Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20170

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20165 and BWI76_RS20170 are separated by 32 nucleotidesBWI76_RS20170 and BWI76_RS20175 overlap by 4 nucleotidesBWI76_RS20175 and BWI76_RS20180 are separated by 2 nucleotides BWI76_RS20165: BWI76_RS20165 - NADH-quinone oxidoreductase subunit G, at 4,224,371 to 4,227,097 _RS20165 BWI76_RS20170: BWI76_RS20170 - NADH-quinone oxidoreductase subunit F, at 4,227,130 to 4,228,467 _RS20170 BWI76_RS20175: BWI76_RS20175 - NADH-quinone oxidoreductase subunit E, at 4,228,464 to 4,228,964 _RS20175 BWI76_RS20180: BWI76_RS20180 - NADH-quinone oxidoreductase subunit C/D, at 4,228,967 to 4,230,763 _RS20180 Position (kb) 4227 4228 4229Strain fitness (log2 ratio) -3 -2 -1 0 1at 4226.418 kb on - strand, within BWI76_RS20165at 4226.753 kb on - strand, within BWI76_RS20165at 4226.753 kb on - strand, within BWI76_RS20165at 4226.908 kb on - strandat 4227.802 kb on - strand, within BWI76_RS20170at 4227.826 kb on + strand, within BWI76_RS20170at 4227.944 kb on + strand, within BWI76_RS20170at 4228.008 kb on - strand, within BWI76_RS20170at 4228.295 kb on - strand, within BWI76_RS20170at 4228.438 kb on + strandat 4228.521 kb on - strand, within BWI76_RS20175

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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4,226,418 - BWI76_RS20165 0.75 -1.7
4,226,753 - BWI76_RS20165 0.87 -2.4
4,226,753 - BWI76_RS20165 0.87 -1.8
4,226,908 - -0.8
4,227,802 - BWI76_RS20170 0.50 -1.0
4,227,826 + BWI76_RS20170 0.52 -3.3
4,227,944 + BWI76_RS20170 0.61 -0.5
4,228,008 - BWI76_RS20170 0.66 -3.5
4,228,295 - BWI76_RS20170 0.87 -2.0
4,228,438 + -2.1
4,228,521 - BWI76_RS20175 0.11 -0.6

Or see this region's nucleotide sequence