Strain Fitness in Pantoea sp. MT58 around IAI47_05925

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,214,993	+		IAI47_05920	0.23	+0.7
1,214,993	+		IAI47_05920	0.23	+0.1
1,214,994	-		IAI47_05920	0.23	-0.1
1,214,994	-		IAI47_05920	0.23	-0.1
1,215,034	+		IAI47_05920	0.26	+1.5
1,215,034	+		IAI47_05920	0.26	-0.0
1,215,035	-		IAI47_05920	0.27	+0.6
1,215,035	-		IAI47_05920	0.27	-1.4
1,215,035	-		IAI47_05920	0.27	+1.8
1,215,035	-		IAI47_05920	0.27	+1.5
1,215,035	-		IAI47_05920	0.27	-1.3
1,215,035	-		IAI47_05920	0.27	+0.2
1,215,035	-		IAI47_05920	0.27	+2.3
1,215,103	+		IAI47_05920	0.32	-1.9
1,215,103	+		IAI47_05920	0.32	+0.5
1,215,104	-		IAI47_05920	0.32	+0.5
1,215,114	+		IAI47_05920	0.33	-0.2
1,215,114	+		IAI47_05920	0.33	-0.7
1,215,114	+		IAI47_05920	0.33	+2.9
1,215,114	+		IAI47_05920	0.33	-1.7
1,215,114	+		IAI47_05920	0.33	+1.4
1,215,114	+		IAI47_05920	0.33	+1.1
1,215,114	+		IAI47_05920	0.33	-0.2
1,215,114	+		IAI47_05920	0.33	+1.2
1,215,115	-		IAI47_05920	0.33	-1.4
1,215,115	-		IAI47_05920	0.33	-0.1
1,215,115	-		IAI47_05920	0.33	-1.5
1,215,115	-		IAI47_05920	0.33	+0.3
1,215,115	-		IAI47_05920	0.33	-0.1
1,215,126	+		IAI47_05920	0.34	+0.5
1,215,126	+		IAI47_05920	0.34	+0.4
1,215,126	+		IAI47_05920	0.34	+0.4
1,215,127	-		IAI47_05920	0.34	-2.8
1,215,127	-		IAI47_05920	0.34	-1.4
1,215,127	-		IAI47_05920	0.34	-0.5
1,215,167	+		IAI47_05920	0.37	+2.1
1,215,167	+		IAI47_05920	0.37	+0.3
1,215,190	+		IAI47_05920	0.39	-1.5
1,215,190	+		IAI47_05920	0.39	-0.1
1,215,230	+		IAI47_05920	0.42	+0.9
1,215,230	+		IAI47_05920	0.42	+2.6
1,215,230	+		IAI47_05920	0.42	-0.8
1,215,231	-		IAI47_05920	0.42	-0.2
1,215,231	-		IAI47_05920	0.42	+0.1
1,215,231	-		IAI47_05920	0.42	-0.0
1,215,231	-		IAI47_05920	0.42	-0.4
1,215,245	+		IAI47_05920	0.44	-0.3
1,215,246	-		IAI47_05920	0.44	+2.7
1,215,267	-		IAI47_05920	0.45	-0.0
1,215,287	+		IAI47_05920	0.47	+0.9
1,215,376	+		IAI47_05920	0.54	+1.1
1,215,376	+		IAI47_05920	0.54	+1.4
1,215,433	+		IAI47_05920	0.59	-2.0
1,215,434	-		IAI47_05920	0.59	+1.0
1,215,434	-		IAI47_05920	0.59	+0.3
1,215,438	-		IAI47_05920	0.59	+1.0
1,215,438	-		IAI47_05920	0.59	-0.7
1,215,548	+		IAI47_05920	0.68	+0.8
1,215,548	+		IAI47_05920	0.68	+0.1
1,215,549	-		IAI47_05920	0.68	+0.7
1,215,609	+		IAI47_05920	0.73	-1.3
1,215,609	+		IAI47_05920	0.73	-1.7
1,215,609	+		IAI47_05920	0.73	+0.1
1,215,610	-		IAI47_05920	0.73	-0.8
1,215,610	-		IAI47_05920	0.73	-1.8
1,215,610	-		IAI47_05920	0.73	-0.4
1,215,610	-		IAI47_05920	0.73	+1.5
1,215,675	-		IAI47_05920	0.78	-2.7
1,215,675	-		IAI47_05920	0.78	-0.2
1,215,675	-		IAI47_05920	0.78	+0.8
1,215,690	-		IAI47_05920	0.79	-0.5
1,215,690	-		IAI47_05920	0.79	-2.3
1,215,716	+		IAI47_05920	0.82	-0.1
1,215,716	+		IAI47_05920	0.82	+0.2
1,215,716	+		IAI47_05920	0.82	+2.6
1,215,717	-		IAI47_05920	0.82	-0.7
1,215,762	-		IAI47_05920	0.85	-0.2
1,215,876	+				-0.3
1,215,877	-				-0.4
1,215,938	+				-0.2
1,215,938	+				-0.4
1,215,938	+				-1.0
1,215,938	+				-0.7
1,215,939	-				-1.4
1,215,942	+				-1.1
1,215,942	+				+0.5
1,215,943	-				-1.2
1,215,943	-				+1.5
1,215,965	+				-1.1
1,215,965	+				+0.8
1,215,965	+				+1.3
1,215,965	+				+0.2
1,215,965	+				-1.4
1,215,965	+				-0.2
1,215,965	+				+1.2
1,215,966	-				+2.1
1,215,966	-				-0.1
1,215,966	-				-1.4
1,215,966	-				-1.7
1,215,966	-				+1.1
1,215,966	-				+1.1
1,215,966	-				+0.6
1,215,966	-				+2.6
1,215,984	+				-0.3
1,216,001	-				+0.8
1,216,001	-				-0.1
1,216,054	+		IAI47_05925	0.20	+1.0
1,216,055	-		IAI47_05925	0.20	+1.7
1,216,067	+		IAI47_05925	0.22	-1.1
1,216,067	+		IAI47_05925	0.22	+0.4
1,216,082	-		IAI47_05925	0.25	-0.7
1,216,141	+		IAI47_05925	0.37	+0.5
1,216,151	+		IAI47_05925	0.39	+1.1
1,216,152	-		IAI47_05925	0.40	-1.5
1,216,152	-		IAI47_05925	0.40	-0.5
1,216,152	-		IAI47_05925	0.40	-1.0
1,216,164	-		IAI47_05925	0.42	-2.7
1,216,244	+		IAI47_05925	0.58	+0.4
1,216,244	+		IAI47_05925	0.58	-1.7
1,216,244	+		IAI47_05925	0.58	+0.2
1,216,245	-		IAI47_05925	0.58	+1.1
1,216,245	-		IAI47_05925	0.58	+0.8
1,216,245	-		IAI47_05925	0.58	+1.0
1,216,245	-		IAI47_05925	0.58	+0.0
1,216,245	-		IAI47_05925	0.58	-2.2
1,216,245	-		IAI47_05925	0.58	-0.4
1,216,245	-		IAI47_05925	0.58	-0.0
1,216,245	-		IAI47_05925	0.58	-0.4
1,216,246	+		IAI47_05925	0.59	-0.5
1,216,246	+		IAI47_05925	0.59	-1.4
1,216,247	-		IAI47_05925	0.59	-0.3
1,216,247	-		IAI47_05925	0.59	-0.3
1,216,247	-		IAI47_05925	0.59	+0.6
1,216,247	-		IAI47_05925	0.59	-0.6
1,216,247	-		IAI47_05925	0.59	-1.2
1,216,301	+		IAI47_05925	0.70	+0.2
1,216,301	+		IAI47_05925	0.70	-2.1
1,216,301	+		IAI47_05925	0.70	-0.5
1,216,301	+		IAI47_05925	0.70	-0.5
1,216,302	-		IAI47_05925	0.70	-1.5
1,216,302	-		IAI47_05925	0.70	+1.8
1,216,439	+				-0.8
1,216,439	+				+1.1
1,216,439	+				+2.1
1,216,439	+				+0.2
1,216,439	+				-1.1
1,216,439	+				+3.7
1,216,440	-				+0.4
1,216,440	-				+3.3
1,216,440	-				-0.6
1,216,440	-				-1.0
1,216,449	-				-0.0
1,216,449	-				+0.2
1,216,449	-				+0.3
1,216,464	+				-1.9
1,216,464	+				+1.8
1,216,465	-				+2.1
1,216,465	-				-0.8
1,216,465	-				+2.1
1,216,465	-				+2.5
1,216,465	-				+0.3
1,216,471	-				+0.2
1,216,471	-				+0.8
1,216,564	+		IAI47_05930	0.11	+1.2
1,216,564	+		IAI47_05930	0.11	+0.0
1,216,564	+		IAI47_05930	0.11	-1.9
1,216,565	-		IAI47_05930	0.11	+3.3
1,216,565	-		IAI47_05930	0.11	-0.2
1,216,565	-		IAI47_05930	0.11	+0.5
1,216,565	-		IAI47_05930	0.11	+0.3
1,216,581	+		IAI47_05930	0.12	+2.1
1,216,605	+		IAI47_05930	0.15	-1.0
1,216,605	+		IAI47_05930	0.15	+0.5
1,216,606	-		IAI47_05930	0.15	+1.8
1,216,662	+		IAI47_05930	0.21	+3.7
1,216,662	+		IAI47_05930	0.21	-1.2
1,216,663	-		IAI47_05930	0.21	+2.6
1,216,663	-		IAI47_05930	0.21	-0.0
1,216,731	+		IAI47_05930	0.28	-1.0
1,216,882	+		IAI47_05930	0.44	-0.9
1,216,882	+		IAI47_05930	0.44	+3.1
1,216,883	-		IAI47_05930	0.45	-0.8
1,216,920	+		IAI47_05930	0.48	-1.8
1,216,920	+		IAI47_05930	0.48	+2.2
1,216,921	-		IAI47_05930	0.49	+1.8
1,216,921	-		IAI47_05930	0.49	-0.8
1,216,921	-		IAI47_05930	0.49	-0.4
1,216,921	-		IAI47_05930	0.49	+2.9
1,216,921	-		IAI47_05930	0.49	+3.1
1,216,924	+		IAI47_05930	0.49	+2.2
1,216,925	-		IAI47_05930	0.49	+0.5
1,216,971	+		IAI47_05930	0.54	+0.7
1,216,971	+		IAI47_05930	0.54	+0.8
1,216,971	+		IAI47_05930	0.54	+1.6
1,216,972	-		IAI47_05930	0.54	+0.1
1,217,035	+		IAI47_05930	0.61	+2.3
1,217,035	+		IAI47_05930	0.61	+0.4
1,217,036	-		IAI47_05930	0.61	+0.6
1,217,134	+		IAI47_05930	0.71	-0.0
1,217,134	+		IAI47_05930	0.71	-1.0
1,217,134	+		IAI47_05930	0.71	-2.9
1,217,134	+		IAI47_05930	0.71	+1.4
1,217,135	-		IAI47_05930	0.71	-1.2
1,217,245	+		IAI47_05930	0.83	+3.1
1,217,245	+		IAI47_05930	0.83	+1.8
1,217,246	-		IAI47_05930	0.83	-0.2
1,217,246	-		IAI47_05930	0.83	+1.8
1,217,246	-		IAI47_05930	0.83	+2.3
1,217,246	-		IAI47_05930	0.83	-0.8
1,217,246	-		IAI47_05930	0.83	-0.9
1,217,257	-		IAI47_05930	0.84	+0.2
1,217,257	-		IAI47_05930	0.84	-1.4
1,217,257	-		IAI47_05930	0.84	+1.1
1,217,257	-		IAI47_05930	0.84	+1.0
1,217,321	-				-0.0
1,217,335	+				-0.5
1,217,335	+				+0.1
1,217,335	+				-2.4
1,217,335	+				+2.2
1,217,335	+				-0.1
1,217,335	+				-2.5
1,217,336	-				+0.3
1,217,336	-				-0.2
1,217,336	-				-0.2
1,217,336	-				-1.0
1,217,336	-				+2.8
1,217,336	-				-0.9
1,217,339	-				-1.8
1,217,339	-				+0.0
1,217,386	+				-2.1
1,217,386	+				-0.5
1,217,386	+				+1.2
1,217,386	+				+1.5
1,217,386	+				-1.0
1,217,386	+				+1.4
1,217,387	-				+0.0
1,217,387	-				+1.4
1,217,387	-				-0.4
1,217,387	-				-0.8
1,217,387	-				-2.2
1,217,388	+				-0.5
1,217,388	+				-0.4
1,217,388	+				+2.0
1,217,388	+				-2.1
1,217,389	-				-0.7
1,217,389	-				+0.3
1,217,389	-				-1.3
1,217,389	-				+1.2
1,217,389	-				+0.0
1,217,401	+				-0.7
1,217,401	+				+1.2
1,217,401	+				+0.1
1,217,402	-				+0.6
1,217,402	-				-1.0
1,217,406	+				-0.2
1,217,407	-				-0.4
1,217,407	-				+0.5
1,217,428	-				-2.0
1,217,428	-				-0.1
1,217,438	+				+1.5
1,217,438	+				-0.4
1,217,438	+				-0.2
1,217,439	-				+1.8
1,217,439	-				+0.2
1,217,439	-				+1.6
1,217,439	-				-0.0
1,217,439	-				-0.6
1,217,439	-				+2.1
1,217,446	-				+0.1