Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1369

Experiment: Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1368 and BT1369 are separated by 19 nucleotidesBT1369 and BT1370 overlap by 4 nucleotides BT1368: BT1368 - UDP-N-acetylenolpyruvoylglucosamine reductase (NCBI ptt file), at 1,696,842 to 1,697,837 BT1368 BT1369: BT1369 - hypothetical protein (NCBI ptt file), at 1,697,857 to 1,698,705 BT1369 BT1370: BT1370 - NAD dependent nucleotide-diphosphate-sugar epimerase (NCBI ptt file), at 1,698,702 to 1,699,658 BT1370 Position (kb) 1697 1698 1699Strain fitness (log2 ratio) -3 -2 -1 0 1at 1697.859 kb on - strandat 1697.881 kb on - strandat 1697.997 kb on - strand, within BT1369at 1698.250 kb on - strand, within BT1369at 1698.372 kb on - strand, within BT1369at 1698.392 kb on - strand, within BT1369at 1698.860 kb on - strand, within BT1370at 1699.016 kb on - strand, within BT1370at 1699.016 kb on - strand, within BT1370at 1699.030 kb on - strand, within BT1370at 1699.047 kb on - strand, within BT1370at 1699.232 kb on - strand, within BT1370at 1699.236 kb on - strand, within BT1370at 1699.236 kb on - strand, within BT1370at 1699.441 kb on - strand, within BT1370at 1699.570 kb on - strandat 1699.687 kb on - strandat 1699.703 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.05 mg/ml
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1,697,859 - -0.7
1,697,881 - +0.7
1,697,997 - BT1369 0.16 -3.2
1,698,250 - BT1369 0.46 -2.0
1,698,372 - BT1369 0.61 +0.1
1,698,392 - BT1369 0.63 +0.7
1,698,860 - BT1370 0.17 -0.9
1,699,016 - BT1370 0.33 -2.5
1,699,016 - BT1370 0.33 +1.7
1,699,030 - BT1370 0.34 -2.3
1,699,047 - BT1370 0.36 -0.3
1,699,232 - BT1370 0.55 -2.0
1,699,236 - BT1370 0.56 +0.2
1,699,236 - BT1370 0.56 -0.7
1,699,441 - BT1370 0.77 -0.7
1,699,570 - +0.1
1,699,687 - -0.3
1,699,703 - +1.7

Or see this region's nucleotide sequence