Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17045

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17040 and BWI76_RS17045 are separated by 336 nucleotidesBWI76_RS17045 and BWI76_RS17050 overlap by 4 nucleotides BWI76_RS17040: BWI76_RS17040 - GlsB/YeaQ/YmgE family stress response membrane protein, at 3,534,286 to 3,534,534 _RS17040 BWI76_RS17045: BWI76_RS17045 - hypothetical protein, at 3,534,871 to 3,535,281 _RS17045 BWI76_RS17050: BWI76_RS17050 - FAD-binding oxidoreductase, at 3,535,278 to 3,538,334 _RS17050 Position (kb) 3534 3535 3536Strain fitness (log2 ratio) -2 -1 0 1 2at 3533.885 kb on + strandat 3533.898 kb on - strandat 3533.903 kb on + strandat 3533.971 kb on - strandat 3533.972 kb on - strandat 3533.974 kb on + strandat 3533.974 kb on + strandat 3533.974 kb on + strandat 3533.979 kb on + strandat 3533.982 kb on - strandat 3533.982 kb on - strandat 3533.987 kb on - strandat 3533.987 kb on - strandat 3533.987 kb on - strandat 3533.987 kb on - strandat 3533.999 kb on + strandat 3534.025 kb on + strandat 3534.026 kb on - strandat 3534.026 kb on - strandat 3534.054 kb on + strandat 3534.054 kb on + strandat 3534.056 kb on + strandat 3534.064 kb on - strandat 3534.128 kb on + strandat 3534.128 kb on + strandat 3534.128 kb on + strandat 3534.136 kb on - strandat 3534.136 kb on - strandat 3534.152 kb on - strandat 3534.176 kb on + strandat 3534.183 kb on - strandat 3534.204 kb on + strandat 3534.212 kb on - strandat 3534.256 kb on + strandat 3534.264 kb on - strandat 3534.264 kb on - strandat 3534.322 kb on - strand, within BWI76_RS17040at 3534.334 kb on - strand, within BWI76_RS17040at 3534.342 kb on + strand, within BWI76_RS17040at 3534.392 kb on + strand, within BWI76_RS17040at 3534.392 kb on + strand, within BWI76_RS17040at 3534.400 kb on - strand, within BWI76_RS17040at 3534.400 kb on - strand, within BWI76_RS17040at 3534.400 kb on - strand, within BWI76_RS17040at 3534.414 kb on - strand, within BWI76_RS17040at 3534.414 kb on - strand, within BWI76_RS17040at 3534.424 kb on - strand, within BWI76_RS17040at 3534.471 kb on + strand, within BWI76_RS17040at 3534.654 kb on + strandat 3534.654 kb on + strandat 3534.654 kb on + strandat 3534.654 kb on + strandat 3534.662 kb on - strandat 3534.708 kb on - strandat 3534.788 kb on - strandat 3534.823 kb on + strandat 3534.823 kb on + strandat 3534.867 kb on - strandat 3534.877 kb on - strandat 3534.877 kb on - strandat 3535.176 kb on - strand, within BWI76_RS17045at 3535.241 kb on + strandat 3535.574 kb on + strandat 3535.614 kb on + strand, within BWI76_RS17050at 3536.149 kb on - strand, within BWI76_RS17050

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,533,885 + -0.4
3,533,898 - +0.2
3,533,903 + +0.7
3,533,971 - -1.5
3,533,972 - -0.2
3,533,974 + +0.0
3,533,974 + +0.2
3,533,974 + -1.9
3,533,979 + +0.3
3,533,982 - +0.4
3,533,982 - -0.7
3,533,987 - +0.3
3,533,987 - +0.6
3,533,987 - +0.9
3,533,987 - +0.7
3,533,999 + +0.2
3,534,025 + +0.1
3,534,026 - +1.0
3,534,026 - -2.0
3,534,054 + -0.7
3,534,054 + +0.3
3,534,056 + +2.0
3,534,064 - +0.6
3,534,128 + -0.4
3,534,128 + +0.8
3,534,128 + -0.1
3,534,136 - +1.2
3,534,136 - -0.8
3,534,152 - -0.0
3,534,176 + +0.6
3,534,183 - -0.6
3,534,204 + -0.4
3,534,212 - +0.2
3,534,256 + -0.4
3,534,264 - +0.3
3,534,264 - -0.3
3,534,322 - BWI76_RS17040 0.14 +0.6
3,534,334 - BWI76_RS17040 0.19 +0.3
3,534,342 + BWI76_RS17040 0.22 +1.1
3,534,392 + BWI76_RS17040 0.43 -0.4
3,534,392 + BWI76_RS17040 0.43 +0.2
3,534,400 - BWI76_RS17040 0.46 +0.5
3,534,400 - BWI76_RS17040 0.46 -0.1
3,534,400 - BWI76_RS17040 0.46 -0.2
3,534,414 - BWI76_RS17040 0.51 +0.7
3,534,414 - BWI76_RS17040 0.51 +0.1
3,534,424 - BWI76_RS17040 0.55 +0.6
3,534,471 + BWI76_RS17040 0.74 -0.6
3,534,654 + +0.4
3,534,654 + -0.3
3,534,654 + +0.3
3,534,654 + -0.3
3,534,662 - -0.4
3,534,708 - +0.3
3,534,788 - +0.6
3,534,823 + +1.3
3,534,823 + -0.5
3,534,867 - +0.0
3,534,877 - +0.5
3,534,877 - -0.1
3,535,176 - BWI76_RS17045 0.74 +0.4
3,535,241 + +0.2
3,535,574 + -0.1
3,535,614 + BWI76_RS17050 0.11 -0.3
3,536,149 - BWI76_RS17050 0.28 -0.2

Or see this region's nucleotide sequence