Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25890 and BWI76_RS25895 are separated by 7 nucleotides BWI76_RS25895 and BWI76_RS25900 overlap by 1 nucleotides BWI76_RS25900 and BWI76_RS25905 overlap by 1 nucleotides BWI76_RS25905 and BWI76_RS25910 are separated by 166 nucleotides
BWI76_RS25890: BWI76_RS25890 - sulfurtransferase TusB, at 5,356,199 to 5,356,486
_RS25890
BWI76_RS25895: BWI76_RS25895 - sulfurtransferase TusC, at 5,356,494 to 5,356,853
_RS25895
BWI76_RS25900: BWI76_RS25900 - sulfurtransferase TusD, at 5,356,853 to 5,357,239
_RS25900
BWI76_RS25905: BWI76_RS25905 - hypothetical protein, at 5,357,239 to 5,357,961
_RS25905
BWI76_RS25910: BWI76_RS25910 - peptidyl-prolyl cis-trans isomerase, at 5,358,128 to 5,358,946
_RS25910
Position (kb) 5357
5358 Strain fitness (log2 ratio) -1
0
1 at 5357.275 kb on - strand at 5357.869 kb on - strand, within BWI76_RS25905 at 5358.166 kb on - strand at 5358.387 kb on + strand, within BWI76_RS25910 at 5358.434 kb on - strand, within BWI76_RS25910 at 5358.507 kb on + strand, within BWI76_RS25910 at 5358.607 kb on - strand, within BWI76_RS25910 at 5358.886 kb on - strand at 5358.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 5,357,275 - -1.2 5,357,869 - BWI76_RS25905 0.87 -1.7 5,358,166 - -1.5 5,358,387 + BWI76_RS25910 0.32 +0.2 5,358,434 - BWI76_RS25910 0.37 -0.2 5,358,507 + BWI76_RS25910 0.46 -1.5 5,358,607 - BWI76_RS25910 0.58 -0.1 5,358,886 - -0.8 5,358,953 + -0.5
Or see this region's nucleotide sequence