Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09970

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09960 and BWI76_RS09965 are separated by 185 nucleotidesBWI76_RS09965 and BWI76_RS09970 are separated by 95 nucleotidesBWI76_RS09970 and BWI76_RS09975 are separated by 353 nucleotides BWI76_RS09960: BWI76_RS09960 - Lon protease, at 2,095,731 to 2,097,488 _RS09960 BWI76_RS09965: BWI76_RS09965 - macrodomain Ter protein, at 2,097,674 to 2,098,126 _RS09965 BWI76_RS09970: BWI76_RS09970 - porin OmpA, at 2,098,222 to 2,099,292 _RS09970 BWI76_RS09975: BWI76_RS09975 - cell division inhibitor SulA, at 2,099,646 to 2,100,155 _RS09975 Position (kb) 2098 2099 2100Strain fitness (log2 ratio) -2 -1 0 1at 2098.178 kb on - strandat 2098.290 kb on - strandat 2098.489 kb on - strand, within BWI76_RS09970at 2098.743 kb on - strand, within BWI76_RS09970at 2099.339 kb on - strandat 2099.339 kb on - strandat 2099.439 kb on - strandat 2099.723 kb on + strand, within BWI76_RS09975at 2099.724 kb on + strand, within BWI76_RS09975at 2099.725 kb on + strand, within BWI76_RS09975at 2099.797 kb on - strand, within BWI76_RS09975at 2099.893 kb on + strand, within BWI76_RS09975at 2099.893 kb on + strand, within BWI76_RS09975at 2099.901 kb on - strand, within BWI76_RS09975at 2100.118 kb on - strandat 2100.153 kb on - strandat 2100.191 kb on + strandat 2100.206 kb on + strandat 2100.281 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,098,178 - -0.1
2,098,290 - +0.5
2,098,489 - BWI76_RS09970 0.25 -1.0
2,098,743 - BWI76_RS09970 0.49 -2.1
2,099,339 - +0.0
2,099,339 - +0.2
2,099,439 - -1.9
2,099,723 + BWI76_RS09975 0.15 -0.6
2,099,724 + BWI76_RS09975 0.15 +0.1
2,099,725 + BWI76_RS09975 0.15 +1.2
2,099,797 - BWI76_RS09975 0.30 +0.3
2,099,893 + BWI76_RS09975 0.48 -0.2
2,099,893 + BWI76_RS09975 0.48 -0.1
2,099,901 - BWI76_RS09975 0.50 +0.3
2,100,118 - -0.3
2,100,153 - -1.0
2,100,191 + -0.2
2,100,206 + +0.8
2,100,281 + +0.9

Or see this region's nucleotide sequence