Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4387

Experiment: Gjerstad humics 0.5 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gjerstad humics 0.5 M
5,115,676	+		Pf6N2E2_4386	0.45	+0.5
5,115,676	+		Pf6N2E2_4386	0.45	-0.2
5,115,676	+		Pf6N2E2_4386	0.45	-0.8
5,115,676	+		Pf6N2E2_4386	0.45	-0.3
5,115,676	+		Pf6N2E2_4386	0.45	+0.9
5,115,676	+		Pf6N2E2_4386	0.45	-0.1
5,115,676	+		Pf6N2E2_4386	0.45	-0.4
5,115,677	-		Pf6N2E2_4386	0.45	+0.4
5,115,679	+		Pf6N2E2_4386	0.45	+0.3
5,115,696	+		Pf6N2E2_4386	0.47	-0.2
5,115,696	+		Pf6N2E2_4386	0.47	+0.3
5,115,697	-		Pf6N2E2_4386	0.47	+2.3
5,115,697	-		Pf6N2E2_4386	0.47	-1.6
5,115,697	-		Pf6N2E2_4386	0.47	-1.0
5,115,731	+		Pf6N2E2_4386	0.49	+0.5
5,115,731	+		Pf6N2E2_4386	0.49	+0.9
5,115,731	+		Pf6N2E2_4386	0.49	+1.5
5,115,731	+		Pf6N2E2_4386	0.49	-0.7
5,115,732	-		Pf6N2E2_4386	0.49	+0.3
5,115,732	-		Pf6N2E2_4386	0.49	-0.5
5,115,732	-		Pf6N2E2_4386	0.49	-1.1
5,115,732	-		Pf6N2E2_4386	0.49	-0.1
5,116,010	+		Pf6N2E2_4386	0.68	-0.6
5,116,011	-		Pf6N2E2_4386	0.68	+0.0
5,116,026	+		Pf6N2E2_4386	0.70	-0.9
5,116,026	+		Pf6N2E2_4386	0.70	+0.1
5,116,027	-		Pf6N2E2_4386	0.70	-1.2
5,116,027	-		Pf6N2E2_4386	0.70	+0.4
5,116,038	+		Pf6N2E2_4386	0.70	+0.4
5,116,038	+		Pf6N2E2_4386	0.70	+0.5
5,116,039	-		Pf6N2E2_4386	0.70	+0.5
5,116,039	-		Pf6N2E2_4386	0.70	+0.8
5,116,041	+		Pf6N2E2_4386	0.71	+0.4
5,116,041	+		Pf6N2E2_4386	0.71	-0.3
5,116,041	+		Pf6N2E2_4386	0.71	+0.5
5,116,041	+		Pf6N2E2_4386	0.71	-0.4
5,116,041	+		Pf6N2E2_4386	0.71	+0.4
5,116,041	+		Pf6N2E2_4386	0.71	+0.6
5,116,042	-		Pf6N2E2_4386	0.71	-0.6
5,116,042	-		Pf6N2E2_4386	0.71	+0.5
5,116,201	+		Pf6N2E2_4386	0.82	-0.7
5,116,272	+		Pf6N2E2_4386	0.87	-0.2
5,116,272	+		Pf6N2E2_4386	0.87	-0.8
5,116,272	+		Pf6N2E2_4386	0.87	-0.3
5,116,323	+				+0.3
5,116,324	-				+0.7
5,116,340	-				-0.4
5,116,404	+				+1.3
5,116,405	-				-0.2
5,116,405	-				-0.3
5,116,452	+				-0.9
5,116,453	-				+0.1
5,116,499	+				+1.2
5,116,500	-				+0.0
5,116,557	-				+0.1
5,116,625	+				+0.3
5,116,674	+		Pf6N2E2_4387	0.13	-0.0
5,116,674	+		Pf6N2E2_4387	0.13	-1.2
5,116,674	+		Pf6N2E2_4387	0.13	-0.8
5,116,674	+		Pf6N2E2_4387	0.13	+0.2
5,116,674	+		Pf6N2E2_4387	0.13	-0.2
5,116,674	+		Pf6N2E2_4387	0.13	+1.1
5,116,674	+		Pf6N2E2_4387	0.13	-0.4
5,116,674	+		Pf6N2E2_4387	0.13	+0.4
5,116,675	-		Pf6N2E2_4387	0.13	-0.4
5,116,675	-		Pf6N2E2_4387	0.13	-0.5
5,116,675	-		Pf6N2E2_4387	0.13	-0.6
5,116,675	-		Pf6N2E2_4387	0.13	-0.9
5,116,675	-		Pf6N2E2_4387	0.13	-1.2
5,116,675	-		Pf6N2E2_4387	0.13	-0.6
5,116,783	+		Pf6N2E2_4387	0.57	-0.5
5,116,783	+		Pf6N2E2_4387	0.57	-0.0
5,116,784	-		Pf6N2E2_4387	0.57	-0.0
5,116,784	-		Pf6N2E2_4387	0.57	-1.2
5,116,784	-		Pf6N2E2_4387	0.57	-0.3
5,116,807	+		Pf6N2E2_4387	0.67	-1.0
5,116,807	+		Pf6N2E2_4387	0.67	+0.0
5,116,807	+		Pf6N2E2_4387	0.67	+0.1
5,116,808	-		Pf6N2E2_4387	0.67	-0.8
5,116,808	-		Pf6N2E2_4387	0.67	+0.1
5,116,808	-		Pf6N2E2_4387	0.67	+0.0
5,116,808	-		Pf6N2E2_4387	0.67	-1.3
5,116,894	+				-0.3
5,116,894	+				+0.5
5,116,894	+				+0.6
5,116,895	-				-0.6
5,116,895	-				+0.4
5,116,895	-				+0.2
5,116,895	-				+0.8
5,116,895	-				+0.1
5,116,895	-				+0.1
5,116,895	-				-1.2
5,116,961	+				-2.1
5,116,962	-				+0.7
5,117,007	+				+0.2
5,117,007	+				+0.0
5,117,008	-				+0.5
5,117,008	-				+0.5
5,117,153	+		Pf6N2E2_4388	0.11	-0.1
5,117,153	+		Pf6N2E2_4388	0.11	+0.5
5,117,154	-		Pf6N2E2_4388	0.11	-1.5
5,117,154	-		Pf6N2E2_4388	0.11	-0.3
5,117,197	-		Pf6N2E2_4388	0.15	+1.4
5,117,209	-		Pf6N2E2_4388	0.15	+0.3
5,117,209	-		Pf6N2E2_4388	0.15	-0.6
5,117,211	+		Pf6N2E2_4388	0.16	+1.1
5,117,211	+		Pf6N2E2_4388	0.16	-1.3
5,117,211	+		Pf6N2E2_4388	0.16	-0.0
5,117,212	-		Pf6N2E2_4388	0.16	+0.2
5,117,212	-		Pf6N2E2_4388	0.16	+0.1
5,117,212	-		Pf6N2E2_4388	0.16	-0.2
5,117,212	-		Pf6N2E2_4388	0.16	-0.4
5,117,212	-		Pf6N2E2_4388	0.16	+0.1
5,117,212	-		Pf6N2E2_4388	0.16	-0.6
5,117,212	-		Pf6N2E2_4388	0.16	-1.5
5,117,346	+		Pf6N2E2_4388	0.26	-0.4
5,117,347	-		Pf6N2E2_4388	0.26	+0.1
5,117,347	-		Pf6N2E2_4388	0.26	-2.2
5,117,347	-		Pf6N2E2_4388	0.26	+0.1
5,117,347	-		Pf6N2E2_4388	0.26	+1.5
5,117,347	-		Pf6N2E2_4388	0.26	+0.1
5,117,356	+		Pf6N2E2_4388	0.27	+0.4
5,117,357	-		Pf6N2E2_4388	0.27	+0.9
5,117,380	-		Pf6N2E2_4388	0.28	+0.9
5,117,380	-		Pf6N2E2_4388	0.28	-0.0
5,117,430	+		Pf6N2E2_4388	0.32	+0.1
5,117,431	-		Pf6N2E2_4388	0.32	-0.2
5,117,431	-		Pf6N2E2_4388	0.32	-0.6
5,117,431	-		Pf6N2E2_4388	0.32	+0.8
5,117,431	-		Pf6N2E2_4388	0.32	+0.3
5,117,523	+		Pf6N2E2_4388	0.39	-0.5
5,117,523	+		Pf6N2E2_4388	0.39	-1.5
5,117,523	+		Pf6N2E2_4388	0.39	+0.8
5,117,523	+		Pf6N2E2_4388	0.39	+0.6
5,117,523	+		Pf6N2E2_4388	0.39	+0.1
5,117,523	+		Pf6N2E2_4388	0.39	-1.7
5,117,523	+		Pf6N2E2_4388	0.39	-0.2
5,117,523	+		Pf6N2E2_4388	0.39	+0.2
5,117,524	-		Pf6N2E2_4388	0.39	-0.3
5,117,524	-		Pf6N2E2_4388	0.39	-0.7
5,117,524	-		Pf6N2E2_4388	0.39	-0.0
5,117,524	-		Pf6N2E2_4388	0.39	+0.2
5,117,524	-		Pf6N2E2_4388	0.39	+0.2
5,117,524	-		Pf6N2E2_4388	0.39	+0.2
5,117,524	-		Pf6N2E2_4388	0.39	+1.7
5,117,577	+		Pf6N2E2_4388	0.43	-0.3
5,117,577	+		Pf6N2E2_4388	0.43	-0.6
5,117,577	+		Pf6N2E2_4388	0.43	+0.5
5,117,578	-		Pf6N2E2_4388	0.44	-0.1
5,117,652	+		Pf6N2E2_4388	0.49	+0.3
5,117,653	-		Pf6N2E2_4388	0.49	-0.0
5,117,781	+		Pf6N2E2_4388	0.59	+1.2