Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19510 and BWI76_RS19515 are separated by 194 nucleotides BWI76_RS19515 and BWI76_RS19520 are separated by 97 nucleotides BWI76_RS19520 and BWI76_RS19525 are separated by 138 nucleotides
BWI76_RS19510: BWI76_RS19510 - beta-glucosidase, at 4,076,273 to 4,078,570
_RS19510
BWI76_RS19515: BWI76_RS19515 - D-lactate dehydrogenase (cytochrome c-553) (EC 1.1.2.5) <small>(from data)</small>, at 4,078,765 to 4,080,507
_RS19515
BWI76_RS19520: BWI76_RS19520 - acetyltransferase GCN5, at 4,080,605 to 4,081,159
_RS19520
BWI76_RS19525: BWI76_RS19525 - D-alanyl-D-alanine endopeptidase, at 4,081,298 to 4,082,245
_RS19525
Position (kb) 4078
4079
4080
4081 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4077.902 kb on + strand, within BWI76_RS19510 at 4077.954 kb on - strand, within BWI76_RS19510 at 4077.990 kb on - strand, within BWI76_RS19510 at 4078.195 kb on + strand, within BWI76_RS19510 at 4078.289 kb on + strand, within BWI76_RS19510 at 4078.348 kb on - strand at 4078.804 kb on + strand at 4078.893 kb on - strand at 4078.934 kb on - strand at 4079.032 kb on + strand, within BWI76_RS19515 at 4079.114 kb on - strand, within BWI76_RS19515 at 4079.978 kb on - strand, within BWI76_RS19515 at 4080.137 kb on + strand, within BWI76_RS19515 at 4080.177 kb on + strand, within BWI76_RS19515 at 4080.333 kb on + strand at 4080.371 kb on - strand at 4080.419 kb on + strand at 4080.523 kb on + strand at 4080.542 kb on + strand at 4080.550 kb on - strand at 4080.699 kb on - strand, within BWI76_RS19520 at 4080.728 kb on - strand, within BWI76_RS19520 at 4080.884 kb on - strand, within BWI76_RS19520
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,077,902 + BWI76_RS19510 0.71 +0.2 4,077,954 - BWI76_RS19510 0.73 -0.7 4,077,990 - BWI76_RS19510 0.75 -0.5 4,078,195 + BWI76_RS19510 0.84 -0.0 4,078,289 + BWI76_RS19510 0.88 -0.9 4,078,348 - +2.3 4,078,804 + -2.5 4,078,893 - -2.0 4,078,934 - -2.7 4,079,032 + BWI76_RS19515 0.15 -1.6 4,079,114 - BWI76_RS19515 0.20 -1.0 4,079,978 - BWI76_RS19515 0.70 -3.3 4,080,137 + BWI76_RS19515 0.79 -1.2 4,080,177 + BWI76_RS19515 0.81 -2.0 4,080,333 + -3.0 4,080,371 - -2.2 4,080,419 + -0.4 4,080,523 + -0.1 4,080,542 + -1.4 4,080,550 - -1.6 4,080,699 - BWI76_RS19520 0.17 -0.1 4,080,728 - BWI76_RS19520 0.22 +0.3 4,080,884 - BWI76_RS19520 0.50 -0.1
Or see this region's nucleotide sequence