Experiment: Gjerstad humics 0.5 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_634 and Pf6N2E2_635 are separated by 179 nucleotides Pf6N2E2_635 and Pf6N2E2_636 are separated by 293 nucleotides Pf6N2E2_636 and Pf6N2E2_637 are separated by 125 nucleotides
Pf6N2E2_634 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form, at 722,686 to 727,554
_634
Pf6N2E2_635 - hypothetical protein, at 727,734 to 728,138
_635
Pf6N2E2_636 - FIG00954888: hypothetical protein, at 728,432 to 728,725
_636
Pf6N2E2_637 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 728,851 to 730,284
_637
Position (kb) 728
729 Strain fitness (log2 ratio) -1
0
1
2 at 727.486 kb on + strand at 727.486 kb on + strand at 727.856 kb on - strand, within Pf6N2E2_635 at 727.876 kb on + strand, within Pf6N2E2_635 at 727.877 kb on - strand, within Pf6N2E2_635 at 727.877 kb on - strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.930 kb on + strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.931 kb on - strand, within Pf6N2E2_635 at 727.984 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.046 kb on + strand, within Pf6N2E2_635 at 728.047 kb on - strand, within Pf6N2E2_635 at 728.083 kb on + strand, within Pf6N2E2_635 at 728.084 kb on - strand, within Pf6N2E2_635 at 728.196 kb on + strand at 728.196 kb on + strand at 728.197 kb on - strand at 728.244 kb on + strand at 728.424 kb on - strand at 728.449 kb on + strand at 728.450 kb on - strand at 728.450 kb on - strand at 728.450 kb on - strand at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.602 kb on + strand, within Pf6N2E2_636 at 728.603 kb on - strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.604 kb on + strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.605 kb on - strand, within Pf6N2E2_636 at 728.699 kb on + strand at 728.700 kb on - strand at 728.871 kb on + strand at 728.982 kb on - strand at 729.058 kb on - strand, within Pf6N2E2_637 at 729.344 kb on + strand, within Pf6N2E2_637 at 729.453 kb on - strand, within Pf6N2E2_637 at 729.531 kb on - strand, within Pf6N2E2_637
Per-strain Table
Position Strand Gene LocusTag Fraction Gjerstad humics 0.5 M remove 727,486 + -0.2 727,486 + +1.2 727,856 - Pf6N2E2_635 0.30 -0.3 727,876 + Pf6N2E2_635 0.35 -0.6 727,877 - Pf6N2E2_635 0.35 +0.3 727,877 - Pf6N2E2_635 0.35 -0.7 727,930 + Pf6N2E2_635 0.48 +0.5 727,930 + Pf6N2E2_635 0.48 -0.3 727,930 + Pf6N2E2_635 0.48 -0.4 727,930 + Pf6N2E2_635 0.48 +1.2 727,931 - Pf6N2E2_635 0.49 -1.0 727,931 - Pf6N2E2_635 0.49 +0.2 727,931 - Pf6N2E2_635 0.49 -0.4 727,931 - Pf6N2E2_635 0.49 -0.6 727,931 - Pf6N2E2_635 0.49 -0.5 727,984 + Pf6N2E2_635 0.62 +1.0 728,046 + Pf6N2E2_635 0.77 +0.9 728,046 + Pf6N2E2_635 0.77 -0.1 728,046 + Pf6N2E2_635 0.77 +1.4 728,047 - Pf6N2E2_635 0.77 -0.4 728,083 + Pf6N2E2_635 0.86 +0.0 728,084 - Pf6N2E2_635 0.86 -0.6 728,196 + +0.3 728,196 + -0.8 728,197 - +0.1 728,244 + +0.7 728,424 - +2.7 728,449 + +0.5 728,450 - -1.1 728,450 - -0.8 728,450 - +0.3 728,602 + Pf6N2E2_636 0.58 -0.9 728,602 + Pf6N2E2_636 0.58 +0.7 728,602 + Pf6N2E2_636 0.58 -0.7 728,602 + Pf6N2E2_636 0.58 -1.1 728,602 + Pf6N2E2_636 0.58 -0.6 728,603 - Pf6N2E2_636 0.58 -0.4 728,604 + Pf6N2E2_636 0.59 -0.1 728,604 + Pf6N2E2_636 0.59 -0.5 728,604 + Pf6N2E2_636 0.59 +1.6 728,604 + Pf6N2E2_636 0.59 +0.0 728,605 - Pf6N2E2_636 0.59 +1.6 728,605 - Pf6N2E2_636 0.59 -0.5 728,605 - Pf6N2E2_636 0.59 -0.1 728,605 - Pf6N2E2_636 0.59 -0.8 728,605 - Pf6N2E2_636 0.59 -0.6 728,605 - Pf6N2E2_636 0.59 -0.7 728,699 + -0.4 728,700 - +1.2 728,871 + -0.5 728,982 - -0.1 729,058 - Pf6N2E2_637 0.14 -0.3 729,344 + Pf6N2E2_637 0.34 +0.2 729,453 - Pf6N2E2_637 0.42 +0.4 729,531 - Pf6N2E2_637 0.47 +0.2
Or see this region's nucleotide sequence