Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19300

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19295 and BWI76_RS19300 are separated by 415 nucleotidesBWI76_RS19300 and BWI76_RS19305 are separated by 10 nucleotidesBWI76_RS19305 and BWI76_RS19310 overlap by 29 nucleotides BWI76_RS19295: BWI76_RS19295 - transcriptional regulator CadC, at 4,019,460 to 4,020,266 _RS19295 BWI76_RS19300: BWI76_RS19300 - ABC transporter ATP-binding protein, at 4,020,682 to 4,021,455 _RS19300 BWI76_RS19305: BWI76_RS19305 - ABC transporter ATP-binding protein, at 4,021,466 to 4,022,329 _RS19305 BWI76_RS19310: BWI76_RS19310 - ABC transporter permease, at 4,022,301 to 4,023,206 _RS19310 Position (kb) 4020 4021 4022Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4019.711 kb on + strand, within BWI76_RS19295at 4019.719 kb on - strand, within BWI76_RS19295at 4019.768 kb on + strandat 4019.768 kb on + strand, within BWI76_RS19295at 4019.768 kb on + strand, within BWI76_RS19295at 4019.775 kb on + strand, within BWI76_RS19295at 4019.775 kb on + strand, within BWI76_RS19295at 4019.775 kb on + strandat 4019.775 kb on + strand, within BWI76_RS19295at 4019.775 kb on + strand, within BWI76_RS19295at 4019.775 kb on + strand, within BWI76_RS19295at 4019.781 kb on - strand, within BWI76_RS19295at 4019.783 kb on - strand, within BWI76_RS19295at 4019.783 kb on - strand, within BWI76_RS19295at 4019.799 kb on - strand, within BWI76_RS19295at 4019.801 kb on + strand, within BWI76_RS19295at 4019.801 kb on + strand, within BWI76_RS19295at 4019.803 kb on + strand, within BWI76_RS19295at 4019.809 kb on - strand, within BWI76_RS19295at 4019.809 kb on - strand, within BWI76_RS19295at 4019.809 kb on - strand, within BWI76_RS19295at 4019.809 kb on - strand, within BWI76_RS19295at 4019.809 kb on - strand, within BWI76_RS19295at 4019.841 kb on + strand, within BWI76_RS19295at 4019.858 kb on + strand, within BWI76_RS19295at 4019.858 kb on + strand, within BWI76_RS19295at 4019.864 kb on + strand, within BWI76_RS19295at 4019.866 kb on - strand, within BWI76_RS19295at 4019.866 kb on - strand, within BWI76_RS19295at 4019.866 kb on - strand, within BWI76_RS19295at 4019.866 kb on - strandat 4019.867 kb on - strand, within BWI76_RS19295at 4019.872 kb on - strand, within BWI76_RS19295at 4019.872 kb on - strand, within BWI76_RS19295at 4019.899 kb on - strand, within BWI76_RS19295at 4019.950 kb on - strand, within BWI76_RS19295at 4019.960 kb on + strand, within BWI76_RS19295at 4019.962 kb on - strand, within BWI76_RS19295at 4019.962 kb on - strand, within BWI76_RS19295at 4020.022 kb on - strand, within BWI76_RS19295at 4020.045 kb on - strand, within BWI76_RS19295at 4020.068 kb on + strandat 4020.071 kb on - strand, within BWI76_RS19295at 4020.074 kb on - strand, within BWI76_RS19295at 4020.076 kb on - strand, within BWI76_RS19295at 4020.076 kb on - strand, within BWI76_RS19295at 4020.076 kb on - strand, within BWI76_RS19295at 4020.076 kb on - strand, within BWI76_RS19295at 4020.076 kb on - strandat 4020.076 kb on - strand, within BWI76_RS19295at 4020.076 kb on - strand, within BWI76_RS19295at 4020.076 kb on - strand, within BWI76_RS19295at 4020.076 kb on - strand, within BWI76_RS19295at 4020.076 kb on - strand, within BWI76_RS19295at 4020.080 kb on + strand, within BWI76_RS19295at 4020.081 kb on - strand, within BWI76_RS19295at 4020.081 kb on - strand, within BWI76_RS19295at 4020.081 kb on - strand, within BWI76_RS19295at 4020.088 kb on - strand, within BWI76_RS19295at 4020.088 kb on - strand, within BWI76_RS19295at 4020.093 kb on - strand, within BWI76_RS19295at 4020.114 kb on + strand, within BWI76_RS19295at 4020.137 kb on - strand, within BWI76_RS19295at 4020.152 kb on + strand, within BWI76_RS19295at 4020.212 kb on + strandat 4020.236 kb on + strandat 4020.296 kb on - strandat 4020.382 kb on + strandat 4020.382 kb on + strandat 4020.388 kb on - strandat 4020.390 kb on - strandat 4020.590 kb on - strandat 4020.658 kb on + strandat 4020.658 kb on + strandat 4020.662 kb on - strandat 4020.662 kb on - strandat 4020.675 kb on + strandat 4020.688 kb on - strandat 4020.700 kb on - strandat 4020.700 kb on - strandat 4020.731 kb on + strandat 4020.731 kb on + strandat 4020.739 kb on - strandat 4020.748 kb on + strandat 4020.762 kb on + strand, within BWI76_RS19300at 4020.770 kb on + strand, within BWI76_RS19300at 4020.770 kb on + strand, within BWI76_RS19300at 4020.770 kb on + strand, within BWI76_RS19300at 4020.778 kb on - strand, within BWI76_RS19300at 4020.873 kb on + strand, within BWI76_RS19300at 4021.002 kb on - strand, within BWI76_RS19300at 4021.052 kb on - strand, within BWI76_RS19300at 4021.166 kb on - strand, within BWI76_RS19300at 4021.275 kb on + strand, within BWI76_RS19300at 4021.917 kb on + strand, within BWI76_RS19305at 4021.948 kb on + strand, within BWI76_RS19305at 4022.054 kb on + strand, within BWI76_RS19305at 4022.157 kb on + strand, within BWI76_RS19305at 4022.241 kb on - strand, within BWI76_RS19305at 4022.298 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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4,019,711 + BWI76_RS19295 0.31 -0.4
4,019,719 - BWI76_RS19295 0.32 +0.5
4,019,768 + -1.3
4,019,768 + BWI76_RS19295 0.38 +1.7
4,019,768 + BWI76_RS19295 0.38 -0.5
4,019,775 + BWI76_RS19295 0.39 +1.5
4,019,775 + BWI76_RS19295 0.39 -0.3
4,019,775 + +1.3
4,019,775 + BWI76_RS19295 0.39 -0.3
4,019,775 + BWI76_RS19295 0.39 -2.2
4,019,775 + BWI76_RS19295 0.39 +0.3
4,019,781 - BWI76_RS19295 0.40 +0.7
4,019,783 - BWI76_RS19295 0.40 -0.4
4,019,783 - BWI76_RS19295 0.40 -0.1
4,019,799 - BWI76_RS19295 0.42 -0.3
4,019,801 + BWI76_RS19295 0.42 +0.7
4,019,801 + BWI76_RS19295 0.42 +0.8
4,019,803 + BWI76_RS19295 0.43 +2.1
4,019,809 - BWI76_RS19295 0.43 +0.9
4,019,809 - BWI76_RS19295 0.43 +0.2
4,019,809 - BWI76_RS19295 0.43 +0.3
4,019,809 - BWI76_RS19295 0.43 +0.1
4,019,809 - BWI76_RS19295 0.43 -0.4
4,019,841 + BWI76_RS19295 0.47 +2.1
4,019,858 + BWI76_RS19295 0.49 +0.2
4,019,858 + BWI76_RS19295 0.49 -0.3
4,019,864 + BWI76_RS19295 0.50 +1.1
4,019,866 - BWI76_RS19295 0.50 -0.5
4,019,866 - BWI76_RS19295 0.50 -0.3
4,019,866 - BWI76_RS19295 0.50 +0.2
4,019,866 - -1.3
4,019,867 - BWI76_RS19295 0.50 -0.5
4,019,872 - BWI76_RS19295 0.51 -1.0
4,019,872 - BWI76_RS19295 0.51 +0.3
4,019,899 - BWI76_RS19295 0.54 +0.8
4,019,950 - BWI76_RS19295 0.61 -0.1
4,019,960 + BWI76_RS19295 0.62 +2.2
4,019,962 - BWI76_RS19295 0.62 +0.8
4,019,962 - BWI76_RS19295 0.62 +0.5
4,020,022 - BWI76_RS19295 0.70 +0.9
4,020,045 - BWI76_RS19295 0.72 +0.2
4,020,068 + +3.5
4,020,071 - BWI76_RS19295 0.76 +0.8
4,020,074 - BWI76_RS19295 0.76 +0.4
4,020,076 - BWI76_RS19295 0.76 -0.3
4,020,076 - BWI76_RS19295 0.76 +1.5
4,020,076 - BWI76_RS19295 0.76 -0.1
4,020,076 - BWI76_RS19295 0.76 +1.0
4,020,076 - -1.9
4,020,076 - BWI76_RS19295 0.76 -0.4
4,020,076 - BWI76_RS19295 0.76 +0.3
4,020,076 - BWI76_RS19295 0.76 +1.0
4,020,076 - BWI76_RS19295 0.76 -2.6
4,020,076 - BWI76_RS19295 0.76 -0.4
4,020,080 + BWI76_RS19295 0.77 +0.8
4,020,081 - BWI76_RS19295 0.77 +0.6
4,020,081 - BWI76_RS19295 0.77 -0.8
4,020,081 - BWI76_RS19295 0.77 +0.4
4,020,088 - BWI76_RS19295 0.78 +0.4
4,020,088 - BWI76_RS19295 0.78 -0.9
4,020,093 - BWI76_RS19295 0.78 +0.0
4,020,114 + BWI76_RS19295 0.81 +0.5
4,020,137 - BWI76_RS19295 0.84 -0.2
4,020,152 + BWI76_RS19295 0.86 -0.8
4,020,212 + -1.2
4,020,236 + -0.3
4,020,296 - +0.1
4,020,382 + +0.0
4,020,382 + +1.5
4,020,388 - +1.4
4,020,390 - -0.9
4,020,590 - +0.2
4,020,658 + +0.4
4,020,658 + +1.6
4,020,662 - -0.1
4,020,662 - -0.3
4,020,675 + -0.3
4,020,688 - +0.0
4,020,700 - +0.4
4,020,700 - +0.5
4,020,731 + -3.0
4,020,731 + +0.7
4,020,739 - -0.1
4,020,748 + -0.2
4,020,762 + BWI76_RS19300 0.10 -0.4
4,020,770 + BWI76_RS19300 0.11 +0.4
4,020,770 + BWI76_RS19300 0.11 +1.2
4,020,770 + BWI76_RS19300 0.11 +0.4
4,020,778 - BWI76_RS19300 0.12 +0.1
4,020,873 + BWI76_RS19300 0.25 +1.7
4,021,002 - BWI76_RS19300 0.41 +0.1
4,021,052 - BWI76_RS19300 0.48 +0.0
4,021,166 - BWI76_RS19300 0.63 +0.3
4,021,275 + BWI76_RS19300 0.77 +2.0
4,021,917 + BWI76_RS19305 0.52 -0.3
4,021,948 + BWI76_RS19305 0.56 +0.8
4,022,054 + BWI76_RS19305 0.68 -0.2
4,022,157 + BWI76_RS19305 0.80 +0.9
4,022,241 - BWI76_RS19305 0.90 -0.8
4,022,298 + +0.4

Or see this region's nucleotide sequence