Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22075 and BWI76_RS22080 are separated by 241 nucleotides BWI76_RS22080 and BWI76_RS22085 overlap by 11 nucleotides BWI76_RS22085 and BWI76_RS22090 are separated by 91 nucleotides BWI76_RS22090 and BWI76_RS22095 are separated by 131 nucleotides
BWI76_RS22075: BWI76_RS22075 - glycine betaine ABC transporter substrate-binding protein, at 4,608,752 to 4,609,747
_RS22075
BWI76_RS22080: BWI76_RS22080 - AzlC family protein, at 4,609,989 to 4,610,735
_RS22080
BWI76_RS22085: BWI76_RS22085 - L-valine transporter subunit YgaH, at 4,610,725 to 4,611,060
_RS22085
BWI76_RS22090: BWI76_RS22090 - transcriptional regulator, at 4,611,152 to 4,611,682
_RS22090
BWI76_RS22095: BWI76_RS22095 - multidrug export protein EmrA, at 4,611,814 to 4,612,986
_RS22095
Position (kb) 4610
4611
4612 Strain fitness (log2 ratio) -2
-1
0
1 at 4609.757 kb on + strand at 4609.819 kb on - strand at 4609.839 kb on - strand at 4609.922 kb on - strand at 4609.924 kb on + strand at 4610.281 kb on - strand, within BWI76_RS22080 at 4610.350 kb on + strand, within BWI76_RS22080 at 4610.360 kb on - strand, within BWI76_RS22080 at 4610.433 kb on + strand, within BWI76_RS22080 at 4610.433 kb on + strand, within BWI76_RS22080 at 4610.523 kb on + strand, within BWI76_RS22080 at 4610.538 kb on - strand, within BWI76_RS22080 at 4610.557 kb on - strand, within BWI76_RS22080 at 4610.663 kb on + strand at 4610.697 kb on + strand at 4610.699 kb on - strand at 4610.710 kb on - strand at 4610.737 kb on + strand at 4610.964 kb on - strand, within BWI76_RS22085 at 4611.016 kb on + strand, within BWI76_RS22085 at 4611.016 kb on + strand, within BWI76_RS22085 at 4611.504 kb on + strand, within BWI76_RS22090 at 4611.570 kb on + strand, within BWI76_RS22090 at 4611.615 kb on + strand, within BWI76_RS22090 at 4611.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,609,757 + +0.3 4,609,819 - -0.0 4,609,839 - -0.3 4,609,922 - +0.1 4,609,924 + -0.0 4,610,281 - BWI76_RS22080 0.39 +0.1 4,610,350 + BWI76_RS22080 0.48 +0.2 4,610,360 - BWI76_RS22080 0.50 +1.0 4,610,433 + BWI76_RS22080 0.59 -0.2 4,610,433 + BWI76_RS22080 0.59 -0.1 4,610,523 + BWI76_RS22080 0.71 -1.5 4,610,538 - BWI76_RS22080 0.73 +0.8 4,610,557 - BWI76_RS22080 0.76 -1.0 4,610,663 + -0.9 4,610,697 + -0.6 4,610,699 - -0.7 4,610,710 - +0.2 4,610,737 + +0.7 4,610,964 - BWI76_RS22085 0.71 -0.8 4,611,016 + BWI76_RS22085 0.87 -0.5 4,611,016 + BWI76_RS22085 0.87 -2.1 4,611,504 + BWI76_RS22090 0.66 -0.5 4,611,570 + BWI76_RS22090 0.79 +0.2 4,611,615 + BWI76_RS22090 0.87 +0.5 4,611,683 + +0.7
Or see this region's nucleotide sequence