Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13740 and BWI76_RS13745 are separated by 11 nucleotides BWI76_RS13745 and BWI76_RS13750 overlap by 8 nucleotides BWI76_RS13750 and BWI76_RS13755 are separated by 41 nucleotides BWI76_RS13755 and BWI76_RS13760 overlap by 1 nucleotides BWI76_RS13760 and BWI76_RS13765 are separated by 356 nucleotides
BWI76_RS13740: BWI76_RS13740 - formate dehydrogenase-N subunit alpha, at 2,864,974 to 2,867,385
_RS13740
BWI76_RS13745: BWI76_RS13745 - formate dehydrogenase subunit beta, at 2,867,397 to 2,868,281
_RS13745
BWI76_RS13750: BWI76_RS13750 - formate dehydrogenase, at 2,868,274 to 2,868,930
_RS13750
BWI76_RS13755: BWI76_RS13755 - hypothetical protein, at 2,868,972 to 2,869,295
_RS13755
BWI76_RS13760: BWI76_RS13760 - hypothetical protein, at 2,869,295 to 2,869,483
_RS13760
BWI76_RS13765: BWI76_RS13765 - MFS transporter AraJ, at 2,869,840 to 2,870,991
_RS13765
Position (kb)
2868
2869 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2867.298 kb on - strand at 2867.372 kb on - strand at 2867.449 kb on + strand at 2867.537 kb on + strand, within BWI76_RS13745 at 2867.545 kb on - strand, within BWI76_RS13745 at 2867.589 kb on - strand, within BWI76_RS13745 at 2868.041 kb on + strand, within BWI76_RS13745 at 2868.076 kb on + strand, within BWI76_RS13745 at 2868.094 kb on + strand, within BWI76_RS13745 at 2868.114 kb on - strand, within BWI76_RS13745 at 2868.358 kb on - strand, within BWI76_RS13750 at 2868.403 kb on + strand, within BWI76_RS13750 at 2868.411 kb on - strand, within BWI76_RS13750 at 2868.556 kb on - strand, within BWI76_RS13750 at 2868.573 kb on + strand, within BWI76_RS13750 at 2868.573 kb on + strand, within BWI76_RS13750 at 2868.573 kb on + strand, within BWI76_RS13750 at 2868.654 kb on + strand, within BWI76_RS13750 at 2868.711 kb on + strand, within BWI76_RS13750 at 2868.719 kb on + strand, within BWI76_RS13750 at 2868.719 kb on + strand, within BWI76_RS13750 at 2868.824 kb on - strand, within BWI76_RS13750 at 2868.827 kb on + strand, within BWI76_RS13750 at 2868.827 kb on + strand, within BWI76_RS13750 at 2868.830 kb on - strand, within BWI76_RS13750 at 2868.865 kb on - strand at 2868.883 kb on + strand at 2868.886 kb on - strand at 2868.931 kb on + strand at 2868.960 kb on + strand at 2868.968 kb on - strand at 2868.970 kb on + strand at 2868.978 kb on - strand at 2869.189 kb on - strand, within BWI76_RS13755 at 2869.191 kb on + strand, within BWI76_RS13755 at 2869.264 kb on + strand at 2869.265 kb on + strand at 2869.293 kb on + strand at 2869.303 kb on + strand at 2869.310 kb on + strand at 2869.310 kb on - strand at 2869.387 kb on - strand, within BWI76_RS13760 at 2869.392 kb on - strand at 2869.393 kb on + strand, within BWI76_RS13760 at 2869.435 kb on - strand at 2869.460 kb on + strand, within BWI76_RS13760 at 2869.468 kb on - strand at 2869.503 kb on - strand at 2869.549 kb on + strand at 2869.549 kb on + strand at 2869.549 kb on + strand at 2869.554 kb on + strand at 2869.557 kb on - strand at 2869.562 kb on - strand at 2869.581 kb on - strand at 2869.656 kb on + strand at 2869.661 kb on + strand at 2869.663 kb on + strand at 2869.664 kb on - strand at 2869.666 kb on + strand at 2869.669 kb on - strand at 2869.669 kb on - strand at 2869.679 kb on - strand at 2869.679 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 2,867,298 - -0.2 2,867,372 - +0.0 2,867,449 + -0.8 2,867,537 + BWI76_RS13745 0.16 +1.4 2,867,545 - BWI76_RS13745 0.17 -1.2 2,867,589 - BWI76_RS13745 0.22 -0.5 2,868,041 + BWI76_RS13745 0.73 -0.3 2,868,076 + BWI76_RS13745 0.77 -0.2 2,868,094 + BWI76_RS13745 0.79 +0.1 2,868,114 - BWI76_RS13745 0.81 +0.6 2,868,358 - BWI76_RS13750 0.13 +0.9 2,868,403 + BWI76_RS13750 0.20 +0.2 2,868,411 - BWI76_RS13750 0.21 -0.3 2,868,556 - BWI76_RS13750 0.43 -0.3 2,868,573 + BWI76_RS13750 0.46 +0.1 2,868,573 + BWI76_RS13750 0.46 +1.1 2,868,573 + BWI76_RS13750 0.46 +0.1 2,868,654 + BWI76_RS13750 0.58 -0.3 2,868,711 + BWI76_RS13750 0.67 -0.1 2,868,719 + BWI76_RS13750 0.68 +0.4 2,868,719 + BWI76_RS13750 0.68 +0.6 2,868,824 - BWI76_RS13750 0.84 -0.3 2,868,827 + BWI76_RS13750 0.84 -1.2 2,868,827 + BWI76_RS13750 0.84 -0.9 2,868,830 - BWI76_RS13750 0.85 -0.6 2,868,865 - +0.4 2,868,883 + -0.4 2,868,886 - +0.4 2,868,931 + -0.6 2,868,960 + -0.6 2,868,968 - +0.8 2,868,970 + -0.9 2,868,978 - +0.4 2,869,189 - BWI76_RS13755 0.67 +0.0 2,869,191 + BWI76_RS13755 0.68 +0.0 2,869,264 + +0.0 2,869,265 + -1.0 2,869,293 + -0.6 2,869,303 + +0.5 2,869,310 + +0.8 2,869,310 - +0.4 2,869,387 - BWI76_RS13760 0.49 -0.2 2,869,392 - +2.0 2,869,393 + BWI76_RS13760 0.52 -0.5 2,869,435 - +0.8 2,869,460 + BWI76_RS13760 0.87 -0.2 2,869,468 - -0.3 2,869,503 - +1.8 2,869,549 + +0.1 2,869,549 + -1.0 2,869,549 + -2.3 2,869,554 + -0.6 2,869,557 - +0.7 2,869,562 - -0.4 2,869,581 - +1.4 2,869,656 + +0.5 2,869,661 + -2.1 2,869,663 + -0.3 2,869,664 - -1.1 2,869,666 + -1.0 2,869,669 - -1.6 2,869,669 - -0.4 2,869,679 - -0.5 2,869,679 - -0.8
Or see this region's nucleotide sequence