Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24635

Experiment: Growth at 34C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS24625 and PFLU_RS24630 are separated by 146 nucleotidesPFLU_RS24630 and PFLU_RS24635 are separated by 37 nucleotidesPFLU_RS24635 and PFLU_RS24640 are separated by 262 nucleotides PFLU_RS24625: PFLU_RS24625 - CoA pyrophosphatase, at 5,514,598 to 5,515,200 _RS24625 PFLU_RS24630: PFLU_RS24630 - NUDIX hydrolase, at 5,515,347 to 5,515,895 _RS24630 PFLU_RS24635: PFLU_RS24635 - L,D-transpeptidase family protein, at 5,515,933 to 5,516,436 _RS24635 PFLU_RS24640: PFLU_RS24640 - GntR family transcriptional regulator, at 5,516,699 to 5,517,457 _RS24640 Position (kb) 5515 5516 5517Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5515.105 kb on - strand, within PFLU_RS24625at 5515.117 kb on + strand, within PFLU_RS24625at 5515.117 kb on + strand, within PFLU_RS24625at 5515.117 kb on + strand, within PFLU_RS24625at 5515.117 kb on + strand, within PFLU_RS24625at 5515.117 kb on + strand, within PFLU_RS24625at 5515.117 kb on + strand, within PFLU_RS24625at 5515.117 kb on + strand, within PFLU_RS24625at 5515.117 kb on + strand, within PFLU_RS24625at 5515.117 kb on + strand, within PFLU_RS24625at 5515.118 kb on - strand, within PFLU_RS24625at 5515.118 kb on - strand, within PFLU_RS24625at 5515.118 kb on - strand, within PFLU_RS24625at 5515.118 kb on - strand, within PFLU_RS24625at 5515.155 kb on + strandat 5515.156 kb on - strandat 5515.156 kb on - strandat 5515.156 kb on - strandat 5515.186 kb on + strandat 5515.186 kb on + strandat 5515.186 kb on + strandat 5515.186 kb on + strandat 5515.186 kb on + strandat 5515.187 kb on - strandat 5515.187 kb on - strandat 5515.187 kb on - strandat 5515.222 kb on + strandat 5515.321 kb on + strandat 5515.321 kb on + strandat 5515.321 kb on + strandat 5515.322 kb on - strandat 5515.322 kb on - strandat 5515.447 kb on - strand, within PFLU_RS24630at 5515.493 kb on + strand, within PFLU_RS24630at 5515.559 kb on + strand, within PFLU_RS24630at 5515.560 kb on - strand, within PFLU_RS24630at 5515.560 kb on - strand, within PFLU_RS24630at 5515.644 kb on + strand, within PFLU_RS24630at 5515.645 kb on - strand, within PFLU_RS24630at 5515.645 kb on - strand, within PFLU_RS24630at 5515.645 kb on - strand, within PFLU_RS24630at 5515.645 kb on - strand, within PFLU_RS24630at 5515.682 kb on + strand, within PFLU_RS24630at 5515.682 kb on + strand, within PFLU_RS24630at 5515.682 kb on + strand, within PFLU_RS24630at 5515.682 kb on + strand, within PFLU_RS24630at 5515.682 kb on + strand, within PFLU_RS24630at 5515.682 kb on + strand, within PFLU_RS24630at 5515.683 kb on - strand, within PFLU_RS24630at 5515.683 kb on - strand, within PFLU_RS24630at 5515.683 kb on - strand, within PFLU_RS24630at 5515.683 kb on - strand, within PFLU_RS24630at 5515.683 kb on - strand, within PFLU_RS24630at 5515.683 kb on - strand, within PFLU_RS24630at 5515.683 kb on - strand, within PFLU_RS24630at 5515.683 kb on - strand, within PFLU_RS24630at 5515.683 kb on - strand, within PFLU_RS24630at 5515.689 kb on + strand, within PFLU_RS24630at 5515.690 kb on - strand, within PFLU_RS24630at 5515.690 kb on - strand, within PFLU_RS24630at 5515.690 kb on - strand, within PFLU_RS24630at 5515.690 kb on - strand, within PFLU_RS24630at 5515.806 kb on - strand, within PFLU_RS24630at 5515.810 kb on + strand, within PFLU_RS24630at 5515.810 kb on + strand, within PFLU_RS24630at 5515.810 kb on + strand, within PFLU_RS24630at 5515.810 kb on + strand, within PFLU_RS24630at 5515.810 kb on + strand, within PFLU_RS24630at 5515.810 kb on + strand, within PFLU_RS24630at 5515.810 kb on + strand, within PFLU_RS24630at 5515.810 kb on + strand, within PFLU_RS24630at 5515.810 kb on + strand, within PFLU_RS24630at 5515.810 kb on + strand, within PFLU_RS24630at 5515.810 kb on + strand, within PFLU_RS24630at 5515.811 kb on - strand, within PFLU_RS24630at 5515.811 kb on - strand, within PFLU_RS24630at 5515.811 kb on - strand, within PFLU_RS24630at 5515.811 kb on - strand, within PFLU_RS24630at 5515.811 kb on - strand, within PFLU_RS24630at 5515.811 kb on - strand, within PFLU_RS24630at 5515.811 kb on - strand, within PFLU_RS24630at 5515.815 kb on + strand, within PFLU_RS24630at 5515.815 kb on + strand, within PFLU_RS24630at 5515.815 kb on + strand, within PFLU_RS24630at 5515.816 kb on - strand, within PFLU_RS24630at 5515.893 kb on + strandat 5515.894 kb on - strandat 5515.953 kb on + strandat 5515.953 kb on + strandat 5515.953 kb on + strandat 5515.954 kb on - strandat 5515.954 kb on - strandat 5515.954 kb on - strandat 5515.954 kb on - strandat 5516.010 kb on + strand, within PFLU_RS24635at 5516.010 kb on + strand, within PFLU_RS24635at 5516.082 kb on + strand, within PFLU_RS24635at 5516.082 kb on + strand, within PFLU_RS24635at 5516.082 kb on + strand, within PFLU_RS24635at 5516.082 kb on + strand, within PFLU_RS24635at 5516.083 kb on - strand, within PFLU_RS24635at 5516.083 kb on - strand, within PFLU_RS24635at 5516.089 kb on + strand, within PFLU_RS24635at 5516.089 kb on + strand, within PFLU_RS24635at 5516.089 kb on + strand, within PFLU_RS24635at 5516.089 kb on + strand, within PFLU_RS24635at 5516.089 kb on + strand, within PFLU_RS24635at 5516.090 kb on - strand, within PFLU_RS24635at 5516.094 kb on + strand, within PFLU_RS24635at 5516.094 kb on + strand, within PFLU_RS24635at 5516.094 kb on + strand, within PFLU_RS24635at 5516.094 kb on + strand, within PFLU_RS24635at 5516.095 kb on - strand, within PFLU_RS24635at 5516.095 kb on - strand, within PFLU_RS24635at 5516.095 kb on - strand, within PFLU_RS24635at 5516.095 kb on - strand, within PFLU_RS24635at 5516.164 kb on + strand, within PFLU_RS24635at 5516.164 kb on + strand, within PFLU_RS24635at 5516.164 kb on + strand, within PFLU_RS24635at 5516.165 kb on - strand, within PFLU_RS24635at 5516.229 kb on + strand, within PFLU_RS24635at 5516.230 kb on - strand, within PFLU_RS24635at 5516.379 kb on + strand, within PFLU_RS24635at 5516.380 kb on - strand, within PFLU_RS24635at 5516.435 kb on - strandat 5516.435 kb on - strandat 5516.442 kb on + strandat 5516.457 kb on - strandat 5516.467 kb on + strandat 5516.500 kb on + strandat 5516.501 kb on - strandat 5516.551 kb on + strandat 5516.564 kb on + strandat 5516.578 kb on - strandat 5516.631 kb on + strandat 5516.632 kb on - strandat 5516.642 kb on - strandat 5516.677 kb on - strandat 5516.750 kb on + strandat 5516.751 kb on - strandat 5516.751 kb on - strandat 5516.751 kb on - strandat 5516.751 kb on - strandat 5516.751 kb on - strandat 5516.851 kb on + strand, within PFLU_RS24640at 5516.851 kb on + strand, within PFLU_RS24640at 5516.851 kb on + strand, within PFLU_RS24640at 5516.852 kb on - strand, within PFLU_RS24640at 5516.852 kb on - strand, within PFLU_RS24640at 5516.872 kb on + strand, within PFLU_RS24640at 5516.935 kb on + strand, within PFLU_RS24640at 5516.936 kb on - strand, within PFLU_RS24640at 5517.206 kb on + strand, within PFLU_RS24640at 5517.207 kb on - strand, within PFLU_RS24640at 5517.207 kb on - strand, within PFLU_RS24640at 5517.213 kb on - strand, within PFLU_RS24640at 5517.230 kb on - strand, within PFLU_RS24640at 5517.268 kb on + strand, within PFLU_RS24640at 5517.268 kb on + strand, within PFLU_RS24640at 5517.269 kb on - strand, within PFLU_RS24640at 5517.297 kb on + strand, within PFLU_RS24640at 5517.297 kb on + strand, within PFLU_RS24640at 5517.297 kb on + strand, within PFLU_RS24640at 5517.297 kb on + strand, within PFLU_RS24640at 5517.297 kb on + strand, within PFLU_RS24640at 5517.297 kb on + strand, within PFLU_RS24640at 5517.297 kb on + strand, within PFLU_RS24640at 5517.298 kb on - strand, within PFLU_RS24640at 5517.298 kb on - strand, within PFLU_RS24640at 5517.298 kb on - strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.301 kb on + strand, within PFLU_RS24640at 5517.302 kb on - strand, within PFLU_RS24640at 5517.302 kb on - strand, within PFLU_RS24640at 5517.302 kb on - strand, within PFLU_RS24640at 5517.302 kb on - strand, within PFLU_RS24640at 5517.302 kb on - strand, within PFLU_RS24640at 5517.302 kb on - strand, within PFLU_RS24640at 5517.302 kb on - strand, within PFLU_RS24640at 5517.302 kb on - strand, within PFLU_RS24640at 5517.302 kb on - strand, within PFLU_RS24640at 5517.302 kb on - strand, within PFLU_RS24640at 5517.345 kb on - strand, within PFLU_RS24640at 5517.383 kb on + strandat 5517.383 kb on + strandat 5517.383 kb on + strandat 5517.383 kb on + strandat 5517.383 kb on + strandat 5517.384 kb on - strandat 5517.384 kb on - strandat 5517.384 kb on - strandat 5517.384 kb on - strandat 5517.384 kb on - strandat 5517.384 kb on - strandat 5517.384 kb on - strandat 5517.384 kb on - strandat 5517.384 kb on - strandat 5517.398 kb on + strandat 5517.398 kb on + strandat 5517.398 kb on + strandat 5517.399 kb on - strandat 5517.399 kb on - strandat 5517.399 kb on - strandat 5517.399 kb on - strandat 5517.401 kb on + strandat 5517.401 kb on + strandat 5517.401 kb on + strandat 5517.402 kb on - strandat 5517.402 kb on - strandat 5517.402 kb on - strandat 5517.402 kb on - strandat 5517.402 kb on - strandat 5517.402 kb on - strandat 5517.434 kb on + strandat 5517.434 kb on + strandat 5517.434 kb on + strandat 5517.434 kb on + strandat 5517.434 kb on + strandat 5517.435 kb on - strandat 5517.435 kb on - strandat 5517.435 kb on - strandat 5517.435 kb on - strandat 5517.435 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 34C
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5,515,105 - PFLU_RS24625 0.84 +1.3
5,515,117 + PFLU_RS24625 0.86 -0.3
5,515,117 + PFLU_RS24625 0.86 +0.1
5,515,117 + PFLU_RS24625 0.86 -2.3
5,515,117 + PFLU_RS24625 0.86 -1.6
5,515,117 + PFLU_RS24625 0.86 +0.1
5,515,117 + PFLU_RS24625 0.86 +0.3
5,515,117 + PFLU_RS24625 0.86 +1.7
5,515,117 + PFLU_RS24625 0.86 -1.0
5,515,117 + PFLU_RS24625 0.86 -0.7
5,515,118 - PFLU_RS24625 0.86 +1.6
5,515,118 - PFLU_RS24625 0.86 -0.3
5,515,118 - PFLU_RS24625 0.86 +0.7
5,515,118 - PFLU_RS24625 0.86 +0.3
5,515,155 + +1.0
5,515,156 - +0.9
5,515,156 - +0.2
5,515,156 - +0.3
5,515,186 + +0.1
5,515,186 + +2.0
5,515,186 + +0.0
5,515,186 + +0.9
5,515,186 + +1.7
5,515,187 - -1.6
5,515,187 - -1.6
5,515,187 - +0.7
5,515,222 + +0.7
5,515,321 + +1.5
5,515,321 + -1.5
5,515,321 + +0.3
5,515,322 - +0.5
5,515,322 - -1.9
5,515,447 - PFLU_RS24630 0.18 +1.9
5,515,493 + PFLU_RS24630 0.27 -1.6
5,515,559 + PFLU_RS24630 0.39 -0.8
5,515,560 - PFLU_RS24630 0.39 -0.6
5,515,560 - PFLU_RS24630 0.39 +1.1
5,515,644 + PFLU_RS24630 0.54 +1.3
5,515,645 - PFLU_RS24630 0.54 +0.9
5,515,645 - PFLU_RS24630 0.54 -0.9
5,515,645 - PFLU_RS24630 0.54 -0.3
5,515,645 - PFLU_RS24630 0.54 -0.0
5,515,682 + PFLU_RS24630 0.61 -0.6
5,515,682 + PFLU_RS24630 0.61 -0.3
5,515,682 + PFLU_RS24630 0.61 +0.8
5,515,682 + PFLU_RS24630 0.61 +0.9
5,515,682 + PFLU_RS24630 0.61 -0.7
5,515,682 + PFLU_RS24630 0.61 +1.3
5,515,683 - PFLU_RS24630 0.61 -1.6
5,515,683 - PFLU_RS24630 0.61 -0.9
5,515,683 - PFLU_RS24630 0.61 +1.7
5,515,683 - PFLU_RS24630 0.61 -0.1
5,515,683 - PFLU_RS24630 0.61 +0.8
5,515,683 - PFLU_RS24630 0.61 +0.5
5,515,683 - PFLU_RS24630 0.61 -0.5
5,515,683 - PFLU_RS24630 0.61 -0.7
5,515,683 - PFLU_RS24630 0.61 +0.5
5,515,689 + PFLU_RS24630 0.62 -1.5
5,515,690 - PFLU_RS24630 0.62 +0.7
5,515,690 - PFLU_RS24630 0.62 -2.3
5,515,690 - PFLU_RS24630 0.62 +1.5
5,515,690 - PFLU_RS24630 0.62 -0.9
5,515,806 - PFLU_RS24630 0.84 +1.0
5,515,810 + PFLU_RS24630 0.84 +0.5
5,515,810 + PFLU_RS24630 0.84 -0.3
5,515,810 + PFLU_RS24630 0.84 -0.2
5,515,810 + PFLU_RS24630 0.84 -0.4
5,515,810 + PFLU_RS24630 0.84 -1.0
5,515,810 + PFLU_RS24630 0.84 +0.5
5,515,810 + PFLU_RS24630 0.84 -0.3
5,515,810 + PFLU_RS24630 0.84 -0.3
5,515,810 + PFLU_RS24630 0.84 +0.1
5,515,810 + PFLU_RS24630 0.84 +2.1
5,515,810 + PFLU_RS24630 0.84 -2.1
5,515,811 - PFLU_RS24630 0.85 -1.4
5,515,811 - PFLU_RS24630 0.85 +0.4
5,515,811 - PFLU_RS24630 0.85 +1.7
5,515,811 - PFLU_RS24630 0.85 -1.2
5,515,811 - PFLU_RS24630 0.85 -0.6
5,515,811 - PFLU_RS24630 0.85 +1.4
5,515,811 - PFLU_RS24630 0.85 +1.1
5,515,815 + PFLU_RS24630 0.85 -1.5
5,515,815 + PFLU_RS24630 0.85 +1.2
5,515,815 + PFLU_RS24630 0.85 +0.3
5,515,816 - PFLU_RS24630 0.85 +1.6
5,515,893 + +0.8
5,515,894 - +1.0
5,515,953 + +0.4
5,515,953 + +1.3
5,515,953 + -1.0
5,515,954 - -1.1
5,515,954 - +1.6
5,515,954 - +1.0
5,515,954 - -1.2
5,516,010 + PFLU_RS24635 0.15 +1.0
5,516,010 + PFLU_RS24635 0.15 -0.6
5,516,082 + PFLU_RS24635 0.30 -0.3
5,516,082 + PFLU_RS24635 0.30 -0.0
5,516,082 + PFLU_RS24635 0.30 +0.7
5,516,082 + PFLU_RS24635 0.30 +0.6
5,516,083 - PFLU_RS24635 0.30 -1.1
5,516,083 - PFLU_RS24635 0.30 -0.9
5,516,089 + PFLU_RS24635 0.31 -2.1
5,516,089 + PFLU_RS24635 0.31 -0.5
5,516,089 + PFLU_RS24635 0.31 -1.3
5,516,089 + PFLU_RS24635 0.31 +0.5
5,516,089 + PFLU_RS24635 0.31 +0.1
5,516,090 - PFLU_RS24635 0.31 -0.0
5,516,094 + PFLU_RS24635 0.32 -0.2
5,516,094 + PFLU_RS24635 0.32 -3.1
5,516,094 + PFLU_RS24635 0.32 -0.3
5,516,094 + PFLU_RS24635 0.32 -0.2
5,516,095 - PFLU_RS24635 0.32 -0.5
5,516,095 - PFLU_RS24635 0.32 -0.8
5,516,095 - PFLU_RS24635 0.32 -1.2
5,516,095 - PFLU_RS24635 0.32 +0.1
5,516,164 + PFLU_RS24635 0.46 +1.4
5,516,164 + PFLU_RS24635 0.46 -0.6
5,516,164 + PFLU_RS24635 0.46 +2.2
5,516,165 - PFLU_RS24635 0.46 +0.1
5,516,229 + PFLU_RS24635 0.59 -0.2
5,516,230 - PFLU_RS24635 0.59 -1.1
5,516,379 + PFLU_RS24635 0.88 -1.7
5,516,380 - PFLU_RS24635 0.89 -0.3
5,516,435 - -1.6
5,516,435 - +0.7
5,516,442 + +0.7
5,516,457 - +0.0
5,516,467 + -1.7
5,516,500 + -0.6
5,516,501 - +1.3
5,516,551 + -3.1
5,516,564 + +0.7
5,516,578 - -1.5
5,516,631 + +0.6
5,516,632 - +0.6
5,516,642 - +0.1
5,516,677 - -1.2
5,516,750 + +0.1
5,516,751 - -0.1
5,516,751 - -1.7
5,516,751 - +0.6
5,516,751 - +0.8
5,516,751 - +0.4
5,516,851 + PFLU_RS24640 0.20 -0.5
5,516,851 + PFLU_RS24640 0.20 +1.7
5,516,851 + PFLU_RS24640 0.20 -1.5
5,516,852 - PFLU_RS24640 0.20 +3.0
5,516,852 - PFLU_RS24640 0.20 +0.6
5,516,872 + PFLU_RS24640 0.23 -1.3
5,516,935 + PFLU_RS24640 0.31 +0.5
5,516,936 - PFLU_RS24640 0.31 +1.0
5,517,206 + PFLU_RS24640 0.67 +1.0
5,517,207 - PFLU_RS24640 0.67 -0.0
5,517,207 - PFLU_RS24640 0.67 +0.4
5,517,213 - PFLU_RS24640 0.68 -0.7
5,517,230 - PFLU_RS24640 0.70 -1.0
5,517,268 + PFLU_RS24640 0.75 -1.0
5,517,268 + PFLU_RS24640 0.75 +0.7
5,517,269 - PFLU_RS24640 0.75 +0.5
5,517,297 + PFLU_RS24640 0.79 -1.6
5,517,297 + PFLU_RS24640 0.79 -0.3
5,517,297 + PFLU_RS24640 0.79 +0.3
5,517,297 + PFLU_RS24640 0.79 -0.6
5,517,297 + PFLU_RS24640 0.79 -0.2
5,517,297 + PFLU_RS24640 0.79 -0.7
5,517,297 + PFLU_RS24640 0.79 -0.6
5,517,298 - PFLU_RS24640 0.79 -0.7
5,517,298 - PFLU_RS24640 0.79 +0.1
5,517,298 - PFLU_RS24640 0.79 +0.0
5,517,301 + PFLU_RS24640 0.79 -0.5
5,517,301 + PFLU_RS24640 0.79 +1.5
5,517,301 + PFLU_RS24640 0.79 -2.6
5,517,301 + PFLU_RS24640 0.79 +0.7
5,517,301 + PFLU_RS24640 0.79 -2.3
5,517,301 + PFLU_RS24640 0.79 +0.4
5,517,301 + PFLU_RS24640 0.79 -2.3
5,517,301 + PFLU_RS24640 0.79 -2.0
5,517,301 + PFLU_RS24640 0.79 -2.5
5,517,301 + PFLU_RS24640 0.79 -0.3
5,517,301 + PFLU_RS24640 0.79 -1.7
5,517,301 + PFLU_RS24640 0.79 +1.0
5,517,301 + PFLU_RS24640 0.79 +1.4
5,517,301 + PFLU_RS24640 0.79 +1.3
5,517,302 - PFLU_RS24640 0.79 +1.8
5,517,302 - PFLU_RS24640 0.79 +1.2
5,517,302 - PFLU_RS24640 0.79 +1.6
5,517,302 - PFLU_RS24640 0.79 -0.5
5,517,302 - PFLU_RS24640 0.79 +0.2
5,517,302 - PFLU_RS24640 0.79 -1.5
5,517,302 - PFLU_RS24640 0.79 +1.2
5,517,302 - PFLU_RS24640 0.79 +0.3
5,517,302 - PFLU_RS24640 0.79 +0.4
5,517,302 - PFLU_RS24640 0.79 -0.1
5,517,345 - PFLU_RS24640 0.85 -2.4
5,517,383 + +0.7
5,517,383 + -0.8
5,517,383 + +0.1
5,517,383 + +0.8
5,517,383 + +1.7
5,517,384 - +0.7
5,517,384 - -0.6
5,517,384 - +1.1
5,517,384 - +0.6
5,517,384 - +1.3
5,517,384 - +0.1
5,517,384 - +1.2
5,517,384 - -0.2
5,517,384 - +0.6
5,517,398 + -0.7
5,517,398 + -1.1
5,517,398 + +0.0
5,517,399 - +0.1
5,517,399 - -1.1
5,517,399 - +0.4
5,517,399 - -2.1
5,517,401 + -0.3
5,517,401 + +0.6
5,517,401 + -0.3
5,517,402 - +0.1
5,517,402 - +0.6
5,517,402 - +0.5
5,517,402 - -0.8
5,517,402 - +1.9
5,517,402 - -0.0
5,517,434 + +0.7
5,517,434 + -2.2
5,517,434 + -0.6
5,517,434 + +1.3
5,517,434 + -0.1
5,517,435 - +0.4
5,517,435 - -1.7
5,517,435 - -1.1
5,517,435 - -0.9
5,517,435 - -0.3

Or see this region's nucleotide sequence