Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3351

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfate (60/30-30 mM) with Casaminos 0.05%
3,521,403	-		DVU3349	0.75	+0.8
3,521,691	-				-0.5
3,521,716	-	oorD	DVU3350	0.18	-0.1
3,521,745	+	oorD	DVU3350	0.31	-2.2
3,521,851	+	oorD	DVU3350	0.76	-2.2
3,521,854	+	oorD	DVU3350	0.77	+1.2
3,521,854	+	oorD	DVU3350	0.77	-0.4
3,521,859	-	oorD	DVU3350	0.79	-1.2
3,522,051	-				-0.0
3,522,051	-				-0.3
3,522,120	-				-0.3
3,522,122	-				+0.2
3,522,122	-				-0.6
3,522,137	+				+0.4
3,522,137	+				+0.3
3,522,196	+				-0.2
3,522,209	+				-0.6
3,522,209	+				-0.1
3,522,217	-				-0.3
3,522,246	+				-0.8
3,522,254	-				-0.2
3,522,266	+				-0.2
3,522,319	-				-0.8
3,522,366	+				-0.9
3,522,367	+				-0.4
3,522,375	-				-0.4
3,522,400	-	queA	DVU3351	0.12	-0.7
3,522,401	+	queA	DVU3351	0.12	-0.5
3,522,439	-	queA	DVU3351	0.15	-0.3
3,522,480	+	queA	DVU3351	0.19	-1.6
3,522,488	-	queA	DVU3351	0.20	-0.0
3,522,488	-	queA	DVU3351	0.20	-0.9
3,522,490	-	queA	DVU3351	0.20	-0.9
3,522,490	-	queA	DVU3351	0.20	-1.0
3,522,492	+	queA	DVU3351	0.20	+0.2
3,522,513	+	queA	DVU3351	0.22	-1.3
3,522,530	+	queA	DVU3351	0.23	-1.0
3,522,558	+	queA	DVU3351	0.26	-1.1
3,522,558	+	queA	DVU3351	0.26	-1.1
3,522,565	+	queA	DVU3351	0.26	-1.7
3,522,565	+	queA	DVU3351	0.26	-0.8
3,522,565	+	queA	DVU3351	0.26	-1.0
3,522,592	-	queA	DVU3351	0.29	-1.0
3,522,592	-	queA	DVU3351	0.29	-0.6
3,522,621	+	queA	DVU3351	0.31	-0.8
3,522,653	+	queA	DVU3351	0.34	-0.8
3,522,671	-	queA	DVU3351	0.36	+0.2
3,522,680	+	queA	DVU3351	0.37	-1.3
3,522,680	+	queA	DVU3351	0.37	-1.1
3,522,688	-	queA	DVU3351	0.37	-0.3
3,522,692	+	queA	DVU3351	0.38	-1.2
3,522,694	-	queA	DVU3351	0.38	-0.3
3,522,786	+	queA	DVU3351	0.46	-1.5
3,522,813	-	queA	DVU3351	0.49	-1.4
3,522,822	+	queA	DVU3351	0.49	-0.5
3,522,832	-	queA	DVU3351	0.50	-1.7
3,522,887	-	queA	DVU3351	0.55	-1.2
3,522,912	-	queA	DVU3351	0.58	-0.8
3,522,917	+	queA	DVU3351	0.58	-0.2
3,522,925	-	queA	DVU3351	0.59	-0.5
3,522,935	-	queA	DVU3351	0.60	+0.1
3,522,945	-	queA	DVU3351	0.60	-0.9
3,522,958	+	queA	DVU3351	0.62	-1.3
3,522,959	+	queA	DVU3351	0.62	-1.1
3,522,971	+	queA	DVU3351	0.63	-0.9
3,523,004	+	queA	DVU3351	0.66	-1.2
3,523,012	-	queA	DVU3351	0.66	-0.5
3,523,022	+	queA	DVU3351	0.67	-1.0
3,523,032	-	queA	DVU3351	0.68	-0.7
3,523,032	-	queA	DVU3351	0.68	-1.1
3,523,052	+	queA	DVU3351	0.70	-1.0
3,523,057	+	queA	DVU3351	0.71	+0.3
3,523,067	+	queA	DVU3351	0.71	-1.8
3,523,126	+	queA	DVU3351	0.77	-1.9
3,523,127	-	queA	DVU3351	0.77	-0.9
3,523,144	-	queA	DVU3351	0.78	-1.1
3,523,179	-	queA	DVU3351	0.81	-0.5
3,523,260	-	queA	DVU3351	0.89	-1.6
3,523,305	+				-0.3
3,523,338	-				-1.0
3,523,339	-				-1.3
3,523,346	-				-1.1
3,523,374	-				-0.5
3,523,428	-				+0.1
3,523,435	+				-0.8
3,523,444	+				-0.2
3,523,444	+				-0.9
3,523,444	+				+0.0
3,523,456	+				+0.3
3,523,488	+				-0.1
3,523,496	-				+0.2
3,523,535	+				-0.3
3,523,574	+		DVU3352	0.13	+0.0
3,523,635	+		DVU3352	0.24	-0.3
3,523,675	+		DVU3352	0.31	-0.4
3,523,827	+		DVU3352	0.58	+0.9
3,523,827	+		DVU3352	0.58	-0.2
3,523,901	+		DVU3352	0.71	-0.3
3,523,901	+		DVU3352	0.71	+0.2
3,523,959	+		DVU3352	0.81	-0.1
3,524,064	+				+0.2