Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13750

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13740 and BWI76_RS13745 are separated by 11 nucleotidesBWI76_RS13745 and BWI76_RS13750 overlap by 8 nucleotidesBWI76_RS13750 and BWI76_RS13755 are separated by 41 nucleotidesBWI76_RS13755 and BWI76_RS13760 overlap by 1 nucleotidesBWI76_RS13760 and BWI76_RS13765 are separated by 356 nucleotides BWI76_RS13740: BWI76_RS13740 - formate dehydrogenase-N subunit alpha, at 2,864,974 to 2,867,385 _RS13740 BWI76_RS13745: BWI76_RS13745 - formate dehydrogenase subunit beta, at 2,867,397 to 2,868,281 _RS13745 BWI76_RS13750: BWI76_RS13750 - formate dehydrogenase, at 2,868,274 to 2,868,930 _RS13750 BWI76_RS13755: BWI76_RS13755 - hypothetical protein, at 2,868,972 to 2,869,295 _RS13755 BWI76_RS13760: BWI76_RS13760 - hypothetical protein, at 2,869,295 to 2,869,483 _RS13760 BWI76_RS13765: BWI76_RS13765 - MFS transporter AraJ, at 2,869,840 to 2,870,991 _RS13765 Position (kb) 2868 2869Strain fitness (log2 ratio) -2 -1 0 1 2at 2867.298 kb on - strandat 2867.372 kb on - strandat 2867.449 kb on + strandat 2867.537 kb on + strand, within BWI76_RS13745at 2867.545 kb on - strand, within BWI76_RS13745at 2867.589 kb on - strand, within BWI76_RS13745at 2868.041 kb on + strand, within BWI76_RS13745at 2868.076 kb on + strand, within BWI76_RS13745at 2868.094 kb on + strand, within BWI76_RS13745at 2868.114 kb on - strand, within BWI76_RS13745at 2868.358 kb on - strand, within BWI76_RS13750at 2868.403 kb on + strand, within BWI76_RS13750at 2868.411 kb on - strand, within BWI76_RS13750at 2868.556 kb on - strand, within BWI76_RS13750at 2868.573 kb on + strand, within BWI76_RS13750at 2868.573 kb on + strand, within BWI76_RS13750at 2868.573 kb on + strand, within BWI76_RS13750at 2868.654 kb on + strand, within BWI76_RS13750at 2868.711 kb on + strand, within BWI76_RS13750at 2868.719 kb on + strand, within BWI76_RS13750at 2868.719 kb on + strand, within BWI76_RS13750at 2868.824 kb on - strand, within BWI76_RS13750at 2868.827 kb on + strand, within BWI76_RS13750at 2868.827 kb on + strand, within BWI76_RS13750at 2868.830 kb on - strand, within BWI76_RS13750at 2868.865 kb on - strandat 2868.883 kb on + strandat 2868.886 kb on - strandat 2868.931 kb on + strandat 2868.960 kb on + strandat 2868.968 kb on - strandat 2868.970 kb on + strandat 2868.978 kb on - strandat 2869.189 kb on - strand, within BWI76_RS13755at 2869.191 kb on + strand, within BWI76_RS13755at 2869.264 kb on + strandat 2869.265 kb on + strandat 2869.293 kb on + strandat 2869.303 kb on + strandat 2869.310 kb on + strandat 2869.310 kb on - strandat 2869.387 kb on - strand, within BWI76_RS13760at 2869.392 kb on - strandat 2869.393 kb on + strand, within BWI76_RS13760at 2869.435 kb on - strandat 2869.460 kb on + strand, within BWI76_RS13760at 2869.468 kb on - strandat 2869.503 kb on - strandat 2869.549 kb on + strandat 2869.549 kb on + strandat 2869.549 kb on + strandat 2869.554 kb on + strandat 2869.557 kb on - strandat 2869.562 kb on - strandat 2869.581 kb on - strandat 2869.656 kb on + strandat 2869.661 kb on + strandat 2869.663 kb on + strandat 2869.664 kb on - strandat 2869.666 kb on + strandat 2869.669 kb on - strandat 2869.669 kb on - strandat 2869.679 kb on - strandat 2869.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,867,298 - -0.2
2,867,372 - +0.0
2,867,449 + -0.8
2,867,537 + BWI76_RS13745 0.16 +1.4
2,867,545 - BWI76_RS13745 0.17 -1.2
2,867,589 - BWI76_RS13745 0.22 -0.5
2,868,041 + BWI76_RS13745 0.73 -0.3
2,868,076 + BWI76_RS13745 0.77 -0.2
2,868,094 + BWI76_RS13745 0.79 +0.1
2,868,114 - BWI76_RS13745 0.81 +0.6
2,868,358 - BWI76_RS13750 0.13 +0.9
2,868,403 + BWI76_RS13750 0.20 +0.2
2,868,411 - BWI76_RS13750 0.21 -0.3
2,868,556 - BWI76_RS13750 0.43 -0.3
2,868,573 + BWI76_RS13750 0.46 +0.1
2,868,573 + BWI76_RS13750 0.46 +1.1
2,868,573 + BWI76_RS13750 0.46 +0.1
2,868,654 + BWI76_RS13750 0.58 -0.3
2,868,711 + BWI76_RS13750 0.67 -0.1
2,868,719 + BWI76_RS13750 0.68 +0.4
2,868,719 + BWI76_RS13750 0.68 +0.6
2,868,824 - BWI76_RS13750 0.84 -0.3
2,868,827 + BWI76_RS13750 0.84 -1.2
2,868,827 + BWI76_RS13750 0.84 -0.9
2,868,830 - BWI76_RS13750 0.85 -0.6
2,868,865 - +0.4
2,868,883 + -0.4
2,868,886 - +0.4
2,868,931 + -0.6
2,868,960 + -0.6
2,868,968 - +0.8
2,868,970 + -0.9
2,868,978 - +0.4
2,869,189 - BWI76_RS13755 0.67 +0.0
2,869,191 + BWI76_RS13755 0.68 +0.0
2,869,264 + +0.0
2,869,265 + -1.0
2,869,293 + -0.6
2,869,303 + +0.5
2,869,310 + +0.8
2,869,310 - +0.4
2,869,387 - BWI76_RS13760 0.49 -0.2
2,869,392 - +2.0
2,869,393 + BWI76_RS13760 0.52 -0.5
2,869,435 - +0.8
2,869,460 + BWI76_RS13760 0.87 -0.2
2,869,468 - -0.3
2,869,503 - +1.8
2,869,549 + +0.1
2,869,549 + -1.0
2,869,549 + -2.3
2,869,554 + -0.6
2,869,557 - +0.7
2,869,562 - -0.4
2,869,581 - +1.4
2,869,656 + +0.5
2,869,661 + -2.1
2,869,663 + -0.3
2,869,664 - -1.1
2,869,666 + -1.0
2,869,669 - -1.6
2,869,669 - -0.4
2,869,679 - -0.5
2,869,679 - -0.8

Or see this region's nucleotide sequence