Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15955

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15945 and BWI76_RS15950 overlap by 48 nucleotidesBWI76_RS15950 and BWI76_RS15955 are separated by 127 nucleotidesBWI76_RS15955 and BWI76_RS15960 are separated by 133 nucleotides BWI76_RS15945: BWI76_RS15945 - voltage-gated ClC-type chloride channel ClcB, at 3,306,971 to 3,308,266 _RS15945 BWI76_RS15950: BWI76_RS15950 - dethiobiotin synthase, at 3,308,219 to 3,308,914 _RS15950 BWI76_RS15955: BWI76_RS15955 - transcriptional regulator, at 3,309,042 to 3,310,262 _RS15955 BWI76_RS15960: BWI76_RS15960 - LysR family transcriptional regulator, at 3,310,396 to 3,311,289 _RS15960 Position (kb) 3309 3310 3311Strain fitness (log2 ratio) -2 -1 0 1 2at 3308.117 kb on - strand, within BWI76_RS15945at 3308.662 kb on - strand, within BWI76_RS15950at 3308.806 kb on + strand, within BWI76_RS15950at 3308.846 kb on - strandat 3309.001 kb on + strandat 3309.088 kb on + strandat 3309.088 kb on + strandat 3309.093 kb on + strandat 3309.101 kb on - strandat 3309.235 kb on - strand, within BWI76_RS15955at 3309.236 kb on - strand, within BWI76_RS15955at 3309.514 kb on + strand, within BWI76_RS15955at 3309.600 kb on + strand, within BWI76_RS15955at 3309.970 kb on - strand, within BWI76_RS15955at 3310.318 kb on - strandat 3310.856 kb on - strand, within BWI76_RS15960at 3310.865 kb on + strand, within BWI76_RS15960at 3310.865 kb on + strand, within BWI76_RS15960at 3310.923 kb on + strand, within BWI76_RS15960at 3311.214 kb on - strandat 3311.239 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,308,117 - BWI76_RS15945 0.88 -0.4
3,308,662 - BWI76_RS15950 0.64 -0.5
3,308,806 + BWI76_RS15950 0.84 +0.2
3,308,846 - +0.5
3,309,001 + +0.0
3,309,088 + -1.4
3,309,088 + -2.1
3,309,093 + -0.9
3,309,101 - -0.9
3,309,235 - BWI76_RS15955 0.16 -1.3
3,309,236 - BWI76_RS15955 0.16 -0.7
3,309,514 + BWI76_RS15955 0.39 -1.1
3,309,600 + BWI76_RS15955 0.46 -1.5
3,309,970 - BWI76_RS15955 0.76 -1.6
3,310,318 - +0.4
3,310,856 - BWI76_RS15960 0.51 +0.3
3,310,865 + BWI76_RS15960 0.52 +0.9
3,310,865 + BWI76_RS15960 0.52 +2.0
3,310,923 + BWI76_RS15960 0.59 -0.1
3,311,214 - -0.6
3,311,239 + +0.6

Or see this region's nucleotide sequence