Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18110

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18105 and BWI76_RS18110 are separated by 355 nucleotidesBWI76_RS18110 and BWI76_RS18115 are separated by 125 nucleotides BWI76_RS18105: BWI76_RS18105 - glucose-6-phosphate dehydrogenase, at 3,761,887 to 3,763,362 _RS18105 BWI76_RS18110: BWI76_RS18110 - transcriptional regulator HexR, at 3,763,718 to 3,764,587 _RS18110 BWI76_RS18115: BWI76_RS18115 - pyruvate kinase, at 3,764,713 to 3,766,155 _RS18115 Position (kb) 3763 3764 3765Strain fitness (log2 ratio) -2 -1 0 1at 3763.428 kb on + strandat 3763.501 kb on - strandat 3763.519 kb on - strandat 3763.874 kb on - strand, within BWI76_RS18110at 3764.089 kb on + strand, within BWI76_RS18110at 3764.255 kb on - strand, within BWI76_RS18110at 3764.380 kb on + strand, within BWI76_RS18110at 3764.521 kb on + strandat 3764.529 kb on - strandat 3764.541 kb on - strandat 3764.617 kb on - strandat 3764.817 kb on - strandat 3764.866 kb on + strand, within BWI76_RS18115at 3764.874 kb on - strand, within BWI76_RS18115at 3765.015 kb on - strand, within BWI76_RS18115at 3765.580 kb on + strand, within BWI76_RS18115

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,763,428 + -1.8
3,763,501 - +0.2
3,763,519 - -0.2
3,763,874 - BWI76_RS18110 0.18 -1.0
3,764,089 + BWI76_RS18110 0.43 -1.5
3,764,255 - BWI76_RS18110 0.62 -1.1
3,764,380 + BWI76_RS18110 0.76 -2.7
3,764,521 + -1.5
3,764,529 - +1.0
3,764,541 - -1.2
3,764,617 - -0.6
3,764,817 - -0.8
3,764,866 + BWI76_RS18115 0.11 -0.4
3,764,874 - BWI76_RS18115 0.11 -0.0
3,765,015 - BWI76_RS18115 0.21 -0.1
3,765,580 + BWI76_RS18115 0.60 +0.1

Or see this region's nucleotide sequence