Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10675

Experiment: Recovery broth with Amikacin di0.7 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Amikacin di0.7 mM
116,129	+		BBR_RS10670	0.10	+0.1
116,129	+		BBR_RS10670	0.10	+0.2
116,137	+		BBR_RS10670	0.11	+0.4
116,137	+		BBR_RS10670	0.11	+0.3
116,137	-		BBR_RS10670	0.11	-0.8
116,145	-		BBR_RS10670	0.12	+0.1
116,145	-		BBR_RS10670	0.12	-0.0
116,158	+		BBR_RS10670	0.13	-1.1
116,158	+		BBR_RS10670	0.13	+0.5
116,158	+		BBR_RS10670	0.13	+0.4
116,166	-		BBR_RS10670	0.14	-0.4
116,177	+		BBR_RS10670	0.15	+0.6
116,178	+		BBR_RS10670	0.15	+0.9
116,183	+		BBR_RS10670	0.15	+0.1
116,186	-		BBR_RS10670	0.16	+0.7
116,188	+		BBR_RS10670	0.16	+0.4
116,188	+		BBR_RS10670	0.16	+0.5
116,189	-		BBR_RS10670	0.16	+0.4
116,191	-		BBR_RS10670	0.16	-0.2
116,191	-		BBR_RS10670	0.16	+0.1
116,191	-		BBR_RS10670	0.16	+0.8
116,212	+		BBR_RS10670	0.18	+0.6
116,225	-		BBR_RS10670	0.19	-0.8
116,227	+		BBR_RS10670	0.20	+0.8
116,228	-		BBR_RS10670	0.20	-0.1
116,235	-		BBR_RS10670	0.20	-0.4
116,247	+		BBR_RS10670	0.22	-0.1
116,247	+		BBR_RS10670	0.22	-0.9
116,247	+		BBR_RS10670	0.22	-0.3
116,247	+		BBR_RS10670	0.22	-0.7
116,247	+		BBR_RS10670	0.22	+0.1
116,248	+		BBR_RS10670	0.22	+0.2
116,251	-		BBR_RS10670	0.22	+0.1
116,252	+		BBR_RS10670	0.22	-0.0
116,255	-		BBR_RS10670	0.22	-0.2
116,255	-		BBR_RS10670	0.22	+0.1
116,255	-		BBR_RS10670	0.22	-0.3
116,255	-		BBR_RS10670	0.22	+0.7
116,255	-		BBR_RS10670	0.22	-0.2
116,255	-		BBR_RS10670	0.22	+0.2
116,255	-		BBR_RS10670	0.22	-0.2
116,255	-		BBR_RS10670	0.22	+0.4
116,255	-		BBR_RS10670	0.22	+0.7
116,255	-		BBR_RS10670	0.22	-0.2
116,260	-		BBR_RS10670	0.23	+1.1
116,270	+		BBR_RS10670	0.24	+0.7
116,270	+		BBR_RS10670	0.24	-0.5
116,277	+		BBR_RS10670	0.25	+0.6
116,277	+		BBR_RS10670	0.25	+0.2
116,294	-		BBR_RS10670	0.26	-3.2
116,304	-		BBR_RS10670	0.27	+0.3
116,304	-		BBR_RS10670	0.27	+0.7
116,306	+		BBR_RS10670	0.27	-0.4
116,309	-		BBR_RS10670	0.28	+0.3
116,314	-		BBR_RS10670	0.28	-0.3
116,318	-		BBR_RS10670	0.29	+0.9
116,323	-		BBR_RS10670	0.29	+1.2
116,330	+		BBR_RS10670	0.30	+0.2
116,330	+		BBR_RS10670	0.30	+1.1
116,330	+		BBR_RS10670	0.30	-0.7
116,330	+		BBR_RS10670	0.30	-0.2
116,335	+		BBR_RS10670	0.30	-0.3
116,345	+		BBR_RS10670	0.31	+0.5
116,346	+		BBR_RS10670	0.31	+1.2
116,350	+		BBR_RS10670	0.32	+0.3
116,350	+		BBR_RS10670	0.32	-0.3
116,350	+		BBR_RS10670	0.32	-0.1
116,353	-		BBR_RS10670	0.32	+0.3
116,353	-		BBR_RS10670	0.32	-0.1
116,358	-		BBR_RS10670	0.33	-0.7
116,358	-		BBR_RS10670	0.33	+0.2
116,358	-		BBR_RS10670	0.33	-0.3
116,358	-		BBR_RS10670	0.33	-0.2
116,358	-		BBR_RS10670	0.33	+0.1
116,358	-		BBR_RS10670	0.33	+0.0
116,358	-		BBR_RS10670	0.33	-0.7
116,358	-		BBR_RS10670	0.33	+0.3
116,363	-		BBR_RS10670	0.33	+0.3
116,369	-		BBR_RS10670	0.34	-0.0
116,375	+		BBR_RS10670	0.34	+0.5
116,382	+		BBR_RS10670	0.35	+0.4
116,383	+		BBR_RS10670	0.35	-0.2
116,383	+		BBR_RS10670	0.35	+0.0
116,383	-		BBR_RS10670	0.35	+0.1
116,383	-		BBR_RS10670	0.35	+0.3
116,390	+		BBR_RS10670	0.36	+0.3
116,399	-		BBR_RS10670	0.37	-0.2
116,422	+		BBR_RS10670	0.39	+0.3
116,422	+		BBR_RS10670	0.39	+0.4
116,422	+		BBR_RS10670	0.39	-0.8
116,437	+		BBR_RS10670	0.40	-0.2
116,440	-		BBR_RS10670	0.41	-2.1
116,457	-		BBR_RS10670	0.42	+0.2
116,465	+		BBR_RS10670	0.43	+0.4
116,470	+		BBR_RS10670	0.44	+0.4
116,473	-		BBR_RS10670	0.44	+0.7
116,476	+		BBR_RS10670	0.44	+0.2
116,499	-		BBR_RS10670	0.46	-0.7
116,514	+		BBR_RS10670	0.48	-0.2
116,514	+		BBR_RS10670	0.48	+0.7
116,514	+		BBR_RS10670	0.48	-0.3
116,519	+		BBR_RS10670	0.48	-0.9
116,522	-		BBR_RS10670	0.49	-0.3
116,531	+		BBR_RS10670	0.50	+0.4
116,557	+		BBR_RS10670	0.52	-1.3
116,559	+		BBR_RS10670	0.52	+0.0
116,560	-		BBR_RS10670	0.52	-0.8
116,575	-		BBR_RS10670	0.54	-0.3
116,581	+		BBR_RS10670	0.54	-0.4
116,586	+		BBR_RS10670	0.55	+0.9
116,594	-		BBR_RS10670	0.56	-0.0
116,601	+		BBR_RS10670	0.56	-0.2
116,616	+		BBR_RS10670	0.58	-0.1
116,646	+		BBR_RS10670	0.61	-0.0
116,656	+		BBR_RS10670	0.62	-0.2
116,664	-		BBR_RS10670	0.63	-0.0
116,664	-		BBR_RS10670	0.63	+0.1
116,664	-		BBR_RS10670	0.63	+0.3
116,686	-		BBR_RS10670	0.65	+0.7
116,721	-		BBR_RS10670	0.68	-0.4
116,727	-		BBR_RS10670	0.69	+1.2
116,729	+		BBR_RS10670	0.69	-0.6
116,758	+		BBR_RS10670	0.72	+0.5
116,758	+		BBR_RS10670	0.72	-0.2
116,758	+		BBR_RS10670	0.72	+0.4
116,770	+		BBR_RS10670	0.73	-0.3
116,770	+		BBR_RS10670	0.73	-0.1
116,778	-		BBR_RS10670	0.74	-0.0
116,778	-		BBR_RS10670	0.74	-0.2
116,782	+		BBR_RS10670	0.74	-0.1
116,789	+		BBR_RS10670	0.75	+0.2
116,814	+		BBR_RS10670	0.77	+0.4
116,814	+		BBR_RS10670	0.77	-0.8
116,814	+		BBR_RS10670	0.77	-0.7
116,814	+		BBR_RS10670	0.77	+1.0
116,814	+		BBR_RS10670	0.77	+0.0
116,814	+		BBR_RS10670	0.77	-0.1
116,814	+		BBR_RS10670	0.77	+0.2
116,819	+		BBR_RS10670	0.78	+0.0
116,819	+		BBR_RS10670	0.78	-0.3
116,822	-		BBR_RS10670	0.78	+0.1
116,822	-		BBR_RS10670	0.78	+0.8
116,822	-		BBR_RS10670	0.78	+1.0
116,822	-		BBR_RS10670	0.78	+0.4
116,822	-		BBR_RS10670	0.78	+0.3
116,822	-		BBR_RS10670	0.78	+0.3
116,842	+		BBR_RS10670	0.80	-0.7
116,854	-		BBR_RS10670	0.81	+0.6
116,854	-		BBR_RS10670	0.81	-0.7
116,854	-		BBR_RS10670	0.81	-0.2
116,873	-		BBR_RS10670	0.83	+0.2
116,879	-		BBR_RS10670	0.84	+0.8
116,888	+		BBR_RS10670	0.85	-0.3
116,888	+		BBR_RS10670	0.85	+0.5
116,888	+		BBR_RS10670	0.85	+0.5
116,891	+		BBR_RS10670	0.85	-1.8
116,893	+		BBR_RS10670	0.85	+0.1
116,906	-		BBR_RS10670	0.86	-0.1
116,906	-		BBR_RS10670	0.86	+0.0
116,922	+		BBR_RS10670	0.88	-0.4
116,943	-				+0.3
116,954	+				-0.1
116,961	-				-0.0
116,976	-				+0.4
116,988	-				+0.4
116,988	-				+0.4
116,988	-				+0.0
116,990	+				+0.2
117,012	-				-0.0
117,019	+				-0.3
117,019	+				-0.4
117,019	+				+0.4
117,019	+				+0.6
117,019	+				+1.5
117,019	+				-0.3
117,019	+				+0.5
117,019	+				+0.0
117,019	+				+0.0
117,019	+				-0.3
117,022	-				-0.3
117,027	-				-0.2
117,027	-				+0.7
117,027	-				-0.2
117,027	-				+0.1
117,027	-				+1.1
117,027	-				-0.5
117,027	-				-0.4
117,027	-				-0.9
117,027	-				+0.3
117,037	-				+1.5
117,046	-				+0.1
117,046	-				+0.0
117,051	-				+0.4
117,059	-				-0.8
117,063	+				+0.1
117,065	-				-1.0
117,066	-				+0.1
117,070	-				-1.0
117,084	+				+0.3
117,123	-				+0.0
117,130	+				+0.5
117,130	+				-0.3
117,132	+				+1.3
117,149	+				-0.2
117,191	+		BBR_RS10675	0.10	-0.1
117,192	+		BBR_RS10675	0.10	+0.2
117,218	-		BBR_RS10675	0.14	-0.7
117,218	-		BBR_RS10675	0.14	+0.3
117,220	+		BBR_RS10675	0.14	+0.4
117,220	+		BBR_RS10675	0.14	-1.0
117,220	+		BBR_RS10675	0.14	-0.0
117,220	+		BBR_RS10675	0.14	+1.0
117,287	+		BBR_RS10675	0.24	+0.0
117,287	+		BBR_RS10675	0.24	-0.6
117,287	+		BBR_RS10675	0.24	-0.5
117,301	-		BBR_RS10675	0.25	+0.5
117,301	-		BBR_RS10675	0.25	-0.5
117,305	+		BBR_RS10675	0.26	+0.1
117,332	+		BBR_RS10675	0.30	-0.5
117,343	+		BBR_RS10675	0.31	+0.7
117,343	+		BBR_RS10675	0.31	+0.6
117,365	+		BBR_RS10675	0.34	+0.1
117,365	+		BBR_RS10675	0.34	+1.8
117,373	-		BBR_RS10675	0.35	+0.2
117,378	+		BBR_RS10675	0.36	+1.2
117,378	+		BBR_RS10675	0.36	-1.3
117,378	+		BBR_RS10675	0.36	-0.5
117,380	+		BBR_RS10675	0.36	-0.3
117,386	-		BBR_RS10675	0.37	-1.1
117,391	+		BBR_RS10675	0.38	-0.6
117,391	+		BBR_RS10675	0.38	-0.8
117,403	+		BBR_RS10675	0.40	-0.0
117,404	-		BBR_RS10675	0.40	-0.7
117,440	+		BBR_RS10675	0.45	+1.1
117,448	+		BBR_RS10675	0.46	+0.0
117,451	+		BBR_RS10675	0.46	-0.3
117,451	+		BBR_RS10675	0.46	-1.5
117,471	+		BBR_RS10675	0.49	+0.5
117,500	+		BBR_RS10675	0.53	-0.8
117,500	+		BBR_RS10675	0.53	+0.5
117,525	+		BBR_RS10675	0.56	-0.3
117,526	+		BBR_RS10675	0.56	-1.2
117,547	+		BBR_RS10675	0.59	-0.2
117,571	+		BBR_RS10675	0.63	+0.1
117,571	+		BBR_RS10675	0.63	-0.1
117,577	+		BBR_RS10675	0.63	-0.2
117,596	+		BBR_RS10675	0.66	-0.5
117,616	-		BBR_RS10675	0.69	-0.0
117,659	-		BBR_RS10675	0.75	+0.1
117,705	+		BBR_RS10675	0.81	-0.2
117,705	+		BBR_RS10675	0.81	-0.1
117,718	+		BBR_RS10675	0.83	+0.4
117,718	-		BBR_RS10675	0.83	+1.3
117,720	+		BBR_RS10675	0.83	-0.5
117,720	+		BBR_RS10675	0.83	-0.4
117,720	+		BBR_RS10675	0.83	+0.7
117,722	-		BBR_RS10675	0.83	-0.2
117,726	-		BBR_RS10675	0.84	+0.2
117,728	+		BBR_RS10675	0.84	-0.5
117,728	-		BBR_RS10675	0.84	-0.3
117,728	-		BBR_RS10675	0.84	-0.2
117,728	-		BBR_RS10675	0.84	+0.2
117,728	-		BBR_RS10675	0.84	+0.4
117,728	-		BBR_RS10675	0.84	-0.6
117,728	-		BBR_RS10675	0.84	-0.2
117,736	-		BBR_RS10675	0.85	-0.1
117,736	-		BBR_RS10675	0.85	+1.0
117,736	-		BBR_RS10675	0.85	-0.4
117,738	-		BBR_RS10675	0.86	+0.3
117,756	+		BBR_RS10675	0.88	+1.5
117,756	+		BBR_RS10675	0.88	-0.6
117,756	+		BBR_RS10675	0.88	-0.3
117,758	+		BBR_RS10675	0.88	+0.8
117,759	-		BBR_RS10675	0.89	-0.6
117,763	+		BBR_RS10675	0.89	-0.5
117,763	+		BBR_RS10675	0.89	+0.2
117,771	-				+0.6
117,771	-				+0.7
117,771	-				-0.2
117,771	-				-0.6
117,777	-				+0.1
117,777	-				-0.5
117,777	-				-0.4
117,782	-				+0.7
117,794	+				+0.0
117,794	+				-0.4
117,794	+				+0.8
117,802	-				-1.6
117,802	-				-1.5
117,806	+				+0.4
117,806	+				-0.1
117,807	-				+0.7
117,812	-				-0.3
117,814	-				+0.2
117,821	+				+0.3
117,821	+				-0.1
117,821	+				-0.9
117,821	+				+0.3
117,821	+				+0.4
117,824	-				-1.0
117,829	-				-0.5
117,829	-				-0.2
117,834	+				+0.5
117,842	+				+0.2
117,849	-				+0.0
117,869	+				+0.0
117,877	-				-0.3
117,877	-				+0.4
117,880	+				+0.5
117,880	+				-1.5
117,880	+				-0.3
117,888	-				+0.1
117,888	-				+0.5
117,896	-				-0.2
117,896	-				+0.4
117,904	-				-1.0
117,923	+				+1.1
117,931	-				+0.7
117,959	+				-0.5
117,962	-				+0.8
117,963	+				+0.3
117,963	+				-0.2
117,963	+				-0.1
117,963	+				+0.2
117,963	+				-0.4
117,967	-				+0.4
117,968	+				-0.2
117,968	+				+0.1
117,971	-				+0.7
117,971	-				-0.0
118,004	-		BBR_RS10680	0.11	-0.4
118,004	-		BBR_RS10680	0.11	+0.0
118,012	-		BBR_RS10680	0.12	+1.3
118,046	-		BBR_RS10680	0.15	-0.0
118,048	-		BBR_RS10680	0.16	+0.8
118,086	+		BBR_RS10680	0.19	+0.7
118,110	-		BBR_RS10680	0.21	+0.3
118,110	-		BBR_RS10680	0.21	-1.0
118,116	+		BBR_RS10680	0.22	+0.3
118,116	+		BBR_RS10680	0.22	+0.6
118,131	+		BBR_RS10680	0.23	-0.3
118,139	+		BBR_RS10680	0.24	+0.7
118,143	-		BBR_RS10680	0.25	+0.1
118,145	-		BBR_RS10680	0.25	+0.5
118,147	-		BBR_RS10680	0.25	+0.4
118,149	+		BBR_RS10680	0.25	+0.2
118,166	-		BBR_RS10680	0.27	+0.4
118,169	+		BBR_RS10680	0.27	-0.4
118,176	+		BBR_RS10680	0.28	+0.1
118,184	-		BBR_RS10680	0.28	-1.3
118,184	-		BBR_RS10680	0.28	+1.0
118,204	-		BBR_RS10680	0.30	+1.2
118,219	-		BBR_RS10680	0.32	+0.3
118,233	-		BBR_RS10680	0.33	+0.7
118,234	+		BBR_RS10680	0.33	-0.3
118,242	-		BBR_RS10680	0.34	+1.2
118,242	-		BBR_RS10680	0.34	+0.2
118,242	-		BBR_RS10680	0.34	+0.4
118,243	-		BBR_RS10680	0.34	+0.6
118,243	-		BBR_RS10680	0.34	-0.1
118,256	+		BBR_RS10680	0.35	-1.5
118,261	-		BBR_RS10680	0.36	+0.7
118,264	-		BBR_RS10680	0.36	-1.4
118,294	+		BBR_RS10680	0.39	+0.4
118,294	+		BBR_RS10680	0.39	-1.4
118,296	-		BBR_RS10680	0.39	+0.7
118,296	-		BBR_RS10680	0.39	+0.4
118,296	-		BBR_RS10680	0.39	+0.5
118,297	-		BBR_RS10680	0.39	-0.3
118,299	+		BBR_RS10680	0.39	+0.3
118,304	+		BBR_RS10680	0.40	+0.3
118,311	+		BBR_RS10680	0.40	-0.4
118,312	-		BBR_RS10680	0.40	+1.1
118,362	+		BBR_RS10680	0.45	+0.2
118,367	+		BBR_RS10680	0.46	+1.1
118,367	+		BBR_RS10680	0.46	+0.1
118,367	+		BBR_RS10680	0.46	-1.0
118,367	+		BBR_RS10680	0.46	-0.8
118,367	+		BBR_RS10680	0.46	+0.9
118,385	-		BBR_RS10680	0.47	+0.4
118,395	-		BBR_RS10680	0.48	+0.1
118,401	+		BBR_RS10680	0.49	-0.4
118,432	-		BBR_RS10680	0.52	+0.2
118,446	-		BBR_RS10680	0.53	-0.3
118,457	+		BBR_RS10680	0.54	+0.7
118,460	+		BBR_RS10680	0.54	-0.3
118,460	+		BBR_RS10680	0.54	+0.5
118,462	+		BBR_RS10680	0.55	+0.2
118,462	+		BBR_RS10680	0.55	+1.6
118,467	+		BBR_RS10680	0.55	+0.4
118,470	-		BBR_RS10680	0.55	+0.1
118,470	-		BBR_RS10680	0.55	+0.1
118,472	+		BBR_RS10680	0.56	-0.3
118,484	-		BBR_RS10680	0.57	+0.1
118,551	-		BBR_RS10680	0.63	-0.7
118,563	+		BBR_RS10680	0.64	+0.0
118,568	+		BBR_RS10680	0.65	+0.9
118,576	-		BBR_RS10680	0.65	+0.1
118,584	-		BBR_RS10680	0.66	-0.0
118,598	+		BBR_RS10680	0.67	+0.3
118,625	-		BBR_RS10680	0.70	+0.2
118,631	+		BBR_RS10680	0.71	-0.0
118,653	+		BBR_RS10680	0.73	-0.9
118,669	-		BBR_RS10680	0.74	+0.2
118,669	-		BBR_RS10680	0.74	-0.1
118,693	+		BBR_RS10680	0.76	+0.2
118,726	+		BBR_RS10680	0.79	-0.1
118,734	-		BBR_RS10680	0.80	-0.5
118,734	-		BBR_RS10680	0.80	+0.2
118,734	-		BBR_RS10680	0.80	-1.8
118,734	-		BBR_RS10680	0.80	+0.1
118,754	-		BBR_RS10680	0.82	-0.4
118,754	-		BBR_RS10680	0.82	+0.8
118,766	+		BBR_RS10680	0.83	-0.6
118,783	-		BBR_RS10680	0.85	+0.6
118,804	-		BBR_RS10680	0.87	+0.6
118,835	-		BBR_RS10680	0.90	+0.4
118,835	-		BBR_RS10680	0.90	+0.7
118,839	+				-0.1