Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20510

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20500 and BWI76_RS20505 are separated by 11 nucleotidesBWI76_RS20505 and BWI76_RS20510 are separated by 45 nucleotidesBWI76_RS20510 and BWI76_RS20515 are separated by 254 nucleotides BWI76_RS20500: BWI76_RS20500 - signal transduction histidine kinase LytS, at 4,292,579 to 4,294,276 _RS20500 BWI76_RS20505: BWI76_RS20505 - DNA-binding response regulator, at 4,294,288 to 4,295,031 _RS20505 BWI76_RS20510: BWI76_RS20510 - glucokinase, at 4,295,077 to 4,296,042 _RS20510 BWI76_RS20515: BWI76_RS20515 - ion channel protein, at 4,296,297 to 4,297,532 _RS20515 Position (kb) 4295 4296 4297Strain fitness (log2 ratio) -2 -1 0 1at 4294.081 kb on - strand, within BWI76_RS20500at 4294.082 kb on - strand, within BWI76_RS20500at 4294.098 kb on + strand, within BWI76_RS20500at 4294.098 kb on + strand, within BWI76_RS20500at 4294.098 kb on + strand, within BWI76_RS20500at 4294.099 kb on + strand, within BWI76_RS20500at 4294.106 kb on - strand, within BWI76_RS20500at 4294.156 kb on + strandat 4294.160 kb on + strandat 4294.176 kb on - strandat 4294.181 kb on - strandat 4294.188 kb on + strandat 4294.242 kb on + strandat 4294.252 kb on - strandat 4294.254 kb on + strandat 4294.261 kb on - strandat 4294.391 kb on + strand, within BWI76_RS20505at 4294.401 kb on + strand, within BWI76_RS20505at 4294.469 kb on + strand, within BWI76_RS20505at 4294.504 kb on + strand, within BWI76_RS20505at 4294.549 kb on + strand, within BWI76_RS20505at 4294.557 kb on - strand, within BWI76_RS20505at 4294.557 kb on - strand, within BWI76_RS20505at 4294.584 kb on + strand, within BWI76_RS20505at 4294.591 kb on - strand, within BWI76_RS20505at 4294.592 kb on - strand, within BWI76_RS20505at 4294.593 kb on - strand, within BWI76_RS20505at 4294.637 kb on + strand, within BWI76_RS20505at 4294.659 kb on + strand, within BWI76_RS20505at 4294.659 kb on + strand, within BWI76_RS20505at 4294.659 kb on + strand, within BWI76_RS20505at 4294.659 kb on + strand, within BWI76_RS20505at 4294.667 kb on - strand, within BWI76_RS20505at 4294.684 kb on - strand, within BWI76_RS20505at 4294.727 kb on - strand, within BWI76_RS20505at 4294.727 kb on - strand, within BWI76_RS20505at 4294.895 kb on + strand, within BWI76_RS20505at 4294.951 kb on - strand, within BWI76_RS20505at 4294.951 kb on - strand, within BWI76_RS20505at 4295.006 kb on - strandat 4295.337 kb on + strand, within BWI76_RS20510at 4295.468 kb on - strand, within BWI76_RS20510at 4295.492 kb on - strand, within BWI76_RS20510at 4295.651 kb on + strand, within BWI76_RS20510at 4295.723 kb on + strand, within BWI76_RS20510at 4295.859 kb on + strand, within BWI76_RS20510at 4295.859 kb on - strand, within BWI76_RS20510at 4295.870 kb on + strand, within BWI76_RS20510at 4295.882 kb on + strand, within BWI76_RS20510at 4295.900 kb on - strand, within BWI76_RS20510at 4295.910 kb on - strand, within BWI76_RS20510at 4296.119 kb on + strandat 4296.127 kb on - strandat 4296.127 kb on - strandat 4296.213 kb on - strandat 4296.243 kb on + strandat 4296.272 kb on - strandat 4296.428 kb on + strand, within BWI76_RS20515at 4296.637 kb on + strandat 4296.645 kb on - strand, within BWI76_RS20515at 4296.779 kb on - strand, within BWI76_RS20515at 4296.955 kb on - strand, within BWI76_RS20515

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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4,294,081 - BWI76_RS20500 0.88 +0.1
4,294,082 - BWI76_RS20500 0.89 -0.1
4,294,098 + BWI76_RS20500 0.89 -2.6
4,294,098 + BWI76_RS20500 0.89 -0.2
4,294,098 + BWI76_RS20500 0.89 +0.2
4,294,099 + BWI76_RS20500 0.90 -0.1
4,294,106 - BWI76_RS20500 0.90 +1.2
4,294,156 + +0.2
4,294,160 + -0.1
4,294,176 - -1.2
4,294,181 - +0.8
4,294,188 + +0.8
4,294,242 + -0.6
4,294,252 - +0.1
4,294,254 + +0.7
4,294,261 - -0.2
4,294,391 + BWI76_RS20505 0.14 -0.1
4,294,401 + BWI76_RS20505 0.15 +0.8
4,294,469 + BWI76_RS20505 0.24 +0.2
4,294,504 + BWI76_RS20505 0.29 -1.4
4,294,549 + BWI76_RS20505 0.35 +0.1
4,294,557 - BWI76_RS20505 0.36 +0.6
4,294,557 - BWI76_RS20505 0.36 -0.0
4,294,584 + BWI76_RS20505 0.40 +0.1
4,294,591 - BWI76_RS20505 0.41 -0.2
4,294,592 - BWI76_RS20505 0.41 +0.6
4,294,593 - BWI76_RS20505 0.41 -0.0
4,294,637 + BWI76_RS20505 0.47 +1.0
4,294,659 + BWI76_RS20505 0.50 -0.8
4,294,659 + BWI76_RS20505 0.50 -0.4
4,294,659 + BWI76_RS20505 0.50 +0.5
4,294,659 + BWI76_RS20505 0.50 +0.6
4,294,667 - BWI76_RS20505 0.51 -0.3
4,294,684 - BWI76_RS20505 0.53 -1.2
4,294,727 - BWI76_RS20505 0.59 +0.7
4,294,727 - BWI76_RS20505 0.59 +0.5
4,294,895 + BWI76_RS20505 0.82 -0.8
4,294,951 - BWI76_RS20505 0.89 +1.4
4,294,951 - BWI76_RS20505 0.89 -0.3
4,295,006 - -0.9
4,295,337 + BWI76_RS20510 0.27 +0.3
4,295,468 - BWI76_RS20510 0.40 -0.4
4,295,492 - BWI76_RS20510 0.43 +0.1
4,295,651 + BWI76_RS20510 0.59 +0.4
4,295,723 + BWI76_RS20510 0.67 -1.1
4,295,859 + BWI76_RS20510 0.81 -0.2
4,295,859 - BWI76_RS20510 0.81 -0.3
4,295,870 + BWI76_RS20510 0.82 +0.7
4,295,882 + BWI76_RS20510 0.83 -0.6
4,295,900 - BWI76_RS20510 0.85 +0.9
4,295,910 - BWI76_RS20510 0.86 +0.8
4,296,119 + +0.0
4,296,127 - +0.2
4,296,127 - +0.2
4,296,213 - +0.1
4,296,243 + +0.1
4,296,272 - -1.2
4,296,428 + BWI76_RS20515 0.11 +0.8
4,296,637 + +0.6
4,296,645 - BWI76_RS20515 0.28 -0.0
4,296,779 - BWI76_RS20515 0.39 +0.1
4,296,955 - BWI76_RS20515 0.53 +0.2

Or see this region's nucleotide sequence