Strain Fitness in Pantoea sp. MT58 around IAI47_13190

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,789,590	+				-0.8
2,789,590	+				-0.5
2,789,590	+				+0.8
2,789,590	+				+0.4
2,789,590	+				+0.3
2,789,591	-				+3.1
2,789,591	-				+2.9
2,789,591	-				+2.1
2,789,662	+				+0.2
2,789,663	-				-1.2
2,789,663	-				-0.5
2,789,668	-				-0.6
2,789,668	-				-2.0
2,789,668	-				+1.8
2,789,674	-				+0.4
2,789,687	+				-0.9
2,789,688	-				+0.5
2,789,688	-				+1.8
2,789,720	-				-1.2
2,789,739	+		IAI47_13185	0.13	-1.5
2,789,740	-		IAI47_13185	0.13	+0.5
2,789,774	-		IAI47_13185	0.20	-1.8
2,789,853	+		IAI47_13185	0.35	+0.4
2,789,854	-		IAI47_13185	0.35	-0.2
2,789,854	-		IAI47_13185	0.35	-1.7
2,789,854	-		IAI47_13185	0.35	+0.8
2,789,854	-		IAI47_13185	0.35	+0.3
2,789,854	-		IAI47_13185	0.35	+0.2
2,789,854	-		IAI47_13185	0.35	+0.4
2,789,857	+		IAI47_13185	0.36	-0.4
2,789,857	+		IAI47_13185	0.36	-1.0
2,789,857	+		IAI47_13185	0.36	-0.2
2,789,857	+		IAI47_13185	0.36	-0.0
2,789,857	+		IAI47_13185	0.36	-2.0
2,789,857	+		IAI47_13185	0.36	-1.8
2,789,858	-		IAI47_13185	0.36	-2.2
2,789,858	-		IAI47_13185	0.36	-0.5
2,789,858	-		IAI47_13185	0.36	-1.8
2,789,858	-		IAI47_13185	0.36	-1.4
2,789,858	-		IAI47_13185	0.36	-0.6
2,789,858	-		IAI47_13185	0.36	+0.5
2,789,863	-		IAI47_13185	0.37	+0.9
2,789,883	+		IAI47_13185	0.41	-1.7
2,789,883	+		IAI47_13185	0.41	-0.2
2,789,883	+		IAI47_13185	0.41	-0.5
2,789,883	+		IAI47_13185	0.41	+2.0
2,789,883	+		IAI47_13185	0.41	-2.4
2,789,883	+		IAI47_13185	0.41	-1.4
2,789,884	-		IAI47_13185	0.41	+0.6
2,789,884	-		IAI47_13185	0.41	+0.5
2,789,884	-		IAI47_13185	0.41	+1.1
2,789,884	-		IAI47_13185	0.41	+0.6
2,789,884	-		IAI47_13185	0.41	+0.4
2,789,884	-		IAI47_13185	0.41	-0.0
2,789,884	-		IAI47_13185	0.41	-0.2
2,789,884	-		IAI47_13185	0.41	-0.7
2,789,884	-		IAI47_13185	0.41	-0.4
2,789,884	-		IAI47_13185	0.41	+1.5
2,789,884	-		IAI47_13185	0.41	-0.2
2,789,884	-		IAI47_13185	0.41	+0.0
2,789,884	-		IAI47_13185	0.41	-0.4
2,789,884	-		IAI47_13185	0.41	+0.6
2,789,884	-		IAI47_13185	0.41	+1.4
2,789,884	-		IAI47_13185	0.41	+0.3
2,789,890	+		IAI47_13185	0.42	+2.8
2,789,891	-		IAI47_13185	0.43	-0.5
2,789,934	+		IAI47_13185	0.51	+0.7
2,789,935	-		IAI47_13185	0.51	+1.5
2,789,935	-		IAI47_13185	0.51	-0.5
2,789,935	-		IAI47_13185	0.51	-1.4
2,789,935	-		IAI47_13185	0.51	-0.0
2,789,935	-		IAI47_13185	0.51	-2.8
2,789,935	-		IAI47_13185	0.51	+1.2
2,789,935	-		IAI47_13185	0.51	-0.7
2,789,938	-		IAI47_13185	0.52	+1.7
2,789,953	-		IAI47_13185	0.55	+0.5
2,789,968	+		IAI47_13185	0.58	-0.4
2,789,968	+		IAI47_13185	0.58	-0.0
2,789,969	-		IAI47_13185	0.58	-2.1
2,789,985	+		IAI47_13185	0.61	+2.5
2,789,985	+		IAI47_13185	0.61	-2.3
2,789,985	+		IAI47_13185	0.61	-1.1
2,789,985	+		IAI47_13185	0.61	-1.0
2,789,986	-		IAI47_13185	0.61	-0.7
2,789,986	-		IAI47_13185	0.61	-0.2
2,789,986	-		IAI47_13185	0.61	-0.1
2,789,986	-		IAI47_13185	0.61	-0.0
2,789,986	-		IAI47_13185	0.61	+1.2
2,789,986	-		IAI47_13185	0.61	+0.6
2,789,986	-		IAI47_13185	0.61	+2.8
2,790,016	+		IAI47_13185	0.67	-2.2
2,790,016	+		IAI47_13185	0.67	-1.4
2,790,017	-		IAI47_13185	0.67	-0.4
2,790,036	+		IAI47_13185	0.71	+0.2
2,790,037	-		IAI47_13185	0.71	-2.3
2,790,055	+		IAI47_13185	0.75	+1.8
2,790,094	-		IAI47_13185	0.82	-1.0
2,790,094	-		IAI47_13185	0.82	+2.5
2,790,105	-		IAI47_13185	0.84	+1.5
2,790,105	-		IAI47_13185	0.84	-1.3
2,790,137	+				+0.7
2,790,138	-				+2.2
2,790,138	-				+0.1
2,790,138	-				-0.3
2,790,147	-				+0.4
2,790,147	-				+0.7
2,790,156	-				+0.6
2,790,156	-				+0.4
2,790,184	+				-1.5
2,790,205	+				-0.7
2,790,205	+				-1.2
2,790,205	+				+1.8
2,790,206	-				+0.1
2,790,231	+				+0.8
2,790,231	+				-0.0
2,790,232	-				-1.9
2,790,233	+				+0.5
2,790,291	+				-1.5
2,790,312	+				-0.9
2,790,312	+				+3.2
2,790,312	+				+0.3
2,790,312	+				+3.8
2,790,312	+				+3.0
2,790,312	+				+1.3
2,790,312	+				-0.0
2,790,313	-				-0.5
2,790,313	-				-1.5
2,790,313	-				-0.8
2,790,313	-				-0.2
2,790,313	-				+0.8
2,790,315	+				+1.4
2,790,315	+				+0.5
2,790,315	+				-0.6
2,790,316	-				-0.5
2,790,316	-				+1.9
2,790,316	-				-2.0
2,790,316	-				+0.8
2,790,335	+				+2.1
2,790,358	+				+2.0
2,790,358	+				+0.2
2,790,359	-				+1.3
2,790,457	+				-1.1
2,790,457	+				+1.0
2,790,458	-				-0.5
2,790,467	+				+1.0
2,790,467	+				-1.2
2,790,468	-				-0.2
2,790,507	+				-0.5
2,790,507	+				+2.9
2,790,508	-				-0.4
2,790,508	-				+2.0
2,790,524	+				+0.3
2,790,524	+				+0.7
2,790,545	+				-0.0
2,790,722	+		IAI47_13190	0.18	+1.8
2,790,722	+		IAI47_13190	0.18	+0.4
2,790,722	+		IAI47_13190	0.18	-1.3
2,790,722	+		IAI47_13190	0.18	-0.2
2,790,723	-		IAI47_13190	0.19	+0.3
2,790,723	-		IAI47_13190	0.19	-0.2
2,790,723	-		IAI47_13190	0.19	-0.6
2,790,723	-		IAI47_13190	0.19	+1.0
2,790,723	-		IAI47_13190	0.19	-0.4
2,790,738	+		IAI47_13190	0.20	+0.2
2,790,738	+		IAI47_13190	0.20	+1.0
2,790,738	+		IAI47_13190	0.20	-0.9
2,790,738	+		IAI47_13190	0.20	-1.1
2,790,753	-		IAI47_13190	0.22	-0.5
2,790,790	+		IAI47_13190	0.26	-0.2
2,790,790	+		IAI47_13190	0.26	-1.0
2,790,790	+		IAI47_13190	0.26	+0.4
2,790,790	+		IAI47_13190	0.26	+1.8
2,790,790	+		IAI47_13190	0.26	+1.0
2,790,790	+		IAI47_13190	0.26	-0.2
2,790,790	+		IAI47_13190	0.26	-0.0
2,790,790	+		IAI47_13190	0.26	-2.0
2,790,790	+		IAI47_13190	0.26	+0.8
2,790,791	-		IAI47_13190	0.26	-1.6
2,790,791	-		IAI47_13190	0.26	-1.0
2,790,791	-		IAI47_13190	0.26	-0.6
2,790,791	-		IAI47_13190	0.26	-1.2
2,790,791	-		IAI47_13190	0.26	+0.6
2,790,791	-		IAI47_13190	0.26	+0.7
2,790,791	-		IAI47_13190	0.26	-0.5
2,790,791	-		IAI47_13190	0.26	-0.4
2,790,791	-		IAI47_13190	0.26	+0.4
2,790,791	-		IAI47_13190	0.26	-1.1
2,790,791	-		IAI47_13190	0.26	+0.7
2,790,791	-		IAI47_13190	0.26	+0.2
2,790,791	-		IAI47_13190	0.26	+4.1
2,790,791	-		IAI47_13190	0.26	+0.7
2,790,791	-		IAI47_13190	0.26	+0.1
2,790,826	+		IAI47_13190	0.30	-0.1
2,790,826	+		IAI47_13190	0.30	+1.3
2,790,826	+		IAI47_13190	0.30	+0.5
2,790,827	-		IAI47_13190	0.30	+1.4
2,790,827	-		IAI47_13190	0.30	-0.4
2,791,048	+		IAI47_13190	0.54	+1.6
2,791,048	+		IAI47_13190	0.54	+1.9
2,791,048	+		IAI47_13190	0.54	+2.3
2,791,048	+		IAI47_13190	0.54	-2.6
2,791,048	+		IAI47_13190	0.54	-1.2
2,791,048	+		IAI47_13190	0.54	-0.8
2,791,048	+		IAI47_13190	0.54	+0.3
2,791,048	+		IAI47_13190	0.54	+0.6
2,791,048	+		IAI47_13190	0.54	+0.4
2,791,048	+		IAI47_13190	0.54	-0.8
2,791,048	+		IAI47_13190	0.54	+1.7
2,791,048	+		IAI47_13190	0.54	-1.8
2,791,048	+		IAI47_13190	0.54	+0.4
2,791,048	+		IAI47_13190	0.54	-2.7
2,791,048	+		IAI47_13190	0.54	-1.0
2,791,048	+		IAI47_13190	0.54	-3.4
2,791,049	-		IAI47_13190	0.54	-0.1
2,791,049	-		IAI47_13190	0.54	-0.6
2,791,049	-		IAI47_13190	0.54	+1.9
2,791,049	-		IAI47_13190	0.54	-0.5
2,791,049	-		IAI47_13190	0.54	+0.2
2,791,049	-		IAI47_13190	0.54	+1.5
2,791,049	-		IAI47_13190	0.54	+1.3
2,791,049	-		IAI47_13190	0.54	+0.6
2,791,050	+		IAI47_13190	0.54	-0.5
2,791,051	-		IAI47_13190	0.54	-1.1
2,791,051	-		IAI47_13190	0.54	+0.2
2,791,228	+		IAI47_13190	0.74	-1.0
2,791,229	-		IAI47_13190	0.74	-1.4
2,791,229	-		IAI47_13190	0.74	-0.7
2,791,229	-		IAI47_13190	0.74	-1.9
2,791,229	-		IAI47_13190	0.74	+1.2
2,791,352	+		IAI47_13190	0.87	+1.2
2,791,352	+		IAI47_13190	0.87	-2.0
2,791,353	-		IAI47_13190	0.87	-0.2
2,791,353	-		IAI47_13190	0.87	-0.8
2,791,353	-		IAI47_13190	0.87	+0.3
2,791,368	-		IAI47_13190	0.89	-0.4
2,791,368	-		IAI47_13190	0.89	+2.6
2,791,430	+				-0.8
2,791,430	+				+0.6
2,791,430	+				-0.2
2,791,431	-				+1.4
2,791,431	-				-1.7
2,791,431	-				+0.6
2,791,431	-				-0.9
2,791,446	-				+0.5
2,791,465	+				-0.2
2,791,466	-				+0.7
2,791,466	-				-0.5
2,791,475	+				-0.2
2,791,475	+				+1.1
2,791,500	+				-1.1
2,791,557	+				+1.9
2,791,558	-				-2.9
2,791,558	-				+0.6
2,791,575	+				+0.5
2,791,575	+				-1.0
2,791,582	+				+0.9
2,791,582	+				-1.3
2,791,586	+				+1.0
2,791,592	+				-0.2
2,791,619	+				+1.3
2,791,636	-				+1.2
2,791,641	-				-0.5
2,791,677	+				+0.3
2,791,678	-				-0.6
2,791,678	-				-0.3
2,791,678	-				+1.7
2,791,678	-				-2.0
2,791,678	-				+3.3
2,791,693	+				-0.8
2,791,694	-				+1.2
2,791,694	-				-1.0
2,791,694	-				-1.4
2,791,694	-				-0.4
2,791,694	-				-2.4
2,791,702	+				+0.8
2,791,709	-				-0.6
2,791,709	-				+0.8
2,791,741	+				+0.3
2,791,741	+				-1.8
2,791,742	-				-1.4
2,791,742	-				-0.9
2,791,743	+				+0.2
2,791,743	+				-1.9
2,791,743	+				-1.4
2,791,743	+				-0.5
2,791,743	+				-1.9
2,791,743	+				-2.2
2,791,743	+				-1.5
2,791,743	+				+1.1
2,791,743	+				-1.7
2,791,744	-				-0.8
2,791,744	-				-1.0
2,791,744	-				-0.1
2,791,744	-				+1.8
2,791,744	-				-1.5
2,791,744	-				-1.7
2,791,744	-				-0.8
2,791,747	+				+2.5
2,791,747	+				-0.5
2,791,748	-				+0.2
2,791,762	+				-0.5
2,791,798	+				+0.3
2,791,838	+				-2.1
2,791,838	+				-1.7
2,791,838	+				-2.0
2,791,838	+				-2.2
2,791,838	+				-0.7
2,791,838	+				+0.2
2,791,839	-				-2.1
2,791,839	-				+1.4
2,791,841	-				-0.3
2,791,847	-		IAI47_13195	0.11	-1.5
2,791,902	+		IAI47_13195	0.22	-0.2
2,791,903	-		IAI47_13195	0.22	-1.5
2,791,912	+		IAI47_13195	0.24	-1.5
2,791,913	-		IAI47_13195	0.24	+0.8
2,791,913	-		IAI47_13195	0.24	-1.0
2,791,930	+		IAI47_13195	0.27	-1.2
2,791,930	+		IAI47_13195	0.27	-1.2
2,791,931	-		IAI47_13195	0.27	-0.5
2,791,931	-		IAI47_13195	0.27	-2.0
2,791,931	-		IAI47_13195	0.27	-1.4
2,791,933	+		IAI47_13195	0.28	-1.5
2,791,933	+		IAI47_13195	0.28	-1.2
2,791,933	+		IAI47_13195	0.28	-3.2
2,791,934	-		IAI47_13195	0.28	-1.9
2,791,934	-		IAI47_13195	0.28	+0.2
2,791,934	-		IAI47_13195	0.28	+1.9
2,791,934	-		IAI47_13195	0.28	-1.4
2,791,963	+		IAI47_13195	0.34	-3.5
2,791,963	+		IAI47_13195	0.34	-2.2
2,791,963	+		IAI47_13195	0.34	-0.5
2,791,963	+		IAI47_13195	0.34	-0.2
2,791,963	+		IAI47_13195	0.34	-3.3
2,791,964	-		IAI47_13195	0.34	+0.2
2,791,964	-		IAI47_13195	0.34	-0.8
2,791,977	+		IAI47_13195	0.37	+1.5
2,791,977	+		IAI47_13195	0.37	-3.3
2,791,978	-		IAI47_13195	0.37	-0.8
2,791,978	-		IAI47_13195	0.37	-1.4
2,791,978	-		IAI47_13195	0.37	-1.2
2,792,046	+		IAI47_13195	0.50	-0.3
2,792,047	-		IAI47_13195	0.50	-0.8
2,792,047	-		IAI47_13195	0.50	-0.8
2,792,047	-		IAI47_13195	0.50	-0.9
2,792,092	+		IAI47_13195	0.59	+0.2
2,792,093	-		IAI47_13195	0.60	-0.4
2,792,122	+		IAI47_13195	0.65	-0.8
2,792,122	+		IAI47_13195	0.65	-2.2
2,792,123	-		IAI47_13195	0.65	-1.8
2,792,165	+		IAI47_13195	0.74	-2.4
2,792,166	-		IAI47_13195	0.74	+1.0
2,792,167	+		IAI47_13195	0.74	-0.9
2,792,167	+		IAI47_13195	0.74	-2.1
2,792,167	+		IAI47_13195	0.74	-2.0
2,792,167	+		IAI47_13195	0.74	+0.1
2,792,167	+		IAI47_13195	0.74	-2.4
2,792,168	-		IAI47_13195	0.74	-1.4
2,792,168	-		IAI47_13195	0.74	-0.5
2,792,180	-		IAI47_13195	0.77	-3.8
2,792,180	-		IAI47_13195	0.77	-2.2
2,792,191	+		IAI47_13195	0.79	-0.5
2,792,192	-		IAI47_13195	0.79	-1.2
2,792,192	-		IAI47_13195	0.79	-1.0
2,792,200	+		IAI47_13195	0.81	-3.0
2,792,200	+		IAI47_13195	0.81	-0.5
2,792,200	+		IAI47_13195	0.81	-2.5
2,792,201	-		IAI47_13195	0.81	-1.0
2,792,221	+		IAI47_13195	0.85	+1.0
2,792,222	-		IAI47_13195	0.85	+1.3
2,792,236	+		IAI47_13195	0.88	-2.3
2,792,236	+		IAI47_13195	0.88	-1.9
2,792,236	+		IAI47_13195	0.88	+0.2
2,792,237	-		IAI47_13195	0.88	-1.7
2,792,294	+				-0.2
2,792,295	-				-0.1
2,792,402	+				+0.9
2,792,402	+				+2.1
2,792,403	-				-0.1
2,792,403	-				-3.0
2,792,403	-				-1.5
2,792,419	+				+1.3
2,792,442	+				-1.2
2,792,442	+				-1.6
2,792,442	+				-0.0
2,792,442	+				+0.8
2,792,443	-				-0.7
2,792,463	+				+0.3
2,792,464	-				+1.6
2,792,464	-				-0.3
2,792,464	-				-1.5