Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20260 and BWI76_RS20265 are separated by 79 nucleotides BWI76_RS20265 and BWI76_RS20270 are separated by 236 nucleotides BWI76_RS20270 and BWI76_RS20275 are separated by 2 nucleotides BWI76_RS20275 and BWI76_RS20280 are separated by 58 nucleotides
BWI76_RS20260: BWI76_RS20260 - PTS mannitol transporter subunit IIB, at 4,247,032 to 4,247,304
_RS20260
BWI76_RS20265: BWI76_RS20265 - sugar phosphotransferase subunit IIA, at 4,247,384 to 4,247,827
_RS20265
BWI76_RS20270: BWI76_RS20270 - hypothetical protein, at 4,248,064 to 4,249,083
_RS20270
BWI76_RS20275: BWI76_RS20275 - NUDIX hydrolase, at 4,249,086 to 4,249,640
_RS20275
BWI76_RS20280: BWI76_RS20280 - phosphodiesterase, at 4,249,699 to 4,250,250
_RS20280
Position (kb) 4248
4249
4250 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4247.064 kb on - strand, within BWI76_RS20260 at 4247.064 kb on - strand, within BWI76_RS20260 at 4247.064 kb on - strand, within BWI76_RS20260 at 4247.175 kb on + strand, within BWI76_RS20260 at 4247.180 kb on + strand, within BWI76_RS20260 at 4247.180 kb on + strand, within BWI76_RS20260 at 4247.188 kb on - strand, within BWI76_RS20260 at 4247.188 kb on - strand, within BWI76_RS20260 at 4247.188 kb on - strand, within BWI76_RS20260 at 4247.188 kb on - strand, within BWI76_RS20260 at 4247.188 kb on - strand, within BWI76_RS20260 at 4247.188 kb on - strand, within BWI76_RS20260 at 4247.188 kb on - strand, within BWI76_RS20260 at 4247.188 kb on - strand, within BWI76_RS20260 at 4247.190 kb on + strand, within BWI76_RS20260 at 4247.190 kb on + strand at 4247.195 kb on + strand at 4247.195 kb on + strand, within BWI76_RS20260 at 4247.197 kb on + strand, within BWI76_RS20260 at 4247.197 kb on + strand, within BWI76_RS20260 at 4247.197 kb on - strand, within BWI76_RS20260 at 4247.198 kb on - strand, within BWI76_RS20260 at 4247.198 kb on - strand, within BWI76_RS20260 at 4247.198 kb on - strand, within BWI76_RS20260 at 4247.198 kb on - strand, within BWI76_RS20260 at 4247.198 kb on - strand, within BWI76_RS20260 at 4247.198 kb on - strand, within BWI76_RS20260 at 4247.199 kb on + strand, within BWI76_RS20260 at 4247.200 kb on + strand, within BWI76_RS20260 at 4247.200 kb on + strand, within BWI76_RS20260 at 4247.207 kb on - strand, within BWI76_RS20260 at 4247.207 kb on - strand at 4247.207 kb on - strand, within BWI76_RS20260 at 4247.208 kb on - strand, within BWI76_RS20260 at 4247.208 kb on - strand, within BWI76_RS20260 at 4247.208 kb on - strand, within BWI76_RS20260 at 4247.208 kb on - strand, within BWI76_RS20260 at 4247.212 kb on - strand, within BWI76_RS20260 at 4247.213 kb on - strand, within BWI76_RS20260 at 4247.269 kb on + strand, within BWI76_RS20260 at 4247.269 kb on + strand, within BWI76_RS20260 at 4247.272 kb on - strand, within BWI76_RS20260 at 4247.274 kb on + strand, within BWI76_RS20260 at 4247.274 kb on + strand, within BWI76_RS20260 at 4247.277 kb on - strand at 4247.277 kb on - strand at 4247.277 kb on - strand at 4247.279 kb on + strand at 4247.282 kb on - strand at 4247.282 kb on - strand at 4247.282 kb on - strand at 4247.282 kb on - strand at 4247.282 kb on - strand at 4247.282 kb on - strand at 4247.282 kb on - strand at 4247.282 kb on - strand at 4247.282 kb on - strand at 4247.282 kb on - strand at 4247.282 kb on - strand at 4247.316 kb on + strand at 4247.326 kb on + strand at 4247.326 kb on + strand at 4247.326 kb on + strand at 4247.326 kb on + strand at 4247.326 kb on + strand at 4247.326 kb on + strand at 4247.326 kb on + strand at 4247.326 kb on + strand at 4247.334 kb on - strand at 4247.334 kb on - strand at 4247.334 kb on - strand at 4247.334 kb on - strand at 4247.344 kb on - strand at 4247.345 kb on - strand at 4247.347 kb on - strand at 4247.347 kb on - strand at 4247.354 kb on - strand at 4247.354 kb on - strand at 4247.421 kb on - strand at 4247.421 kb on - strand at 4247.427 kb on - strand at 4247.491 kb on - strand, within BWI76_RS20265 at 4247.543 kb on + strand, within BWI76_RS20265 at 4247.557 kb on + strand, within BWI76_RS20265 at 4247.579 kb on - strand, within BWI76_RS20265 at 4247.580 kb on + strand, within BWI76_RS20265 at 4247.580 kb on + strand, within BWI76_RS20265 at 4247.583 kb on - strand, within BWI76_RS20265 at 4247.596 kb on + strand, within BWI76_RS20265 at 4247.596 kb on + strand, within BWI76_RS20265 at 4247.596 kb on + strand, within BWI76_RS20265 at 4247.596 kb on + strand, within BWI76_RS20265 at 4247.596 kb on + strand, within BWI76_RS20265 at 4247.596 kb on + strand, within BWI76_RS20265 at 4247.596 kb on + strand, within BWI76_RS20265 at 4247.596 kb on + strand, within BWI76_RS20265 at 4247.597 kb on + strand, within BWI76_RS20265 at 4247.597 kb on + strand, within BWI76_RS20265 at 4247.604 kb on - strand at 4247.604 kb on - strand, within BWI76_RS20265 at 4247.604 kb on - strand, within BWI76_RS20265 at 4247.604 kb on - strand, within BWI76_RS20265 at 4247.604 kb on - strand, within BWI76_RS20265 at 4247.604 kb on - strand, within BWI76_RS20265 at 4247.604 kb on - strand, within BWI76_RS20265 at 4247.604 kb on - strand, within BWI76_RS20265 at 4247.605 kb on - strand, within BWI76_RS20265 at 4247.605 kb on - strand, within BWI76_RS20265 at 4247.613 kb on + strand, within BWI76_RS20265 at 4247.639 kb on + strand, within BWI76_RS20265 at 4247.656 kb on + strand, within BWI76_RS20265 at 4247.664 kb on - strand, within BWI76_RS20265 at 4247.675 kb on + strand at 4247.683 kb on - strand, within BWI76_RS20265 at 4247.683 kb on - strand, within BWI76_RS20265 at 4248.317 kb on + strand, within BWI76_RS20270 at 4248.402 kb on - strand, within BWI76_RS20270 at 4248.647 kb on - strand, within BWI76_RS20270 at 4248.689 kb on + strand, within BWI76_RS20270 at 4248.698 kb on - strand, within BWI76_RS20270 at 4248.726 kb on - strand, within BWI76_RS20270 at 4248.732 kb on + strand, within BWI76_RS20270 at 4248.845 kb on + strand, within BWI76_RS20270 at 4248.908 kb on + strand at 4249.402 kb on - strand, within BWI76_RS20275 at 4249.673 kb on - strand at 4249.776 kb on + strand, within BWI76_RS20280 at 4249.885 kb on - strand, within BWI76_RS20280 at 4249.922 kb on + strand, within BWI76_RS20280
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,247,064 - BWI76_RS20260 0.12 -0.6 4,247,064 - BWI76_RS20260 0.12 -1.2 4,247,064 - BWI76_RS20260 0.12 +0.1 4,247,175 + BWI76_RS20260 0.52 +0.0 4,247,180 + BWI76_RS20260 0.54 +2.9 4,247,180 + BWI76_RS20260 0.54 +1.2 4,247,188 - BWI76_RS20260 0.57 -0.5 4,247,188 - BWI76_RS20260 0.57 -0.9 4,247,188 - BWI76_RS20260 0.57 +0.3 4,247,188 - BWI76_RS20260 0.57 +0.3 4,247,188 - BWI76_RS20260 0.57 -0.7 4,247,188 - BWI76_RS20260 0.57 -1.4 4,247,188 - BWI76_RS20260 0.57 -0.5 4,247,188 - BWI76_RS20260 0.57 +0.5 4,247,190 + BWI76_RS20260 0.58 +0.2 4,247,190 + +0.0 4,247,195 + +0.0 4,247,195 + BWI76_RS20260 0.60 +1.2 4,247,197 + BWI76_RS20260 0.60 -0.4 4,247,197 + BWI76_RS20260 0.60 +0.1 4,247,197 - BWI76_RS20260 0.60 +0.0 4,247,198 - BWI76_RS20260 0.61 -1.9 4,247,198 - BWI76_RS20260 0.61 +0.3 4,247,198 - BWI76_RS20260 0.61 -0.4 4,247,198 - BWI76_RS20260 0.61 +0.6 4,247,198 - BWI76_RS20260 0.61 -0.9 4,247,198 - BWI76_RS20260 0.61 -0.1 4,247,199 + BWI76_RS20260 0.61 -0.7 4,247,200 + BWI76_RS20260 0.62 -0.5 4,247,200 + BWI76_RS20260 0.62 -2.9 4,247,207 - BWI76_RS20260 0.64 +0.2 4,247,207 - +0.6 4,247,207 - BWI76_RS20260 0.64 -0.2 4,247,208 - BWI76_RS20260 0.64 -2.5 4,247,208 - BWI76_RS20260 0.64 -0.4 4,247,208 - BWI76_RS20260 0.64 -0.0 4,247,208 - BWI76_RS20260 0.64 +0.1 4,247,212 - BWI76_RS20260 0.66 -1.2 4,247,213 - BWI76_RS20260 0.66 +1.1 4,247,269 + BWI76_RS20260 0.87 +0.7 4,247,269 + BWI76_RS20260 0.87 -0.7 4,247,272 - BWI76_RS20260 0.88 +0.0 4,247,274 + BWI76_RS20260 0.89 +0.6 4,247,274 + BWI76_RS20260 0.89 +0.0 4,247,277 - -0.6 4,247,277 - -1.0 4,247,277 - -0.6 4,247,279 + -0.6 4,247,282 - +0.3 4,247,282 - +0.6 4,247,282 - -0.3 4,247,282 - +0.2 4,247,282 - -1.5 4,247,282 - -0.2 4,247,282 - +0.4 4,247,282 - +0.7 4,247,282 - -0.2 4,247,282 - -0.2 4,247,282 - -0.1 4,247,316 + -0.6 4,247,326 + -0.9 4,247,326 + +0.0 4,247,326 + +0.3 4,247,326 + -0.4 4,247,326 + -0.2 4,247,326 + +0.8 4,247,326 + -0.4 4,247,326 + +0.7 4,247,334 - +0.4 4,247,334 - -0.6 4,247,334 - +0.0 4,247,334 - +0.1 4,247,344 - +0.4 4,247,345 - -0.2 4,247,347 - -0.3 4,247,347 - +0.1 4,247,354 - +0.3 4,247,354 - -0.4 4,247,421 - -0.2 4,247,421 - +0.9 4,247,427 - +0.4 4,247,491 - BWI76_RS20265 0.24 +1.2 4,247,543 + BWI76_RS20265 0.36 -1.0 4,247,557 + BWI76_RS20265 0.39 -0.4 4,247,579 - BWI76_RS20265 0.44 -0.3 4,247,580 + BWI76_RS20265 0.44 -0.1 4,247,580 + BWI76_RS20265 0.44 -0.6 4,247,583 - BWI76_RS20265 0.45 -0.1 4,247,596 + BWI76_RS20265 0.48 +0.6 4,247,596 + BWI76_RS20265 0.48 -0.1 4,247,596 + BWI76_RS20265 0.48 +0.9 4,247,596 + BWI76_RS20265 0.48 +0.3 4,247,596 + BWI76_RS20265 0.48 +0.3 4,247,596 + BWI76_RS20265 0.48 +0.7 4,247,596 + BWI76_RS20265 0.48 +0.1 4,247,596 + BWI76_RS20265 0.48 +1.0 4,247,597 + BWI76_RS20265 0.48 +0.0 4,247,597 + BWI76_RS20265 0.48 -0.6 4,247,604 - +1.9 4,247,604 - BWI76_RS20265 0.50 -0.8 4,247,604 - BWI76_RS20265 0.50 -0.8 4,247,604 - BWI76_RS20265 0.50 +0.3 4,247,604 - BWI76_RS20265 0.50 +0.1 4,247,604 - BWI76_RS20265 0.50 +0.3 4,247,604 - BWI76_RS20265 0.50 +0.0 4,247,604 - BWI76_RS20265 0.50 -1.0 4,247,605 - BWI76_RS20265 0.50 +0.1 4,247,605 - BWI76_RS20265 0.50 -0.0 4,247,613 + BWI76_RS20265 0.52 +0.3 4,247,639 + BWI76_RS20265 0.57 -0.2 4,247,656 + BWI76_RS20265 0.61 +0.3 4,247,664 - BWI76_RS20265 0.63 -0.1 4,247,675 + +1.0 4,247,683 - BWI76_RS20265 0.67 +0.3 4,247,683 - BWI76_RS20265 0.67 -0.4 4,248,317 + BWI76_RS20270 0.25 -3.6 4,248,402 - BWI76_RS20270 0.33 -1.9 4,248,647 - BWI76_RS20270 0.57 -2.2 4,248,689 + BWI76_RS20270 0.61 -4.1 4,248,698 - BWI76_RS20270 0.62 -1.7 4,248,726 - BWI76_RS20270 0.65 -1.9 4,248,732 + BWI76_RS20270 0.65 -0.4 4,248,845 + BWI76_RS20270 0.77 -1.8 4,248,908 + +0.6 4,249,402 - BWI76_RS20275 0.57 +1.3 4,249,673 - +0.1 4,249,776 + BWI76_RS20280 0.14 -1.3 4,249,885 - BWI76_RS20280 0.34 +0.4 4,249,922 + BWI76_RS20280 0.40 -0.2
Or see this region's nucleotide sequence