Strain Fitness in Pantoea sp. MT58 around IAI47_05350

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,132,017	+		IAI47_05345	0.38	+0.0
1,132,017	+		IAI47_05345	0.38	-0.4
1,132,017	+		IAI47_05345	0.38	-1.7
1,132,017	+		IAI47_05345	0.38	+4.1
1,132,017	+		IAI47_05345	0.38	-2.2
1,132,018	-		IAI47_05345	0.38	+3.3
1,132,018	-		IAI47_05345	0.38	-1.6
1,132,020	+		IAI47_05345	0.38	-0.3
1,132,020	+		IAI47_05345	0.38	-1.1
1,132,020	+		IAI47_05345	0.38	-0.0
1,132,021	-		IAI47_05345	0.38	-0.1
1,132,021	-		IAI47_05345	0.38	-0.0
1,132,080	+		IAI47_05345	0.43	-0.1
1,132,081	-		IAI47_05345	0.43	-0.1
1,132,081	-		IAI47_05345	0.43	+1.5
1,132,115	-		IAI47_05345	0.46	-0.4
1,132,185	-		IAI47_05345	0.52	-1.3
1,132,199	+		IAI47_05345	0.53	+2.2
1,132,200	-		IAI47_05345	0.54	-1.7
1,132,227	+		IAI47_05345	0.56	-2.2
1,132,227	+		IAI47_05345	0.56	-0.1
1,132,227	+		IAI47_05345	0.56	-0.3
1,132,227	+		IAI47_05345	0.56	-0.3
1,132,227	+		IAI47_05345	0.56	+0.3
1,132,228	-		IAI47_05345	0.56	+2.1
1,132,228	-		IAI47_05345	0.56	+0.6
1,132,228	-		IAI47_05345	0.56	+0.7
1,132,348	-		IAI47_05345	0.66	+1.7
1,132,359	+		IAI47_05345	0.67	-1.1
1,132,360	-		IAI47_05345	0.67	+1.3
1,132,360	-		IAI47_05345	0.67	+0.6
1,132,371	+		IAI47_05345	0.68	-0.1
1,132,373	+		IAI47_05345	0.68	-2.2
1,132,373	+		IAI47_05345	0.68	-0.2
1,132,373	+		IAI47_05345	0.68	-1.2
1,132,373	+		IAI47_05345	0.68	+0.3
1,132,374	-		IAI47_05345	0.68	+0.9
1,132,374	-		IAI47_05345	0.68	-2.1
1,132,374	-		IAI47_05345	0.68	+0.7
1,132,374	-		IAI47_05345	0.68	+3.4
1,132,374	-		IAI47_05345	0.68	-1.2
1,132,374	-		IAI47_05345	0.68	+1.7
1,132,374	-		IAI47_05345	0.68	-0.3
1,132,374	-		IAI47_05345	0.68	-1.3
1,132,374	-		IAI47_05345	0.68	-1.6
1,132,374	-		IAI47_05345	0.68	+2.0
1,132,374	-		IAI47_05345	0.68	-0.0
1,132,374	-		IAI47_05345	0.68	-1.6
1,132,374	-		IAI47_05345	0.68	-1.0
1,132,374	-		IAI47_05345	0.68	+2.1
1,132,403	+		IAI47_05345	0.71	+0.1
1,132,403	+		IAI47_05345	0.71	-0.7
1,132,403	+		IAI47_05345	0.71	-1.2
1,132,404	-		IAI47_05345	0.71	+1.7
1,132,404	-		IAI47_05345	0.71	+0.9
1,132,404	-		IAI47_05345	0.71	-0.1
1,132,404	-		IAI47_05345	0.71	-1.1
1,132,404	-		IAI47_05345	0.71	+0.9
1,132,407	+		IAI47_05345	0.71	+1.2
1,132,407	+		IAI47_05345	0.71	-1.1
1,132,407	+		IAI47_05345	0.71	-2.2
1,132,408	-		IAI47_05345	0.71	-1.3
1,132,408	-		IAI47_05345	0.71	+1.7
1,132,408	-		IAI47_05345	0.71	+0.1
1,132,579	+		IAI47_05345	0.86	+0.2
1,132,579	+		IAI47_05345	0.86	+0.7
1,132,579	+		IAI47_05345	0.86	-0.7
1,132,579	+		IAI47_05345	0.86	+0.3
1,132,579	+		IAI47_05345	0.86	+1.1
1,132,579	+		IAI47_05345	0.86	-2.1
1,132,579	+		IAI47_05345	0.86	-0.6
1,132,579	+		IAI47_05345	0.86	-0.8
1,132,580	-		IAI47_05345	0.86	-0.3
1,132,580	-		IAI47_05345	0.86	-0.8
1,132,580	-		IAI47_05345	0.86	+0.1
1,132,616	+		IAI47_05345	0.89	+0.5
1,132,616	+		IAI47_05345	0.89	-0.8
1,132,624	-				-0.3
1,132,634	+				+0.9
1,132,634	+				-0.1
1,132,635	-				-0.5
1,132,693	+				+0.4
1,132,693	+				-0.4
1,132,694	-				-1.0
1,132,723	+				+1.4
1,132,724	-				+1.5
1,132,727	+				+1.3
1,132,727	+				-1.4
1,132,727	+				-1.0
1,132,727	+				-0.3
1,132,727	+				-0.3
1,132,728	-				-1.6
1,132,728	-				-1.2
1,132,728	-				+0.9
1,132,728	-				+1.4
1,132,728	-				-1.4
1,132,728	-				+2.4
1,132,728	-				-3.1
1,132,734	+				+0.2
1,132,734	+				-0.3
1,132,734	+				-0.3
1,132,734	+				+0.6
1,132,734	+				-0.8
1,132,734	+				+3.3
1,132,734	+				+3.1
1,132,734	+				+0.2
1,132,734	+				+0.5
1,132,734	+				-0.1
1,132,734	+				-1.5
1,132,734	+				+1.1
1,132,734	+				-3.0
1,132,735	-				+0.8
1,132,735	-				-1.4
1,132,735	-				-0.7
1,132,735	-				-1.1
1,132,735	-				+1.3
1,132,735	-				-1.3
1,132,735	-				-0.9
1,132,735	-				+0.0
1,132,735	-				+0.8
1,132,735	-				+0.5
1,132,762	+				+1.8
1,132,764	+				+2.3
1,132,764	+				-2.6
1,132,764	+				+0.5
1,132,764	+				+0.3
1,132,764	+				-0.1
1,132,764	+				-1.8
1,132,764	+				-3.0
1,132,764	+				+0.2
1,132,764	+				-2.1
1,132,764	+				-1.8
1,132,765	-				-0.2
1,132,765	-				+0.0
1,132,765	-				+0.7
1,132,765	-				-1.5
1,132,765	-				-1.1
1,132,765	-				-0.7
1,132,765	-				+1.0
1,132,765	-				-0.7
1,132,765	-				+3.1
1,132,768	+				+0.7
1,132,768	+				+0.8
1,132,768	+				-1.6
1,132,769	-				+0.6
1,132,865	+				+2.1
1,132,865	+				-1.0
1,132,865	+				-0.9
1,132,865	+				+0.0
1,132,865	+				-0.3
1,132,865	+				-0.1
1,132,865	+				-0.6
1,132,893	-				-0.7
1,132,893	-				+0.7
1,132,893	-				-0.6
1,132,893	-				+0.5
1,132,893	-				-0.3
1,132,893	-				-0.8
1,132,894	+				-0.4
1,132,894	+				-0.5
1,132,894	+				+0.8
1,132,894	+				+0.9
1,132,894	+				-1.1
1,132,894	+				-1.7
1,132,894	+				+0.7
1,132,894	+				-1.1
1,132,894	+				-0.8
1,132,894	+				+0.3
1,132,895	-				-0.6
1,132,895	-				-0.1
1,132,895	-				-1.6
1,132,895	-				-1.1
1,132,895	-				-0.3
1,132,895	-				+0.6
1,132,895	-				+0.5
1,132,895	-				+0.1
1,132,895	-				+0.0
1,132,897	+				-0.4
1,132,897	+				-0.7
1,132,897	+				+1.4
1,132,897	+				+1.5
1,132,897	+				-1.8
1,132,898	-				+0.0
1,132,898	-				+0.2
1,132,929	+				-1.3
1,132,929	+				+0.9
1,132,929	+				-2.2
1,132,929	+				+0.0
1,132,930	-				-0.3
1,133,001	+				+0.7
1,133,002	-				+1.0
1,133,002	-				+1.0
1,133,016	-				-1.8
1,133,016	-				+0.1
1,133,016	-				+0.9
1,133,016	-				-1.2
1,133,039	-				+0.7
1,133,136	+				-3.1
1,133,136	+				-0.3
1,133,136	+				-0.1
1,133,136	+				+2.7
1,133,136	+				+0.4
1,133,136	+				-0.8
1,133,137	-				-0.4
1,133,137	-				-2.2
1,133,137	-				-1.1
1,133,137	-				-0.6
1,133,137	-				+0.5
1,133,148	+				-3.5
1,133,149	-				+0.6
1,133,158	+				+0.4
1,133,158	+				+0.7
1,133,158	+				+1.3
1,133,158	+				-0.1
1,133,159	-				-0.2
1,133,159	-				+0.6
1,133,214	+		IAI47_05350	0.11	-0.3
1,133,380	-		IAI47_05350	0.19	-1.4
1,133,416	+		IAI47_05350	0.21	+0.1
1,133,417	-		IAI47_05350	0.21	-0.6
1,133,482	+		IAI47_05350	0.24	+1.1
1,133,531	+		IAI47_05350	0.27	-0.3
1,133,531	+		IAI47_05350	0.27	+0.2
1,133,531	+		IAI47_05350	0.27	+1.2
1,133,531	+		IAI47_05350	0.27	-1.7
1,133,532	-		IAI47_05350	0.27	-3.0
1,133,532	-		IAI47_05350	0.27	+1.5
1,133,532	-		IAI47_05350	0.27	+0.9
1,133,532	-		IAI47_05350	0.27	-2.7
1,133,532	-		IAI47_05350	0.27	-0.3
1,133,625	+		IAI47_05350	0.31	-0.9
1,133,625	+		IAI47_05350	0.31	-1.4
1,133,626	-		IAI47_05350	0.31	-1.1
1,133,662	+		IAI47_05350	0.33	-0.6
1,133,662	+		IAI47_05350	0.33	-0.5
1,133,682	+		IAI47_05350	0.34	-1.1
1,133,682	+		IAI47_05350	0.34	-2.3
1,133,682	+		IAI47_05350	0.34	-0.1
1,133,682	+		IAI47_05350	0.34	+0.9
1,133,712	+		IAI47_05350	0.36	+0.8
1,133,712	+		IAI47_05350	0.36	+0.6
1,133,712	+		IAI47_05350	0.36	+2.0
1,133,712	+		IAI47_05350	0.36	-0.6
1,133,712	+		IAI47_05350	0.36	+0.7
1,133,712	+		IAI47_05350	0.36	+0.2
1,133,712	+		IAI47_05350	0.36	-3.5
1,133,712	+		IAI47_05350	0.36	-0.5
1,133,713	-		IAI47_05350	0.36	-1.7
1,133,713	-		IAI47_05350	0.36	+2.4
1,133,713	-		IAI47_05350	0.36	-1.3
1,133,713	-		IAI47_05350	0.36	-1.1
1,133,790	+		IAI47_05350	0.39	+0.5
1,133,790	+		IAI47_05350	0.39	+1.2
1,133,790	+		IAI47_05350	0.39	-1.2
1,133,790	+		IAI47_05350	0.39	+1.1
1,133,790	+		IAI47_05350	0.39	+0.7
1,133,790	+		IAI47_05350	0.39	+0.2
1,133,790	+		IAI47_05350	0.39	-0.3
1,133,790	+		IAI47_05350	0.39	+0.0
1,133,791	-		IAI47_05350	0.40	-0.2
1,133,791	-		IAI47_05350	0.40	-0.4
1,133,791	-		IAI47_05350	0.40	-1.0
1,133,791	-		IAI47_05350	0.40	+1.1
1,133,794	+		IAI47_05350	0.40	-0.8
1,133,795	-		IAI47_05350	0.40	-2.7
1,133,836	+		IAI47_05350	0.42	-1.2
1,133,836	+		IAI47_05350	0.42	+0.7
1,133,836	+		IAI47_05350	0.42	+0.7
1,133,837	-		IAI47_05350	0.42	-1.2
1,133,837	-		IAI47_05350	0.42	-0.6
1,133,837	-		IAI47_05350	0.42	-1.6
1,133,837	-		IAI47_05350	0.42	-0.2
1,133,837	-		IAI47_05350	0.42	-2.7
1,133,837	-		IAI47_05350	0.42	-2.3
1,133,837	-		IAI47_05350	0.42	-2.7
1,133,894	-		IAI47_05350	0.45	-0.3
1,133,899	-		IAI47_05350	0.45	-1.3
1,133,899	-		IAI47_05350	0.45	-2.2
1,133,899	-		IAI47_05350	0.45	-0.5
1,133,950	+		IAI47_05350	0.47	+0.4
1,134,027	+		IAI47_05350	0.51	-2.3
1,134,027	+		IAI47_05350	0.51	-0.1
1,134,027	+		IAI47_05350	0.51	-1.6
1,134,027	+		IAI47_05350	0.51	-1.1
1,134,028	-		IAI47_05350	0.51	-0.7
1,134,028	-		IAI47_05350	0.51	+0.9
1,134,028	-		IAI47_05350	0.51	-1.6
1,134,028	-		IAI47_05350	0.51	+0.3
1,134,028	-		IAI47_05350	0.51	+0.2
1,134,028	-		IAI47_05350	0.51	-0.2
1,134,028	-		IAI47_05350	0.51	-0.1
1,134,028	-		IAI47_05350	0.51	+0.6
1,134,061	-		IAI47_05350	0.53	-1.2
1,134,061	-		IAI47_05350	0.53	-0.8
1,134,129	+		IAI47_05350	0.56	-1.1
1,134,129	+		IAI47_05350	0.56	+0.2
1,134,160	-		IAI47_05350	0.58	+2.7
1,134,160	-		IAI47_05350	0.58	-0.4
1,134,178	+		IAI47_05350	0.59	-0.6
1,134,178	+		IAI47_05350	0.59	+0.7
1,134,233	-		IAI47_05350	0.62	+1.7
1,134,277	+		IAI47_05350	0.64	-1.6
1,134,278	-		IAI47_05350	0.64	-0.7
1,134,278	-		IAI47_05350	0.64	-0.2
1,134,292	+		IAI47_05350	0.65	+0.4
1,134,317	-		IAI47_05350	0.66	-1.6
1,134,332	-		IAI47_05350	0.67	+0.2
1,134,378	+		IAI47_05350	0.69	-0.4
1,134,378	+		IAI47_05350	0.69	-2.7
1,134,379	-		IAI47_05350	0.69	-0.3
1,134,379	-		IAI47_05350	0.69	+1.0
1,134,379	-		IAI47_05350	0.69	+1.0
1,134,443	-		IAI47_05350	0.72	+2.0
1,134,443	-		IAI47_05350	0.72	-2.0
1,134,443	-		IAI47_05350	0.72	-2.3
1,134,443	-		IAI47_05350	0.72	-0.1
1,134,443	-		IAI47_05350	0.72	+1.3
1,134,443	-		IAI47_05350	0.72	-1.8
1,134,449	-		IAI47_05350	0.72	+1.6
1,134,449	-		IAI47_05350	0.72	-1.7
1,134,456	+		IAI47_05350	0.73	-0.9
1,134,457	-		IAI47_05350	0.73	+0.6
1,134,457	-		IAI47_05350	0.73	-0.6
1,134,457	-		IAI47_05350	0.73	-0.4
1,134,457	-		IAI47_05350	0.73	+1.7
1,134,457	-		IAI47_05350	0.73	+2.3
1,134,472	+		IAI47_05350	0.74	-1.4
1,134,544	+		IAI47_05350	0.77	-0.2
1,134,552	+		IAI47_05350	0.78	-1.2
1,134,552	+		IAI47_05350	0.78	-1.6
1,134,552	+		IAI47_05350	0.78	+1.3
1,134,552	+		IAI47_05350	0.78	-2.8
1,134,552	+		IAI47_05350	0.78	-0.8
1,134,552	+		IAI47_05350	0.78	-2.3
1,134,552	+		IAI47_05350	0.78	-0.5
1,134,552	+		IAI47_05350	0.78	+0.3
1,134,552	+		IAI47_05350	0.78	+1.2
1,134,552	+		IAI47_05350	0.78	-0.3
1,134,552	+		IAI47_05350	0.78	-0.6
1,134,552	+		IAI47_05350	0.78	+0.0
1,134,553	-		IAI47_05350	0.78	+1.6
1,134,553	-		IAI47_05350	0.78	-0.3
1,134,553	-		IAI47_05350	0.78	+0.3
1,134,553	-		IAI47_05350	0.78	-0.6
1,134,553	-		IAI47_05350	0.78	-2.7
1,134,553	-		IAI47_05350	0.78	+0.2
1,134,553	-		IAI47_05350	0.78	+0.4
1,134,553	-		IAI47_05350	0.78	+0.5
1,134,553	-		IAI47_05350	0.78	-1.3
1,134,553	-		IAI47_05350	0.78	-2.6
1,134,553	-		IAI47_05350	0.78	-2.8
1,134,553	-		IAI47_05350	0.78	-0.4
1,134,553	-		IAI47_05350	0.78	+0.7
1,134,553	-		IAI47_05350	0.78	+0.7
1,134,553	-		IAI47_05350	0.78	+1.9
1,134,589	+		IAI47_05350	0.79	+0.6
1,134,637	+		IAI47_05350	0.82	-0.3
1,134,685	+		IAI47_05350	0.84	-0.6
1,134,685	+		IAI47_05350	0.84	+0.2
1,134,685	+		IAI47_05350	0.84	+0.5
1,134,686	-		IAI47_05350	0.84	-0.8
1,134,687	+		IAI47_05350	0.84	+1.0
1,134,687	+		IAI47_05350	0.84	+1.4
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