Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15945 and BWI76_RS15950 overlap by 48 nucleotides BWI76_RS15950 and BWI76_RS15955 are separated by 127 nucleotides BWI76_RS15955 and BWI76_RS15960 are separated by 133 nucleotides
BWI76_RS15945: BWI76_RS15945 - voltage-gated ClC-type chloride channel ClcB, at 3,306,971 to 3,308,266
_RS15945
BWI76_RS15950: BWI76_RS15950 - dethiobiotin synthase, at 3,308,219 to 3,308,914
_RS15950
BWI76_RS15955: BWI76_RS15955 - transcriptional regulator, at 3,309,042 to 3,310,262
_RS15955
BWI76_RS15960: BWI76_RS15960 - LysR family transcriptional regulator, at 3,310,396 to 3,311,289
_RS15960
Position (kb)
3309
3310
3311 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3308.117 kb on - strand, within BWI76_RS15945 at 3308.662 kb on - strand, within BWI76_RS15950 at 3308.806 kb on + strand, within BWI76_RS15950 at 3308.846 kb on - strand at 3309.001 kb on + strand at 3309.088 kb on + strand at 3309.088 kb on + strand at 3309.093 kb on + strand at 3309.101 kb on - strand at 3309.235 kb on - strand, within BWI76_RS15955 at 3309.236 kb on - strand, within BWI76_RS15955 at 3309.514 kb on + strand, within BWI76_RS15955 at 3309.600 kb on + strand, within BWI76_RS15955 at 3309.970 kb on - strand, within BWI76_RS15955 at 3310.318 kb on - strand at 3310.856 kb on - strand, within BWI76_RS15960 at 3310.865 kb on + strand, within BWI76_RS15960 at 3310.865 kb on + strand, within BWI76_RS15960 at 3310.923 kb on + strand, within BWI76_RS15960 at 3311.214 kb on - strand at 3311.239 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,308,117 - BWI76_RS15945 0.88 -0.4 3,308,662 - BWI76_RS15950 0.64 -0.5 3,308,806 + BWI76_RS15950 0.84 +0.2 3,308,846 - +0.5 3,309,001 + +0.0 3,309,088 + -1.4 3,309,088 + -2.1 3,309,093 + -0.9 3,309,101 - -0.9 3,309,235 - BWI76_RS15955 0.16 -1.3 3,309,236 - BWI76_RS15955 0.16 -0.7 3,309,514 + BWI76_RS15955 0.39 -1.1 3,309,600 + BWI76_RS15955 0.46 -1.5 3,309,970 - BWI76_RS15955 0.76 -1.6 3,310,318 - +0.4 3,310,856 - BWI76_RS15960 0.51 +0.3 3,310,865 + BWI76_RS15960 0.52 +0.9 3,310,865 + BWI76_RS15960 0.52 +2.0 3,310,923 + BWI76_RS15960 0.59 -0.1 3,311,214 - -0.6 3,311,239 + +0.6
Or see this region's nucleotide sequence