Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1929

Experiment: Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1928 and BT1929 are separated by 19 nucleotidesBT1929 and BT1930 are separated by 64 nucleotides BT1928: BT1928 - transposase (NCBI ptt file), at 2,419,971 to 2,421,200 BT1928 BT1929: BT1929 - transposase (NCBI ptt file), at 2,421,220 to 2,422,431 BT1929 BT1930: BT1930 - conserved hypothetical protein (NCBI ptt file), at 2,422,496 to 2,422,789 BT1930 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2420.380 kb on - strand, within BT1928at 2420.593 kb on - strand, within BT1928at 2420.771 kb on - strand, within BT1928at 2420.826 kb on + strand, within BT1928at 2420.899 kb on - strand, within BT1928at 2421.100 kb on + strandat 2421.115 kb on + strandat 2421.117 kb on + strandat 2421.242 kb on + strandat 2421.258 kb on + strandat 2421.787 kb on + strand, within BT1929at 2421.812 kb on + strand, within BT1929at 2421.813 kb on - strand, within BT1929at 2421.813 kb on - strand, within BT1929at 2421.874 kb on - strand, within BT1929at 2422.040 kb on - strand, within BT1929at 2422.120 kb on + strand, within BT1929at 2422.180 kb on + strand, within BT1929at 2422.180 kb on + strand, within BT1929at 2422.188 kb on - strand, within BT1929at 2422.339 kb on + strandat 2422.433 kb on + strandat 2422.454 kb on + strandat 2422.480 kb on - strandat 2422.490 kb on - strandat 2422.494 kb on + strandat 2422.494 kb on + strandat 2422.495 kb on - strandat 2422.582 kb on - strand, within BT1930at 2422.778 kb on - strandat 2422.896 kb on + strandat 2423.040 kb on + strandat 2423.126 kb on - strandat 2423.159 kb on - strandat 2423.403 kb on - strandat 2423.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.05 mg/ml
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2,420,380 - BT1928 0.33 -1.5
2,420,593 - BT1928 0.51 -1.1
2,420,771 - BT1928 0.65 -0.4
2,420,826 + BT1928 0.70 -1.3
2,420,899 - BT1928 0.75 +2.0
2,421,100 + -1.3
2,421,115 + -1.6
2,421,117 + +0.3
2,421,242 + -0.8
2,421,258 + -1.9
2,421,787 + BT1929 0.47 +1.4
2,421,812 + BT1929 0.49 -0.8
2,421,813 - BT1929 0.49 -0.2
2,421,813 - BT1929 0.49 +0.4
2,421,874 - BT1929 0.54 -0.3
2,422,040 - BT1929 0.68 -0.9
2,422,120 + BT1929 0.74 -0.2
2,422,180 + BT1929 0.79 +0.3
2,422,180 + BT1929 0.79 -1.3
2,422,188 - BT1929 0.80 +1.9
2,422,339 + -0.6
2,422,433 + +0.0
2,422,454 + -1.9
2,422,480 - +0.0
2,422,490 - -0.2
2,422,494 + -1.8
2,422,494 + -1.5
2,422,495 - -0.4
2,422,582 - BT1930 0.29 +0.9
2,422,778 - +3.2
2,422,896 + -1.6
2,423,040 + -1.6
2,423,126 - -2.7
2,423,159 - +0.4
2,423,403 - -0.2
2,423,423 - -0.7

Or see this region's nucleotide sequence