Strain Fitness in Pantoea sp. MT58 around IAI47_12715

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,675,756	-				+0.8
2,675,756	-				+0.5
2,675,758	-				+2.6
2,675,758	-				+0.7
2,675,786	-				-0.2
2,675,797	-				+2.1
2,675,803	+				+0.0
2,675,803	+				+1.2
2,675,877	+				+0.9
2,675,919	-				+0.6
2,675,929	+				+0.8
2,675,930	-				-1.4
2,675,950	+		IAI47_12715	0.11	-1.7
2,675,950	+		IAI47_12715	0.11	+0.3
2,675,951	-		IAI47_12715	0.11	+2.6
2,675,968	+		IAI47_12715	0.13	+0.4
2,675,982	+		IAI47_12715	0.14	+1.9
2,675,982	+		IAI47_12715	0.14	+0.3
2,675,982	+		IAI47_12715	0.14	+0.3
2,675,982	+		IAI47_12715	0.14	+0.9
2,675,983	-		IAI47_12715	0.14	-0.3
2,675,983	-		IAI47_12715	0.14	+2.1
2,675,983	-		IAI47_12715	0.14	-0.3
2,676,006	+		IAI47_12715	0.17	-0.9
2,676,006	+		IAI47_12715	0.17	+0.4
2,676,006	+		IAI47_12715	0.17	+0.0
2,676,007	-		IAI47_12715	0.17	+0.5
2,676,014	+		IAI47_12715	0.17	-0.2
2,676,014	+		IAI47_12715	0.17	-0.1
2,676,015	-		IAI47_12715	0.18	-2.4
2,676,015	-		IAI47_12715	0.18	+0.1
2,676,018	+		IAI47_12715	0.18	+0.3
2,676,019	-		IAI47_12715	0.18	-3.1
2,676,019	-		IAI47_12715	0.18	+3.5
2,676,019	-		IAI47_12715	0.18	+0.5
2,676,019	-		IAI47_12715	0.18	+0.3
2,676,044	+		IAI47_12715	0.20	-1.8
2,676,044	+		IAI47_12715	0.20	-1.5
2,676,045	-		IAI47_12715	0.21	+0.2
2,676,048	+		IAI47_12715	0.21	+1.4
2,676,108	+		IAI47_12715	0.27	-0.2
2,676,108	+		IAI47_12715	0.27	-0.7
2,676,109	-		IAI47_12715	0.27	+0.6
2,676,109	-		IAI47_12715	0.27	-0.2
2,676,118	+		IAI47_12715	0.28	+2.3
2,676,118	+		IAI47_12715	0.28	-0.4
2,676,118	+		IAI47_12715	0.28	+1.3
2,676,129	+		IAI47_12715	0.29	-0.9
2,676,129	+		IAI47_12715	0.29	+0.3
2,676,129	+		IAI47_12715	0.29	+0.9
2,676,129	+		IAI47_12715	0.29	-2.0
2,676,130	-		IAI47_12715	0.29	+0.3
2,676,157	+		IAI47_12715	0.32	+1.4
2,676,158	-		IAI47_12715	0.32	+0.0
2,676,160	+		IAI47_12715	0.32	-1.6
2,676,160	+		IAI47_12715	0.32	+1.0
2,676,161	-		IAI47_12715	0.32	-3.6
2,676,187	+		IAI47_12715	0.35	+0.7
2,676,187	+		IAI47_12715	0.35	-0.9
2,676,187	+		IAI47_12715	0.35	-1.8
2,676,188	-		IAI47_12715	0.35	+3.8
2,676,188	-		IAI47_12715	0.35	+0.2
2,676,196	+		IAI47_12715	0.36	+0.2
2,676,196	+		IAI47_12715	0.36	-0.4
2,676,197	-		IAI47_12715	0.36	-0.8
2,676,198	+		IAI47_12715	0.36	+1.1
2,676,198	+		IAI47_12715	0.36	-0.1
2,676,198	+		IAI47_12715	0.36	-0.5
2,676,198	+		IAI47_12715	0.36	+1.1
2,676,198	+		IAI47_12715	0.36	-1.7
2,676,199	-		IAI47_12715	0.36	+2.4
2,676,199	-		IAI47_12715	0.36	+0.2
2,676,199	-		IAI47_12715	0.36	+2.2
2,676,201	+		IAI47_12715	0.36	+2.9
2,676,201	+		IAI47_12715	0.36	+1.0
2,676,201	+		IAI47_12715	0.36	+0.9
2,676,202	-		IAI47_12715	0.37	+0.8
2,676,238	+		IAI47_12715	0.40	+2.4
2,676,281	-		IAI47_12715	0.45	+1.9
2,676,281	-		IAI47_12715	0.45	+0.4
2,676,295	+		IAI47_12715	0.46	+1.4
2,676,296	-		IAI47_12715	0.46	+1.5
2,676,296	-		IAI47_12715	0.46	+1.6
2,676,327	+		IAI47_12715	0.49	-1.2
2,676,327	+		IAI47_12715	0.49	+1.1
2,676,327	+		IAI47_12715	0.49	-0.2
2,676,327	+		IAI47_12715	0.49	+0.4
2,676,327	+		IAI47_12715	0.49	-0.1
2,676,327	+		IAI47_12715	0.49	+1.5
2,676,328	-		IAI47_12715	0.49	-1.6
2,676,328	-		IAI47_12715	0.49	-0.9
2,676,328	-		IAI47_12715	0.49	-1.1
2,676,328	-		IAI47_12715	0.49	-1.3
2,676,328	-		IAI47_12715	0.49	+0.7
2,676,328	-		IAI47_12715	0.49	-0.3
2,676,328	-		IAI47_12715	0.49	+0.9
2,676,328	-		IAI47_12715	0.49	+0.5
2,676,328	-		IAI47_12715	0.49	+0.4
2,676,346	+		IAI47_12715	0.51	-0.5
2,676,346	+		IAI47_12715	0.51	-1.9
2,676,346	+		IAI47_12715	0.51	+0.3
2,676,346	+		IAI47_12715	0.51	+0.4
2,676,347	-		IAI47_12715	0.51	+0.4
2,676,347	-		IAI47_12715	0.51	+0.1
2,676,347	-		IAI47_12715	0.51	+0.6
2,676,347	-		IAI47_12715	0.51	+0.7
2,676,348	+		IAI47_12715	0.51	-0.4
2,676,348	+		IAI47_12715	0.51	+0.2
2,676,348	+		IAI47_12715	0.51	+1.1
2,676,349	-		IAI47_12715	0.52	-0.0
2,676,359	-		IAI47_12715	0.53	-1.2
2,676,359	-		IAI47_12715	0.53	+0.5
2,676,455	+		IAI47_12715	0.62	-1.1
2,676,456	-		IAI47_12715	0.62	-0.4
2,676,456	-		IAI47_12715	0.62	+1.9
2,676,466	+		IAI47_12715	0.64	+2.3
2,676,636	-		IAI47_12715	0.81	-0.7
2,676,661	-		IAI47_12715	0.83	-1.6
2,676,675	-		IAI47_12715	0.85	-0.8
2,676,675	-		IAI47_12715	0.85	-0.6
2,676,716	+		IAI47_12715	0.89	-1.7
2,676,743	+				-0.3
2,676,743	+				+0.9
2,676,744	-				-0.0
2,676,744	-				-1.9
2,676,747	-				+1.4
2,676,747	-				+0.6
2,676,769	+				+0.6
2,676,769	+				-1.2
2,676,769	+				+0.5
2,676,771	+				+2.6
2,676,796	+				+0.9
2,676,800	+				+2.9
2,676,800	+				-0.9
2,676,800	+				+0.2
2,676,806	+				+1.0
2,676,806	+				+0.6
2,676,807	-				-2.0
2,676,807	-				+1.1
2,676,807	-				-2.4
2,676,807	-				-0.3
2,676,809	+				-1.1
2,676,809	+				+0.6
2,676,809	+				+0.6
2,676,809	+				+1.9
2,676,809	+				-0.1
2,676,810	-				-0.7
2,676,810	-				-1.6
2,676,810	-				-1.2
2,676,810	-				-0.3
2,676,810	-				+1.7
2,676,810	-				+0.1
2,676,823	+				+2.3
2,676,824	-				-1.4
2,676,856	-				+1.7
2,676,909	+				-0.5
2,676,909	+				-0.2
2,676,917	+				+0.3
2,676,918	-				-0.6
2,676,920	+				-0.6
2,676,921	-				-2.0
2,676,923	+				+2.5
2,676,923	+				-0.1
2,676,924	-				+6.1
2,676,924	-				-0.9
2,676,929	-				-0.4
2,676,948	+				+0.3
2,676,953	+				+0.4
2,676,990	+				+0.4
2,676,995	+				+0.4
2,677,020	+				+2.1
2,677,035	+				+1.9
2,677,035	+				-1.9
2,677,035	+				-0.7
2,677,035	+				+0.5
2,677,035	+				+0.4
2,677,035	+				+1.9
2,677,036	-				-0.8
2,677,036	-				-0.9
2,677,036	-				+2.0
2,677,036	-				+2.7
2,677,037	+				+0.1
2,677,038	-				+1.6
2,677,038	-				+0.0
2,677,053	+				+1.1
2,677,079	+				-0.9
2,677,098	+				-0.2
2,677,098	+				+0.7
2,677,099	-				+1.3
2,677,099	-				+0.3
2,677,099	-				+0.6
2,677,119	-				-0.1
2,677,119	-				-0.6
2,677,119	-				+0.2
2,677,132	+				-1.2
2,677,132	+				+2.7
2,677,132	+				-0.3
2,677,133	-				+1.3
2,677,133	-				-0.8
2,677,133	-				+0.3
2,677,133	-				-0.4
2,677,133	-				-0.6
2,677,136	-				+0.7
2,677,143	-				-0.5
2,677,143	-				+1.5
2,677,154	+				+0.3
2,677,154	+				+3.5
2,677,155	-				+2.3
2,677,155	-				-2.2
2,677,155	-				-0.1
2,677,155	-				+1.6
2,677,189	-				+0.5
2,677,189	-				-1.1
2,677,194	+				-1.9
2,677,194	+				+0.9
2,677,195	-				+2.5
2,677,252	+				+0.1
2,677,252	+				+3.0
2,677,252	+				+1.5
2,677,253	-				+0.9
2,677,253	-				+0.9
2,677,253	-				+2.1
2,677,253	-				-2.2
2,677,253	-				-1.3
2,677,253	-				+0.8
2,677,279	+				+1.4
2,677,279	+				+1.8
2,677,279	+				+0.7
2,677,279	+				+0.8
2,677,279	+				-0.0
2,677,280	-				+1.3
2,677,280	-				+1.3
2,677,301	+				-1.4
2,677,301	+				-0.4
2,677,302	-				-0.3
2,677,359	-				-1.6
2,677,396	+				-0.7
2,677,396	+				-1.2
2,677,397	-				+0.3
2,677,402	-				-2.0
2,677,402	-				-1.3
2,677,419	+				+0.7
2,677,419	+				-1.4
2,677,420	-				-0.2
2,677,420	-				+1.1
2,677,420	-				-0.4
2,677,448	+				+0.2
2,677,448	+				-0.1
2,677,448	+				+0.1
2,677,448	+				+0.5
2,677,449	-				+1.0
2,677,449	-				-1.0
2,677,467	+				-0.4
2,677,467	+				-1.1
2,677,467	+				+0.7
2,677,468	-				+1.3
2,677,468	-				+1.3
2,677,468	-				-2.8
2,677,468	-				+0.3
2,677,468	-				+0.9
2,677,468	-				+1.2
2,677,488	+				+0.3
2,677,488	+				+1.9
2,677,488	+				-0.9
2,677,488	+				-2.3
2,677,488	+				+1.3
2,677,489	-				+1.0
2,677,489	-				+0.9
2,677,489	-				+0.7
2,677,489	-				-0.1
2,677,489	-				+0.9
2,677,489	-				+0.9
2,677,501	+				+1.5
2,677,501	+				-1.0
2,677,502	-				-0.4
2,677,502	-				+0.5
2,677,513	+				+0.9
2,677,513	+				+1.1
2,677,514	-				-1.3
2,677,548	+				-1.6
2,677,582	-				+1.1
2,677,584	+				+0.4
2,677,584	+				-0.1
2,677,584	+				-1.3
2,677,584	+				-1.3
2,677,584	+				+0.5
2,677,584	+				+0.2
2,677,584	+				+1.9
2,677,585	-				-1.4
2,677,585	-				+1.4
2,677,585	-				-1.5
2,677,585	-				-0.7
2,677,628	+				+0.2
2,677,628	+				-1.4
2,677,628	+				+1.6
2,677,686	+		IAI47_12720	0.20	+1.7
2,677,687	-		IAI47_12720	0.21	-0.2
2,677,687	-		IAI47_12720	0.21	-0.4
2,677,801	+		IAI47_12720	0.41	+0.3
2,677,801	+		IAI47_12720	0.41	-1.6
2,677,801	+		IAI47_12720	0.41	-1.9
2,677,801	+		IAI47_12720	0.41	+3.9
2,677,802	-		IAI47_12720	0.41	-2.6
2,677,802	-		IAI47_12720	0.41	-0.3
2,677,802	-		IAI47_12720	0.41	-0.3
2,677,803	+		IAI47_12720	0.42	+1.1
2,677,803	+		IAI47_12720	0.42	-0.2
2,677,804	-		IAI47_12720	0.42	+0.6
2,677,804	-		IAI47_12720	0.42	-0.2