	-0.5
2,154,127	+		BBR_RS19475	0.55	-0.1
2,154,129	+		BBR_RS19475	0.55	-0.2
2,154,129	+		BBR_RS19475	0.55	-0.8
2,154,132	+		BBR_RS19475	0.55	-0.8
2,154,135	-		BBR_RS19475	0.55	-0.2
2,154,135	-		BBR_RS19475	0.55	-0.4
2,154,155	+		BBR_RS19475	0.58	-0.3
2,154,162	+		BBR_RS19475	0.58	-0.1
2,154,180	+		BBR_RS19475	0.60	+0.6
2,154,184	+		BBR_RS19475	0.61	-0.0
2,154,186	-		BBR_RS19475	0.61	+0.6
2,154,194	-		BBR_RS19475	0.62	-0.2
2,154,210	-		BBR_RS19475	0.63	-0.2
2,154,236	-		BBR_RS19475	0.66	+0.3
2,154,252	-		BBR_RS19475	0.68	-0.4
2,154,256	+		BBR_RS19475	0.68	-1.5
2,154,261	+		BBR_RS19475	0.69	+0.3
2,154,266	+		BBR_RS19475	0.69	+0.5
2,154,266	+		BBR_RS19475	0.69	-0.2
2,154,266	+		BBR_RS19475	0.69	-0.4
2,154,266	+		BBR_RS19475	0.69	+0.7
2,154,266	+		BBR_RS19475	0.69	+0.0
2,154,274	-		BBR_RS19475	0.70	-0.3
2,154,274	-		BBR_RS19475	0.70	+0.3
2,154,274	-		BBR_RS19475	0.70	-0.5
2,154,274	-		BBR_RS19475	0.70	-0.3
2,154,274	-		BBR_RS19475	0.70	+0.5
2,154,274	-		BBR_RS19475	0.70	+0.3
2,154,296	-		BBR_RS19475	0.72	+3.1
2,154,304	+		BBR_RS19475	0.73	-0.2
2,154,304	+		BBR_RS19475	0.73	+0.3
2,154,314	-		BBR_RS19475	0.74	+0.7
2,154,319	-		BBR_RS19475	0.75	-0.7
2,154,327	-		BBR_RS19475	0.76	+0.1
2,154,384	-		BBR_RS19475	0.82	-0.7
2,154,386	+		BBR_RS19475	0.82	-0.1
2,154,386	+		BBR_RS19475	0.82	+0.6
2,154,386	+		BBR_RS19475	0.82	-0.8
2,154,394	+		BBR_RS19475	0.83	+0.2
2,154,394	+		BBR_RS19475	0.83	+0.1
2,154,394	+		BBR_RS19475	0.83	-0.4
2,154,394	-		BBR_RS19475	0.83	+0.4
2,154,394	-		BBR_RS19475	0.83	-0.1
2,154,394	-		BBR_RS19475	0.83	-1.2
2,154,394	-		BBR_RS19475	0.83	+0.1
2,154,402	-		BBR_RS19475	0.84	+1.1
2,154,402	-		BBR_RS19475	0.84	-0.6
2,154,402	-		BBR_RS19475	0.84	+0.1
2,154,402	-		BBR_RS19475	0.84	+0.1
2,154,439	+		BBR_RS19475	0.88	+0.7
2,154,439	+		BBR_RS19475	0.88	+0.4
2,154,439	+		BBR_RS19475	0.88	+1.3
2,154,447	-		BBR_RS19475	0.88	-0.4
2,154,447	-		BBR_RS19475	0.88	+0.1
2,154,447	-		BBR_RS19475	0.88	-0.3
2,154,447	-		BBR_RS19475	0.88	+0.3
2,154,447	-		BBR_RS19475	0.88	-1.5
2,154,457	+		BBR_RS19475	0.90	+0.2
2,154,471	+				+0.6
2,154,501	-				+0.5
2,154,505	+				+0.2