Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18090 and BWI76_RS18095 are separated by 45 nucleotides BWI76_RS18095 and BWI76_RS18100 are separated by 37 nucleotides BWI76_RS18100 and BWI76_RS18105 are separated by 220 nucleotides
BWI76_RS18090: BWI76_RS18090 - phosphoribosylglycinamide formyltransferase 2, at 3,757,952 to 3,759,130
_RS18090
BWI76_RS18095: BWI76_RS18095 - ketohydroxyglutarate aldolase, at 3,759,176 to 3,759,817
_RS18095
BWI76_RS18100: BWI76_RS18100 - phosphogluconate dehydratase, at 3,759,855 to 3,761,666
_RS18100
BWI76_RS18105: BWI76_RS18105 - glucose-6-phosphate dehydrogenase, at 3,761,887 to 3,763,362
_RS18105
Position (kb) 3759
3760
3761
3762 Strain fitness (log2 ratio) -1
0
1 at 3759.581 kb on - strand, within BWI76_RS18095 at 3759.884 kb on - strand at 3759.884 kb on - strand at 3759.886 kb on + strand at 3760.434 kb on + strand, within BWI76_RS18100 at 3760.477 kb on + strand, within BWI76_RS18100 at 3760.485 kb on - strand, within BWI76_RS18100 at 3760.500 kb on - strand, within BWI76_RS18100 at 3760.749 kb on - strand, within BWI76_RS18100 at 3760.761 kb on - strand, within BWI76_RS18100 at 3760.847 kb on + strand, within BWI76_RS18100 at 3761.210 kb on + strand, within BWI76_RS18100 at 3761.210 kb on + strand, within BWI76_RS18100 at 3761.210 kb on + strand, within BWI76_RS18100 at 3761.210 kb on + strand, within BWI76_RS18100 at 3761.374 kb on + strand, within BWI76_RS18100 at 3761.379 kb on + strand, within BWI76_RS18100 at 3761.387 kb on - strand, within BWI76_RS18100 at 3761.572 kb on + strand at 3761.572 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,759,581 - BWI76_RS18095 0.63 -0.5 3,759,884 - +0.1 3,759,884 - +0.4 3,759,886 + +0.0 3,760,434 + BWI76_RS18100 0.32 -0.1 3,760,477 + BWI76_RS18100 0.34 -0.4 3,760,485 - BWI76_RS18100 0.35 +0.2 3,760,500 - BWI76_RS18100 0.36 -0.1 3,760,749 - BWI76_RS18100 0.49 -0.4 3,760,761 - BWI76_RS18100 0.50 -0.0 3,760,847 + BWI76_RS18100 0.55 -0.4 3,761,210 + BWI76_RS18100 0.75 +0.3 3,761,210 + BWI76_RS18100 0.75 +0.2 3,761,210 + BWI76_RS18100 0.75 +0.1 3,761,210 + BWI76_RS18100 0.75 -1.3 3,761,374 + BWI76_RS18100 0.84 -0.1 3,761,379 + BWI76_RS18100 0.84 -0.7 3,761,387 - BWI76_RS18100 0.85 +0.1 3,761,572 + -0.6 3,761,572 + -0.0
Or see this region's nucleotide sequence