Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20500 and BWI76_RS20505 are separated by 11 nucleotides BWI76_RS20505 and BWI76_RS20510 are separated by 45 nucleotides BWI76_RS20510 and BWI76_RS20515 are separated by 254 nucleotides
BWI76_RS20500: BWI76_RS20500 - signal transduction histidine kinase LytS, at 4,292,579 to 4,294,276
_RS20500
BWI76_RS20505: BWI76_RS20505 - DNA-binding response regulator, at 4,294,288 to 4,295,031
_RS20505
BWI76_RS20510: BWI76_RS20510 - glucokinase, at 4,295,077 to 4,296,042
_RS20510
BWI76_RS20515: BWI76_RS20515 - ion channel protein, at 4,296,297 to 4,297,532
_RS20515
Position (kb)
4295
4296
4297 Strain fitness (log2 ratio)
-2
-1
0
1 at 4294.081 kb on - strand, within BWI76_RS20500 at 4294.082 kb on - strand, within BWI76_RS20500 at 4294.098 kb on + strand, within BWI76_RS20500 at 4294.098 kb on + strand, within BWI76_RS20500 at 4294.098 kb on + strand, within BWI76_RS20500 at 4294.099 kb on + strand, within BWI76_RS20500 at 4294.106 kb on - strand, within BWI76_RS20500 at 4294.156 kb on + strand at 4294.160 kb on + strand at 4294.176 kb on - strand at 4294.181 kb on - strand at 4294.188 kb on + strand at 4294.242 kb on + strand at 4294.252 kb on - strand at 4294.254 kb on + strand at 4294.261 kb on - strand at 4294.391 kb on + strand, within BWI76_RS20505 at 4294.401 kb on + strand, within BWI76_RS20505 at 4294.469 kb on + strand, within BWI76_RS20505 at 4294.504 kb on + strand, within BWI76_RS20505 at 4294.549 kb on + strand, within BWI76_RS20505 at 4294.557 kb on - strand, within BWI76_RS20505 at 4294.557 kb on - strand, within BWI76_RS20505 at 4294.584 kb on + strand, within BWI76_RS20505 at 4294.591 kb on - strand, within BWI76_RS20505 at 4294.592 kb on - strand, within BWI76_RS20505 at 4294.593 kb on - strand, within BWI76_RS20505 at 4294.637 kb on + strand, within BWI76_RS20505 at 4294.659 kb on + strand, within BWI76_RS20505 at 4294.659 kb on + strand, within BWI76_RS20505 at 4294.659 kb on + strand, within BWI76_RS20505 at 4294.659 kb on + strand, within BWI76_RS20505 at 4294.667 kb on - strand, within BWI76_RS20505 at 4294.684 kb on - strand, within BWI76_RS20505 at 4294.727 kb on - strand, within BWI76_RS20505 at 4294.727 kb on - strand, within BWI76_RS20505 at 4294.895 kb on + strand, within BWI76_RS20505 at 4294.951 kb on - strand, within BWI76_RS20505 at 4294.951 kb on - strand, within BWI76_RS20505 at 4295.006 kb on - strand at 4295.337 kb on + strand, within BWI76_RS20510 at 4295.468 kb on - strand, within BWI76_RS20510 at 4295.492 kb on - strand, within BWI76_RS20510 at 4295.651 kb on + strand, within BWI76_RS20510 at 4295.723 kb on + strand, within BWI76_RS20510 at 4295.859 kb on + strand, within BWI76_RS20510 at 4295.859 kb on - strand, within BWI76_RS20510 at 4295.870 kb on + strand, within BWI76_RS20510 at 4295.882 kb on + strand, within BWI76_RS20510 at 4295.900 kb on - strand, within BWI76_RS20510 at 4295.910 kb on - strand, within BWI76_RS20510 at 4296.119 kb on + strand at 4296.127 kb on - strand at 4296.127 kb on - strand at 4296.213 kb on - strand at 4296.243 kb on + strand at 4296.272 kb on - strand at 4296.428 kb on + strand, within BWI76_RS20515 at 4296.637 kb on + strand at 4296.645 kb on - strand, within BWI76_RS20515 at 4296.779 kb on - strand, within BWI76_RS20515 at 4296.955 kb on - strand, within BWI76_RS20515
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,294,081 - BWI76_RS20500 0.88 +0.1 4,294,082 - BWI76_RS20500 0.89 -0.1 4,294,098 + BWI76_RS20500 0.89 -2.6 4,294,098 + BWI76_RS20500 0.89 -0.2 4,294,098 + BWI76_RS20500 0.89 +0.2 4,294,099 + BWI76_RS20500 0.90 -0.1 4,294,106 - BWI76_RS20500 0.90 +1.2 4,294,156 + +0.2 4,294,160 + -0.1 4,294,176 - -1.2 4,294,181 - +0.8 4,294,188 + +0.8 4,294,242 + -0.6 4,294,252 - +0.1 4,294,254 + +0.7 4,294,261 - -0.2 4,294,391 + BWI76_RS20505 0.14 -0.1 4,294,401 + BWI76_RS20505 0.15 +0.8 4,294,469 + BWI76_RS20505 0.24 +0.2 4,294,504 + BWI76_RS20505 0.29 -1.4 4,294,549 + BWI76_RS20505 0.35 +0.1 4,294,557 - BWI76_RS20505 0.36 +0.6 4,294,557 - BWI76_RS20505 0.36 -0.0 4,294,584 + BWI76_RS20505 0.40 +0.1 4,294,591 - BWI76_RS20505 0.41 -0.2 4,294,592 - BWI76_RS20505 0.41 +0.6 4,294,593 - BWI76_RS20505 0.41 -0.0 4,294,637 + BWI76_RS20505 0.47 +1.0 4,294,659 + BWI76_RS20505 0.50 -0.8 4,294,659 + BWI76_RS20505 0.50 -0.4 4,294,659 + BWI76_RS20505 0.50 +0.5 4,294,659 + BWI76_RS20505 0.50 +0.6 4,294,667 - BWI76_RS20505 0.51 -0.3 4,294,684 - BWI76_RS20505 0.53 -1.2 4,294,727 - BWI76_RS20505 0.59 +0.7 4,294,727 - BWI76_RS20505 0.59 +0.5 4,294,895 + BWI76_RS20505 0.82 -0.8 4,294,951 - BWI76_RS20505 0.89 +1.4 4,294,951 - BWI76_RS20505 0.89 -0.3 4,295,006 - -0.9 4,295,337 + BWI76_RS20510 0.27 +0.3 4,295,468 - BWI76_RS20510 0.40 -0.4 4,295,492 - BWI76_RS20510 0.43 +0.1 4,295,651 + BWI76_RS20510 0.59 +0.4 4,295,723 + BWI76_RS20510 0.67 -1.1 4,295,859 + BWI76_RS20510 0.81 -0.2 4,295,859 - BWI76_RS20510 0.81 -0.3 4,295,870 + BWI76_RS20510 0.82 +0.7 4,295,882 + BWI76_RS20510 0.83 -0.6 4,295,900 - BWI76_RS20510 0.85 +0.9 4,295,910 - BWI76_RS20510 0.86 +0.8 4,296,119 + +0.0 4,296,127 - +0.2 4,296,127 - +0.2 4,296,213 - +0.1 4,296,243 + +0.1 4,296,272 - -1.2 4,296,428 + BWI76_RS20515 0.11 +0.8 4,296,637 + +0.6 4,296,645 - BWI76_RS20515 0.28 -0.0 4,296,779 - BWI76_RS20515 0.39 +0.1 4,296,955 - BWI76_RS20515 0.53 +0.2
Or see this region's nucleotide sequence