Strain Fitness in Pantoea sp. MT58 around IAI47_07250

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,532,739	+				-0.9
1,532,739	+				+0.8
1,532,739	+				-1.5
1,532,739	+				+1.0
1,532,740	-				-0.5
1,532,740	-				+0.4
1,532,740	-				+0.1
1,532,743	+				-1.3
1,532,743	+				-0.4
1,532,743	+				-0.6
1,532,743	+				-0.3
1,532,744	-				+0.7
1,532,744	-				-0.3
1,532,744	-				-0.8
1,532,744	-				-1.5
1,532,744	-				-0.9
1,532,744	-				+2.0
1,532,744	-				+0.7
1,532,749	-				+1.0
1,532,752	+				+1.0
1,532,752	+				-0.8
1,532,752	+				-1.1
1,532,752	+				-0.5
1,532,752	+				+0.8
1,532,752	+				-0.1
1,532,753	-				-0.3
1,532,753	-				+1.2
1,532,753	-				-0.2
1,532,753	-				-0.0
1,532,753	-				-1.6
1,532,753	-				+0.1
1,532,773	+				+1.1
1,532,773	+				+1.2
1,532,774	-				+0.0
1,532,774	-				-1.0
1,532,774	-				+0.8
1,532,824	+				-0.4
1,532,825	-				+0.1
1,532,830	-				-2.0
1,532,835	+				+2.1
1,532,836	-				+0.6
1,533,103	-				+1.0
1,533,103	-				-0.0
1,533,118	+				+1.3
1,533,119	-				-0.5
1,533,119	-				-0.4
1,533,132	+				+0.9
1,533,132	+				-1.0
1,533,132	+				+0.7
1,533,132	+				+0.4
1,533,133	-				-1.0
1,533,133	-				+0.5
1,533,134	+				-1.0
1,533,134	+				-1.7
1,533,135	-				+0.4
1,533,139	+				-1.6
1,533,139	+				+0.1
1,533,139	+				+0.4
1,533,142	+				+0.4
1,533,193	+		IAI47_07245	0.23	+1.0
1,533,193	+		IAI47_07245	0.23	-0.7
1,533,193	+		IAI47_07245	0.23	+1.0
1,533,194	-		IAI47_07245	0.24	-1.1
1,533,194	-		IAI47_07245	0.24	+0.5
1,533,204	+		IAI47_07245	0.27	-1.5
1,533,205	-		IAI47_07245	0.27	+0.5
1,533,236	-		IAI47_07245	0.37	+3.1
1,533,236	-		IAI47_07245	0.37	-0.5
1,533,245	+		IAI47_07245	0.40	-1.4
1,533,245	+		IAI47_07245	0.40	+1.3
1,533,245	+		IAI47_07245	0.40	+0.1
1,533,308	+		IAI47_07245	0.60	+0.1
1,533,308	+		IAI47_07245	0.60	-1.0
1,533,309	-		IAI47_07245	0.60	-2.4
1,533,309	-		IAI47_07245	0.60	-2.7
1,533,315	+		IAI47_07245	0.62	+0.2
1,533,315	+		IAI47_07245	0.62	+0.5
1,533,316	-		IAI47_07245	0.63	+0.3
1,533,316	-		IAI47_07245	0.63	+2.3
1,533,337	+		IAI47_07245	0.69	-0.1
1,533,337	+		IAI47_07245	0.69	+1.6
1,533,337	+		IAI47_07245	0.69	-0.9
1,533,337	+		IAI47_07245	0.69	+0.8
1,533,337	+		IAI47_07245	0.69	+0.7
1,533,338	-		IAI47_07245	0.70	-0.1
1,533,338	-		IAI47_07245	0.70	+0.0
1,533,338	-		IAI47_07245	0.70	+0.7
1,533,338	-		IAI47_07245	0.70	-1.5
1,533,338	-		IAI47_07245	0.70	+2.9
1,533,338	-		IAI47_07245	0.70	+0.8
1,533,338	-		IAI47_07245	0.70	-0.9
1,533,338	-		IAI47_07245	0.70	-0.2
1,533,354	+		IAI47_07245	0.75	-0.9
1,533,354	+		IAI47_07245	0.75	+0.1
1,533,354	+		IAI47_07245	0.75	-0.3
1,533,354	+		IAI47_07245	0.75	-1.3
1,533,354	+		IAI47_07245	0.75	+0.0
1,533,354	+		IAI47_07245	0.75	+0.4
1,533,355	-		IAI47_07245	0.75	+0.0
1,533,355	-		IAI47_07245	0.75	+1.8
1,533,396	+		IAI47_07245	0.88	-2.9
1,533,409	-				-2.1
1,533,409	-				+2.8
1,533,431	+				+3.5
1,533,431	+				+1.1
1,533,441	+				+0.9
1,533,441	+				+0.6
1,533,441	+				-1.7
1,533,442	-				-0.5
1,533,442	-				-1.1
1,533,442	-				-0.1
1,533,445	+				-1.2
1,533,445	+				-1.3
1,533,445	+				-1.6
1,533,445	+				-1.5
1,533,446	-				-2.1
1,533,446	-				-0.5
1,533,446	-				+0.0
1,533,446	-				-0.8
1,533,446	-				+1.5
1,533,446	-				+2.1
1,533,446	-				+1.4
1,533,497	-				+1.1
1,533,512	+				+1.4
1,533,534	+				-0.0
1,533,535	-				+0.7
1,533,561	+				+0.5
1,533,562	-				+0.5
1,533,562	-				+0.4
1,533,573	+				-2.8
1,533,594	+				+1.3
1,533,594	+				-1.2
1,533,594	+				+0.4
1,533,594	+				-0.9
1,533,632	+				+1.3
1,533,632	+				+1.1
1,533,632	+				+0.7
1,533,632	+				+1.8
1,533,633	-				-0.7
1,533,633	-				+0.8
1,533,642	+				+0.2
1,533,649	+				-0.3
1,533,649	+				+0.2
1,533,649	+				+2.3
1,533,650	-				-1.8
1,533,650	-				-0.0
1,533,650	-				-1.5
1,533,673	-				+0.7
1,533,689	-				-1.3
1,533,689	-				+0.7
1,533,748	-		IAI47_07250	0.43	-1.0
1,533,748	-		IAI47_07250	0.43	-2.9
1,533,748	-		IAI47_07250	0.43	-0.9
1,533,748	-		IAI47_07250	0.43	-1.9
1,533,748	-		IAI47_07250	0.43	-3.0
1,533,748	-		IAI47_07250	0.43	-0.6
1,533,748	-		IAI47_07250	0.43	-2.5
1,533,810	+				-0.4
1,533,810	+				-1.8
1,533,810	+				-0.4
1,533,810	+				-3.8
1,533,810	+				-1.9
1,533,810	+				+1.9
1,533,810	+				-2.5
1,533,814	-				+0.8
1,533,814	-				+0.1
1,533,872	+				-1.4
1,533,873	-				+1.0
1,533,892	+				-0.8
1,533,892	+				+0.2
1,533,892	+				-2.3
1,533,893	-				-1.0
1,533,893	-				+0.5
1,533,893	-				-0.3
1,533,905	+				-0.2
1,533,905	+				-2.2
1,533,905	+				+0.3
1,533,905	+				+0.1
1,533,905	+				-1.5
1,533,905	+				+0.2
1,533,906	-				-1.1
1,533,906	-				-1.6
1,533,906	-				-2.2
1,533,906	-				-0.6
1,533,906	-				-0.7
1,533,906	-				+0.2
1,533,906	-				-1.6
1,533,961	-				-1.5
1,534,030	-				-0.9
1,534,050	-				+0.5
1,534,110	-				+0.9
1,534,159	+				+2.3
1,534,161	+				+0.1
1,534,353	+		IAI47_07255	0.20	+1.7
1,534,354	-		IAI47_07255	0.21	-0.1
1,534,354	-		IAI47_07255	0.21	+1.8
1,534,365	+		IAI47_07255	0.22	-1.0
1,534,377	+		IAI47_07255	0.23	+1.9
1,534,377	+		IAI47_07255	0.23	-2.2
1,534,378	-		IAI47_07255	0.23	+1.8
1,534,401	-		IAI47_07255	0.25	-1.5
1,534,421	-		IAI47_07255	0.27	-0.6
1,534,421	-		IAI47_07255	0.27	+0.1
1,534,421	-		IAI47_07255	0.27	-0.3
1,534,516	+		IAI47_07255	0.35	-1.2
1,534,516	+		IAI47_07255	0.35	-0.1
1,534,516	+		IAI47_07255	0.35	+0.1
1,534,516	+		IAI47_07255	0.35	+0.9
1,534,516	+		IAI47_07255	0.35	-0.8
1,534,516	+		IAI47_07255	0.35	-0.7
1,534,516	+		IAI47_07255	0.35	+0.8
1,534,516	+		IAI47_07255	0.35	-0.1
1,534,516	+		IAI47_07255	0.35	-1.3
1,534,517	-		IAI47_07255	0.35	+0.9
1,534,517	-		IAI47_07255	0.35	+0.4
1,534,517	-		IAI47_07255	0.35	+1.5
1,534,517	-		IAI47_07255	0.35	+2.3
1,534,517	-		IAI47_07255	0.35	+0.4
1,534,518	+		IAI47_07255	0.35	-0.2
1,534,591	+		IAI47_07255	0.42	-1.6
1,534,612	+		IAI47_07255	0.44	+1.2
1,534,612	+		IAI47_07255	0.44	-1.3
1,534,613	-		IAI47_07255	0.44	+1.9
1,534,613	-		IAI47_07255	0.44	-1.2
1,534,707	+		IAI47_07255	0.52	+1.7
1,534,708	-		IAI47_07255	0.52	+3.1
1,534,708	-		IAI47_07255	0.52	+1.2
1,534,717	+		IAI47_07255	0.53	+1.1
1,534,717	+		IAI47_07255	0.53	-0.2
1,534,718	-		IAI47_07255	0.53	-0.8
1,534,718	-		IAI47_07255	0.53	-0.3
1,534,718	-		IAI47_07255	0.53	-2.5