Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26175

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26170 and BWI76_RS26175 are separated by 168 nucleotidesBWI76_RS26175 and BWI76_RS26180 are separated by 19 nucleotidesBWI76_RS26180 and BWI76_RS26185 are separated by 59 nucleotides BWI76_RS26170: BWI76_RS26170 - transcriptional regulator MalT, at 5,410,347 to 5,413,052 _RS26170 BWI76_RS26175: BWI76_RS26175 - DeoR/GlpR family transcriptional regulator, at 5,413,221 to 5,413,979 _RS26175 BWI76_RS26180: BWI76_RS26180 - rhomboid family intramembrane serine protease GlpG, at 5,413,999 to 5,414,829 _RS26180 BWI76_RS26185: BWI76_RS26185 - thiosulfate sulfurtransferase, at 5,414,889 to 5,415,218 _RS26185 Position (kb) 5413 5414Strain fitness (log2 ratio) -3 -2 -1 0 1at 5412.554 kb on + strand, within BWI76_RS26170at 5412.892 kb on - strandat 5413.077 kb on + strandat 5413.290 kb on + strandat 5413.290 kb on + strandat 5413.291 kb on + strandat 5413.300 kb on + strand, within BWI76_RS26175at 5413.423 kb on - strand, within BWI76_RS26175at 5413.439 kb on - strand, within BWI76_RS26175at 5413.514 kb on - strand, within BWI76_RS26175at 5413.786 kb on + strand, within BWI76_RS26175at 5413.805 kb on - strand, within BWI76_RS26175at 5414.067 kb on + strandat 5414.137 kb on - strand, within BWI76_RS26180at 5414.249 kb on + strand, within BWI76_RS26180at 5414.270 kb on + strand, within BWI76_RS26180at 5414.384 kb on - strand, within BWI76_RS26180at 5414.395 kb on + strand, within BWI76_RS26180at 5414.395 kb on + strand, within BWI76_RS26180at 5414.447 kb on + strand, within BWI76_RS26180at 5414.608 kb on + strand, within BWI76_RS26180at 5414.785 kb on + strandat 5414.793 kb on - strandat 5414.886 kb on + strandat 5414.964 kb on - strand, within BWI76_RS26185

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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5,412,554 + BWI76_RS26170 0.82 -0.6
5,412,892 - +0.0
5,413,077 + +0.7
5,413,290 + -2.1
5,413,290 + +1.7
5,413,291 + -1.5
5,413,300 + BWI76_RS26175 0.10 -1.8
5,413,423 - BWI76_RS26175 0.27 -1.0
5,413,439 - BWI76_RS26175 0.29 -3.0
5,413,514 - BWI76_RS26175 0.39 -0.5
5,413,786 + BWI76_RS26175 0.74 -2.7
5,413,805 - BWI76_RS26175 0.77 +1.2
5,414,067 + -0.7
5,414,137 - BWI76_RS26180 0.17 -0.5
5,414,249 + BWI76_RS26180 0.30 +0.1
5,414,270 + BWI76_RS26180 0.33 -0.9
5,414,384 - BWI76_RS26180 0.46 -1.1
5,414,395 + BWI76_RS26180 0.48 +0.1
5,414,395 + BWI76_RS26180 0.48 +0.0
5,414,447 + BWI76_RS26180 0.54 -2.2
5,414,608 + BWI76_RS26180 0.73 -0.7
5,414,785 + -0.1
5,414,793 - -1.6
5,414,886 + -0.7
5,414,964 - BWI76_RS26185 0.23 -0.6

Or see this region's nucleotide sequence