Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19295 and BWI76_RS19300 are separated by 415 nucleotides BWI76_RS19300 and BWI76_RS19305 are separated by 10 nucleotides BWI76_RS19305 and BWI76_RS19310 overlap by 29 nucleotides
BWI76_RS19295: BWI76_RS19295 - transcriptional regulator CadC, at 4,019,460 to 4,020,266
_RS19295
BWI76_RS19300: BWI76_RS19300 - ABC transporter ATP-binding protein, at 4,020,682 to 4,021,455
_RS19300
BWI76_RS19305: BWI76_RS19305 - ABC transporter ATP-binding protein, at 4,021,466 to 4,022,329
_RS19305
BWI76_RS19310: BWI76_RS19310 - ABC transporter permease, at 4,022,301 to 4,023,206
_RS19310
Position (kb)
4020
4021
4022 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4019.711 kb on + strand, within BWI76_RS19295 at 4019.719 kb on - strand, within BWI76_RS19295 at 4019.768 kb on + strand at 4019.768 kb on + strand, within BWI76_RS19295 at 4019.768 kb on + strand, within BWI76_RS19295 at 4019.775 kb on + strand, within BWI76_RS19295 at 4019.775 kb on + strand, within BWI76_RS19295 at 4019.775 kb on + strand at 4019.775 kb on + strand, within BWI76_RS19295 at 4019.775 kb on + strand, within BWI76_RS19295 at 4019.775 kb on + strand, within BWI76_RS19295 at 4019.781 kb on - strand, within BWI76_RS19295 at 4019.783 kb on - strand, within BWI76_RS19295 at 4019.783 kb on - strand, within BWI76_RS19295 at 4019.799 kb on - strand, within BWI76_RS19295 at 4019.801 kb on + strand, within BWI76_RS19295 at 4019.801 kb on + strand, within BWI76_RS19295 at 4019.803 kb on + strand, within BWI76_RS19295 at 4019.809 kb on - strand, within BWI76_RS19295 at 4019.809 kb on - strand, within BWI76_RS19295 at 4019.809 kb on - strand, within BWI76_RS19295 at 4019.809 kb on - strand, within BWI76_RS19295 at 4019.809 kb on - strand, within BWI76_RS19295 at 4019.841 kb on + strand, within BWI76_RS19295 at 4019.858 kb on + strand, within BWI76_RS19295 at 4019.858 kb on + strand, within BWI76_RS19295 at 4019.864 kb on + strand, within BWI76_RS19295 at 4019.866 kb on - strand, within BWI76_RS19295 at 4019.866 kb on - strand, within BWI76_RS19295 at 4019.866 kb on - strand, within BWI76_RS19295 at 4019.866 kb on - strand at 4019.867 kb on - strand, within BWI76_RS19295 at 4019.872 kb on - strand, within BWI76_RS19295 at 4019.872 kb on - strand, within BWI76_RS19295 at 4019.899 kb on - strand, within BWI76_RS19295 at 4019.950 kb on - strand, within BWI76_RS19295 at 4019.960 kb on + strand, within BWI76_RS19295 at 4019.962 kb on - strand, within BWI76_RS19295 at 4019.962 kb on - strand, within BWI76_RS19295 at 4020.022 kb on - strand, within BWI76_RS19295 at 4020.045 kb on - strand, within BWI76_RS19295 at 4020.068 kb on + strand at 4020.071 kb on - strand, within BWI76_RS19295 at 4020.074 kb on - strand, within BWI76_RS19295 at 4020.076 kb on - strand, within BWI76_RS19295 at 4020.076 kb on - strand, within BWI76_RS19295 at 4020.076 kb on - strand, within BWI76_RS19295 at 4020.076 kb on - strand, within BWI76_RS19295 at 4020.076 kb on - strand at 4020.076 kb on - strand, within BWI76_RS19295 at 4020.076 kb on - strand, within BWI76_RS19295 at 4020.076 kb on - strand, within BWI76_RS19295 at 4020.076 kb on - strand, within BWI76_RS19295 at 4020.076 kb on - strand, within BWI76_RS19295 at 4020.080 kb on + strand, within BWI76_RS19295 at 4020.081 kb on - strand, within BWI76_RS19295 at 4020.081 kb on - strand, within BWI76_RS19295 at 4020.081 kb on - strand, within BWI76_RS19295 at 4020.088 kb on - strand, within BWI76_RS19295 at 4020.088 kb on - strand, within BWI76_RS19295 at 4020.093 kb on - strand, within BWI76_RS19295 at 4020.114 kb on + strand, within BWI76_RS19295 at 4020.137 kb on - strand, within BWI76_RS19295 at 4020.152 kb on + strand, within BWI76_RS19295 at 4020.212 kb on + strand at 4020.236 kb on + strand at 4020.296 kb on - strand at 4020.382 kb on + strand at 4020.382 kb on + strand at 4020.388 kb on - strand at 4020.390 kb on - strand at 4020.590 kb on - strand at 4020.658 kb on + strand at 4020.658 kb on + strand at 4020.662 kb on - strand at 4020.662 kb on - strand at 4020.675 kb on + strand at 4020.688 kb on - strand at 4020.700 kb on - strand at 4020.700 kb on - strand at 4020.731 kb on + strand at 4020.731 kb on + strand at 4020.739 kb on - strand at 4020.748 kb on + strand at 4020.762 kb on + strand, within BWI76_RS19300 at 4020.770 kb on + strand, within BWI76_RS19300 at 4020.770 kb on + strand, within BWI76_RS19300 at 4020.770 kb on + strand, within BWI76_RS19300 at 4020.778 kb on - strand, within BWI76_RS19300 at 4020.873 kb on + strand, within BWI76_RS19300 at 4021.002 kb on - strand, within BWI76_RS19300 at 4021.052 kb on - strand, within BWI76_RS19300 at 4021.166 kb on - strand, within BWI76_RS19300 at 4021.275 kb on + strand, within BWI76_RS19300 at 4021.917 kb on + strand, within BWI76_RS19305 at 4021.948 kb on + strand, within BWI76_RS19305 at 4022.054 kb on + strand, within BWI76_RS19305 at 4022.157 kb on + strand, within BWI76_RS19305 at 4022.241 kb on - strand, within BWI76_RS19305 at 4022.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 4,019,711 + BWI76_RS19295 0.31 -0.4 4,019,719 - BWI76_RS19295 0.32 +0.5 4,019,768 + -1.3 4,019,768 + BWI76_RS19295 0.38 +1.7 4,019,768 + BWI76_RS19295 0.38 -0.5 4,019,775 + BWI76_RS19295 0.39 +1.5 4,019,775 + BWI76_RS19295 0.39 -0.3 4,019,775 + +1.3 4,019,775 + BWI76_RS19295 0.39 -0.3 4,019,775 + BWI76_RS19295 0.39 -2.2 4,019,775 + BWI76_RS19295 0.39 +0.3 4,019,781 - BWI76_RS19295 0.40 +0.7 4,019,783 - BWI76_RS19295 0.40 -0.4 4,019,783 - BWI76_RS19295 0.40 -0.1 4,019,799 - BWI76_RS19295 0.42 -0.3 4,019,801 + BWI76_RS19295 0.42 +0.7 4,019,801 + BWI76_RS19295 0.42 +0.8 4,019,803 + BWI76_RS19295 0.43 +2.1 4,019,809 - BWI76_RS19295 0.43 +0.9 4,019,809 - BWI76_RS19295 0.43 +0.2 4,019,809 - BWI76_RS19295 0.43 +0.3 4,019,809 - BWI76_RS19295 0.43 +0.1 4,019,809 - BWI76_RS19295 0.43 -0.4 4,019,841 + BWI76_RS19295 0.47 +2.1 4,019,858 + BWI76_RS19295 0.49 +0.2 4,019,858 + BWI76_RS19295 0.49 -0.3 4,019,864 + BWI76_RS19295 0.50 +1.1 4,019,866 - BWI76_RS19295 0.50 -0.5 4,019,866 - BWI76_RS19295 0.50 -0.3 4,019,866 - BWI76_RS19295 0.50 +0.2 4,019,866 - -1.3 4,019,867 - BWI76_RS19295 0.50 -0.5 4,019,872 - BWI76_RS19295 0.51 -1.0 4,019,872 - BWI76_RS19295 0.51 +0.3 4,019,899 - BWI76_RS19295 0.54 +0.8 4,019,950 - BWI76_RS19295 0.61 -0.1 4,019,960 + BWI76_RS19295 0.62 +2.2 4,019,962 - BWI76_RS19295 0.62 +0.8 4,019,962 - BWI76_RS19295 0.62 +0.5 4,020,022 - BWI76_RS19295 0.70 +0.9 4,020,045 - BWI76_RS19295 0.72 +0.2 4,020,068 + +3.5 4,020,071 - BWI76_RS19295 0.76 +0.8 4,020,074 - BWI76_RS19295 0.76 +0.4 4,020,076 - BWI76_RS19295 0.76 -0.3 4,020,076 - BWI76_RS19295 0.76 +1.5 4,020,076 - BWI76_RS19295 0.76 -0.1 4,020,076 - BWI76_RS19295 0.76 +1.0 4,020,076 - -1.9 4,020,076 - BWI76_RS19295 0.76 -0.4 4,020,076 - BWI76_RS19295 0.76 +0.3 4,020,076 - BWI76_RS19295 0.76 +1.0 4,020,076 - BWI76_RS19295 0.76 -2.6 4,020,076 - BWI76_RS19295 0.76 -0.4 4,020,080 + BWI76_RS19295 0.77 +0.8 4,020,081 - BWI76_RS19295 0.77 +0.6 4,020,081 - BWI76_RS19295 0.77 -0.8 4,020,081 - BWI76_RS19295 0.77 +0.4 4,020,088 - BWI76_RS19295 0.78 +0.4 4,020,088 - BWI76_RS19295 0.78 -0.9 4,020,093 - BWI76_RS19295 0.78 +0.0 4,020,114 + BWI76_RS19295 0.81 +0.5 4,020,137 - BWI76_RS19295 0.84 -0.2 4,020,152 + BWI76_RS19295 0.86 -0.8 4,020,212 + -1.2 4,020,236 + -0.3 4,020,296 - +0.1 4,020,382 + +0.0 4,020,382 + +1.5 4,020,388 - +1.4 4,020,390 - -0.9 4,020,590 - +0.2 4,020,658 + +0.4 4,020,658 + +1.6 4,020,662 - -0.1 4,020,662 - -0.3 4,020,675 + -0.3 4,020,688 - +0.0 4,020,700 - +0.4 4,020,700 - +0.5 4,020,731 + -3.0 4,020,731 + +0.7 4,020,739 - -0.1 4,020,748 + -0.2 4,020,762 + BWI76_RS19300 0.10 -0.4 4,020,770 + BWI76_RS19300 0.11 +0.4 4,020,770 + BWI76_RS19300 0.11 +1.2 4,020,770 + BWI76_RS19300 0.11 +0.4 4,020,778 - BWI76_RS19300 0.12 +0.1 4,020,873 + BWI76_RS19300 0.25 +1.7 4,021,002 - BWI76_RS19300 0.41 +0.1 4,021,052 - BWI76_RS19300 0.48 +0.0 4,021,166 - BWI76_RS19300 0.63 +0.3 4,021,275 + BWI76_RS19300 0.77 +2.0 4,021,917 + BWI76_RS19305 0.52 -0.3 4,021,948 + BWI76_RS19305 0.56 +0.8 4,022,054 + BWI76_RS19305 0.68 -0.2 4,022,157 + BWI76_RS19305 0.80 +0.9 4,022,241 - BWI76_RS19305 0.90 -0.8 4,022,298 + +0.4
Or see this region's nucleotide sequence