Strain Fitness in Pantoea sp. MT58 around IAI47_17760

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,772,072	-		IAI47_17755	0.53	-1.7
3,772,072	-		IAI47_17755	0.53	+0.1
3,772,072	-		IAI47_17755	0.53	+1.0
3,772,078	-		IAI47_17755	0.53	-0.3
3,772,285	+		IAI47_17755	0.69	+2.1
3,772,285	+		IAI47_17755	0.69	-0.3
3,772,286	-		IAI47_17755	0.69	-1.0
3,772,286	-		IAI47_17755	0.69	+0.0
3,772,286	-		IAI47_17755	0.69	-0.7
3,772,286	-		IAI47_17755	0.69	+0.8
3,772,286	-		IAI47_17755	0.69	+0.1
3,772,302	+		IAI47_17755	0.70	-0.8
3,772,302	+		IAI47_17755	0.70	-0.6
3,772,303	-		IAI47_17755	0.70	-2.4
3,772,303	-		IAI47_17755	0.70	+0.6
3,772,344	+		IAI47_17755	0.73	+0.4
3,772,345	-		IAI47_17755	0.73	-0.8
3,772,425	+		IAI47_17755	0.79	-0.5
3,772,426	-		IAI47_17755	0.79	+0.4
3,772,478	-		IAI47_17755	0.83	+0.6
3,772,586	+				+0.8
3,772,586	+				+0.4
3,772,586	+				+1.5
3,772,707	+				+0.5
3,772,707	+				+0.6
3,772,707	+				+1.2
3,772,707	+				+0.5
3,772,707	+				+1.1
3,772,707	+				-0.5
3,772,707	+				-0.8
3,772,707	+				+0.1
3,772,708	-				-0.4
3,772,708	-				+3.0
3,772,708	-				-0.9
3,772,708	-				+0.1
3,772,708	-				-0.0
3,772,708	-				-0.7
3,772,708	-				+2.3
3,772,708	-				+0.6
3,772,708	-				+1.0
3,772,708	-				-1.1
3,772,708	-				+0.5
3,772,767	+				+0.8
3,772,768	-				+0.1
3,772,775	+				+0.2
3,772,798	-				-1.5
3,772,798	-				+0.4
3,772,818	-				+0.1
3,772,818	-				+0.4
3,772,818	-				+0.7
3,772,831	+				-1.8
3,772,831	+				+1.5
3,772,831	+				-1.0
3,772,831	+				+1.0
3,772,832	-				-1.1
3,772,832	-				-0.5
3,772,836	-				-1.7
3,772,856	+				+1.0
3,772,883	+				-2.1
3,772,924	+				+0.0
3,772,925	-				-0.2
3,772,937	+				+0.2
3,772,937	+				-0.3
3,772,937	+				-0.2
3,772,937	+				+0.3
3,772,937	+				-1.2
3,772,937	+				-3.0
3,772,937	+				-0.4
3,772,937	+				+0.5
3,772,938	-				+2.2
3,772,938	-				+0.3
3,772,938	-				+0.5
3,772,938	-				-1.7
3,772,938	-				+1.6
3,772,948	+				+0.2
3,772,948	+				+1.0
3,772,948	+				-0.1
3,772,948	+				+0.1
3,772,949	-				+1.9
3,772,949	-				+0.6
3,772,959	+				+1.2
3,772,960	-				-0.9
3,772,960	-				-1.8
3,772,960	-				+0.8
3,772,993	+				-0.2
3,772,993	+				-1.9
3,772,994	-				+0.4
3,773,067	+				-1.6
3,773,067	+				+0.4
3,773,067	+				+0.8
3,773,067	+				+1.1
3,773,067	+				-0.2
3,773,067	+				+2.0
3,773,067	+				-0.6
3,773,068	-				-2.2
3,773,068	-				-0.4
3,773,068	-				+0.2
3,773,068	-				-0.6
3,773,068	-				+0.4
3,773,257	+		IAI47_17760	0.29	-1.8
3,773,258	-		IAI47_17760	0.29	-1.3
3,773,303	-		IAI47_17760	0.36	-2.4
3,773,396	+		IAI47_17760	0.50	-0.9
3,773,396	+		IAI47_17760	0.50	+0.6
3,773,397	-		IAI47_17760	0.50	-0.0
3,773,397	-		IAI47_17760	0.50	-0.2
3,773,397	-		IAI47_17760	0.50	-2.0
3,773,436	+		IAI47_17760	0.56	-0.4
3,773,437	-		IAI47_17760	0.56	-0.5
3,773,437	-		IAI47_17760	0.56	-1.1
3,773,449	-		IAI47_17760	0.58	-3.2
3,773,460	-		IAI47_17760	0.59	-0.7
3,773,460	-		IAI47_17760	0.59	-1.2
3,773,520	+		IAI47_17760	0.68	-0.3
3,773,520	+		IAI47_17760	0.68	+1.8
3,773,640	+		IAI47_17760	0.86	+1.7
3,773,640	+		IAI47_17760	0.86	-0.5
3,773,640	+		IAI47_17760	0.86	-0.6
3,773,641	-		IAI47_17760	0.86	-0.7
3,773,641	-		IAI47_17760	0.86	-1.7
3,773,647	+		IAI47_17760	0.87	+0.5
3,773,763	+				+0.1
3,773,763	+				+0.4
3,773,763	+				+2.0
3,773,763	+				-1.1
3,773,763	+				-0.5
3,773,763	+				-0.4
3,773,763	+				+0.6
3,773,763	+				+2.7
3,773,763	+				+0.4
3,773,763	+				+0.6
3,773,763	+				+0.4
3,773,763	+				-1.0
3,773,763	+				+1.3
3,773,763	+				+1.2
3,773,763	+				-0.2
3,773,764	-				+0.0
3,773,764	-				-0.6
3,773,764	-				+1.0
3,773,764	-				+1.4
3,773,764	-				-0.0
3,773,764	-				+0.5
3,773,764	-				-1.4
3,773,764	-				+2.4
3,773,764	-				+0.9
3,773,764	-				+0.9
3,773,765	+				+1.1
3,773,765	+				+1.2
3,773,765	+				+1.0
3,773,765	+				-2.7
3,773,766	-				+1.0
3,773,766	-				-1.5
3,773,766	-				+0.4
3,773,779	+				+1.4
3,773,780	-				-0.8
3,773,785	+				+0.7
3,773,785	+				+0.2
3,773,786	-				+0.4
3,773,786	-				+0.7
3,773,791	+				+1.2
3,773,791	+				+0.1
3,773,791	+				+0.2
3,773,791	+				-0.3
3,773,791	+				+6.0
3,773,792	-				-0.0
3,773,792	-				-1.5
3,773,792	-				-0.2
3,773,792	-				+2.6
3,773,792	-				+1.0
3,773,792	-				-0.0
3,773,792	-				+2.8
3,773,814	-				-1.9
3,773,899	+		IAI47_17765	0.26	-0.0
3,773,941	+		IAI47_17765	0.35	+0.7
3,773,941	+		IAI47_17765	0.35	+0.8
3,773,941	+		IAI47_17765	0.35	-0.2
3,773,942	-		IAI47_17765	0.35	+2.8
3,773,942	-		IAI47_17765	0.35	+0.6
3,773,942	-		IAI47_17765	0.35	+0.8
3,773,947	+		IAI47_17765	0.36	-0.9
3,773,948	-		IAI47_17765	0.36	-1.8
3,774,001	+		IAI47_17765	0.47	-1.6
3,774,001	+		IAI47_17765	0.47	+0.6
3,774,001	+		IAI47_17765	0.47	+1.6
3,774,001	+		IAI47_17765	0.47	+1.0
3,774,001	+		IAI47_17765	0.47	+0.3
3,774,001	+		IAI47_17765	0.47	-0.7
3,774,001	+		IAI47_17765	0.47	+1.2
3,774,001	+		IAI47_17765	0.47	+1.2
3,774,001	+		IAI47_17765	0.47	-0.1
3,774,002	-		IAI47_17765	0.48	-1.7
3,774,002	-		IAI47_17765	0.48	-0.4
3,774,002	-		IAI47_17765	0.48	-2.8
3,774,002	-		IAI47_17765	0.48	-2.4
3,774,002	-		IAI47_17765	0.48	-0.0
3,774,002	-		IAI47_17765	0.48	-3.0
3,774,002	-		IAI47_17765	0.48	-1.5
3,774,002	-		IAI47_17765	0.48	+0.2
3,774,002	-		IAI47_17765	0.48	-2.3
3,774,002	-		IAI47_17765	0.48	-1.0
3,774,002	-		IAI47_17765	0.48	-1.7
3,774,002	-		IAI47_17765	0.48	-0.5
3,774,002	-		IAI47_17765	0.48	+2.0
3,774,002	-		IAI47_17765	0.48	+0.7
3,774,002	-		IAI47_17765	0.48	+0.4
3,774,002	-		IAI47_17765	0.48	+0.4
3,774,002	-		IAI47_17765	0.48	+0.1
3,774,019	+		IAI47_17765	0.51	+0.5
3,774,019	+		IAI47_17765	0.51	+0.2
3,774,020	-		IAI47_17765	0.51	+1.2
3,774,020	-		IAI47_17765	0.51	-0.7
3,774,020	-		IAI47_17765	0.51	+0.3
3,774,020	-		IAI47_17765	0.51	+1.8
3,774,020	-		IAI47_17765	0.51	-0.6
3,774,020	-		IAI47_17765	0.51	+0.2
3,774,080	-		IAI47_17765	0.64	+1.4
3,774,111	+		IAI47_17765	0.70	+1.3
3,774,166	-		IAI47_17765	0.81	+1.4
3,774,166	-		IAI47_17765	0.81	+1.1
3,774,166	-		IAI47_17765	0.81	+1.8
3,774,166	-		IAI47_17765	0.81	+2.0
3,774,166	-		IAI47_17765	0.81	+0.3
3,774,237	+				+0.5
3,774,238	-				+0.4
3,774,266	+				+0.8
3,774,289	+				+0.5
3,774,291	+				-0.5
3,774,292	-				+1.2
3,774,314	+				+0.5
3,774,325	+				+0.3
3,774,326	-				-2.1
3,774,335	+				-0.1
3,774,335	+				+0.9
3,774,336	-				-1.3
3,774,348	-				-0.7
3,774,413	+		IAI47_17770	0.13	-1.6
3,774,413	+		IAI47_17770	0.13	+1.1
3,774,414	-		IAI47_17770	0.13	+2.4
3,774,414	-		IAI47_17770	0.13	+1.5
3,774,414	-		IAI47_17770	0.13	+1.0
3,774,414	-		IAI47_17770	0.13	-0.1
3,774,476	+		IAI47_17770	0.28	+0.6
3,774,476	+		IAI47_17770	0.28	-2.6
3,774,476	+		IAI47_17770	0.28	-0.4
3,774,476	+		IAI47_17770	0.28	+0.7
3,774,476	+		IAI47_17770	0.28	+1.2
3,774,476	+		IAI47_17770	0.28	+0.9
3,774,476	+		IAI47_17770	0.28	-1.7
3,774,476	+		IAI47_17770	0.28	-1.5
3,774,476	+		IAI47_17770	0.28	+0.7
3,774,477	-		IAI47_17770	0.28	-0.1
3,774,477	-		IAI47_17770	0.28	+0.2
3,774,477	-		IAI47_17770	0.28	-0.1
3,774,477	-		IAI47_17770	0.28	-0.5
3,774,477	-		IAI47_17770	0.28	+3.1
3,774,477	-		IAI47_17770	0.28	-1.0
3,774,513	+		IAI47_17770	0.37	-0.7
3,774,513	+		IAI47_17770	0.37	-2.2
3,774,513	+		IAI47_17770	0.37	+1.2
3,774,514	-		IAI47_17770	0.37	+0.8
3,774,514	-		IAI47_17770	0.37	-1.6
3,774,514	-		IAI47_17770	0.37	-0.0
3,774,514	-		IAI47_17770	0.37	+2.1
3,774,515	+		IAI47_17770	0.37	-0.8
3,774,515	+		IAI47_17770	0.37	-1.9
3,774,515	+		IAI47_17770	0.37	+1.6
3,774,515	+		IAI47_17770	0.37	-1.0
3,774,515	+		IAI47_17770	0.37	-2.7
3,774,516	-		IAI47_17770	0.37	-0.8
3,774,516	-		IAI47_17770	0.37	-0.4
3,774,516	-		IAI47_17770	0.37	+2.0
3,774,581	+		IAI47_17770	0.53	+0.4
3,774,582	-		IAI47_17770	0.53	+0.2
3,774,594	+		IAI47_17770	0.56	+0.0
3,774,594	+		IAI47_17770	0.56	+1.4
3,774,594	+		IAI47_17770	0.56	-1.3
3,774,594	+		IAI47_17770	0.56	-1.8
3,774,595	-		IAI47_17770	0.56	-1.9
3,774,601	-		IAI47_17770	0.57	+2.0
3,774,601	-		IAI47_17770	0.57	+2.1
3,774,601	-		IAI47_17770	0.57	-1.0
3,774,601	-		IAI47_17770	0.57	-0.4
3,774,601	-		IAI47_17770	0.57	+1.2
3,774,601	-		IAI47_17770	0.57	-0.9
3,774,664	-		IAI47_17770	0.72	+1.0
3,774,720	+		IAI47_17770	0.85	-0.3
3,774,720	+		IAI47_17770	0.85	-0.2
3,774,722	+		IAI47_17770	0.86	-0.7
3,774,722	+		IAI47_17770	0.86	-0.6
3,774,723	-		IAI47_17770	0.86	+0.7
3,774,723	-		IAI47_17770	0.86	-1.7