Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23355

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23350 and BWI76_RS23355 are separated by 295 nucleotidesBWI76_RS23355 and BWI76_RS23360 are separated by 125 nucleotides BWI76_RS23350: BWI76_RS23350 - PTS system lactose/cellobiose family transporter subunit IIC, at 4,868,570 to 4,869,907 _RS23350 BWI76_RS23355: BWI76_RS23355 - LacI family transcriptional regulator, at 4,870,203 to 4,871,213 _RS23355 BWI76_RS23360: BWI76_RS23360 - diaminopimelate decarboxylase, at 4,871,339 to 4,872,601 _RS23360 Position (kb) 4870 4871 4872Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4869.206 kb on + strand, within BWI76_RS23350at 4869.242 kb on + strand, within BWI76_RS23350at 4869.250 kb on - strand, within BWI76_RS23350at 4869.262 kb on + strand, within BWI76_RS23350at 4869.564 kb on - strand, within BWI76_RS23350at 4869.686 kb on + strand, within BWI76_RS23350at 4869.694 kb on - strand, within BWI76_RS23350at 4869.729 kb on - strand, within BWI76_RS23350at 4869.840 kb on - strandat 4870.024 kb on + strandat 4870.513 kb on + strand, within BWI76_RS23355at 4870.532 kb on - strand, within BWI76_RS23355at 4870.705 kb on - strand, within BWI76_RS23355at 4870.730 kb on - strand, within BWI76_RS23355at 4870.884 kb on - strand, within BWI76_RS23355at 4871.337 kb on + strandat 4871.385 kb on - strandat 4872.158 kb on + strand, within BWI76_RS23360

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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4,869,206 + BWI76_RS23350 0.48 +0.2
4,869,242 + BWI76_RS23350 0.50 -1.2
4,869,250 - BWI76_RS23350 0.51 +0.2
4,869,262 + BWI76_RS23350 0.52 +1.0
4,869,564 - BWI76_RS23350 0.74 +0.9
4,869,686 + BWI76_RS23350 0.83 +0.2
4,869,694 - BWI76_RS23350 0.84 +0.4
4,869,729 - BWI76_RS23350 0.87 +0.6
4,869,840 - +0.5
4,870,024 + +0.0
4,870,513 + BWI76_RS23355 0.31 +2.6
4,870,532 - BWI76_RS23355 0.33 -1.4
4,870,705 - BWI76_RS23355 0.50 -0.4
4,870,730 - BWI76_RS23355 0.52 -1.4
4,870,884 - BWI76_RS23355 0.67 -1.2
4,871,337 + -0.0
4,871,385 - -3.5
4,872,158 + BWI76_RS23360 0.65 -1.4

Or see this region's nucleotide sequence