Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06475 and BWI76_RS06480 are separated by 11 nucleotides BWI76_RS06480 and BWI76_RS06485 overlap by 1 nucleotides BWI76_RS06485 and BWI76_RS06490 overlap by 11 nucleotides BWI76_RS06490 and BWI76_RS06495 are separated by 19 nucleotides
BWI76_RS06475: BWI76_RS06475 - protoheme IX farnesyltransferase, at 1,360,537 to 1,361,424
_RS06475
BWI76_RS06480: BWI76_RS06480 - cytochrome o ubiquinol oxidase subunit IV, at 1,361,436 to 1,361,765
_RS06480
BWI76_RS06485: BWI76_RS06485 - cytochrome o ubiquinol oxidase subunit III, at 1,361,765 to 1,362,376
_RS06485
BWI76_RS06490: BWI76_RS06490 - cytochrome ubiquinol oxidase subunit I, at 1,362,366 to 1,364,357
_RS06490
BWI76_RS06495: BWI76_RS06495 - cytochrome ubiquinol oxidase subunit II, at 1,364,377 to 1,365,324
_RS06495
Position (kb)
1362
1363
1364
1365 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1361.591 kb on - strand, within BWI76_RS06480 at 1361.856 kb on - strand, within BWI76_RS06485 at 1361.946 kb on + strand, within BWI76_RS06485 at 1362.441 kb on - strand at 1362.686 kb on - strand, within BWI76_RS06490 at 1363.047 kb on + strand, within BWI76_RS06490 at 1363.073 kb on - strand, within BWI76_RS06490 at 1363.232 kb on - strand, within BWI76_RS06490 at 1363.387 kb on + strand, within BWI76_RS06490 at 1363.759 kb on - strand at 1364.100 kb on + strand, within BWI76_RS06490 at 1364.131 kb on - strand, within BWI76_RS06490 at 1364.398 kb on + strand at 1364.460 kb on - strand at 1364.469 kb on - strand at 1364.831 kb on + strand at 1364.979 kb on + strand, within BWI76_RS06495 at 1364.979 kb on + strand, within BWI76_RS06495 at 1365.012 kb on - strand, within BWI76_RS06495 at 1365.036 kb on - strand, within BWI76_RS06495 at 1365.057 kb on - strand, within BWI76_RS06495 at 1365.072 kb on + strand, within BWI76_RS06495 at 1365.080 kb on - strand, within BWI76_RS06495 at 1365.086 kb on + strand, within BWI76_RS06495 at 1365.090 kb on - strand, within BWI76_RS06495 at 1365.090 kb on - strand, within BWI76_RS06495 at 1365.109 kb on - strand, within BWI76_RS06495 at 1365.148 kb on - strand, within BWI76_RS06495 at 1365.153 kb on - strand, within BWI76_RS06495 at 1365.175 kb on - strand, within BWI76_RS06495 at 1365.177 kb on + strand, within BWI76_RS06495 at 1365.200 kb on - strand, within BWI76_RS06495 at 1365.210 kb on - strand, within BWI76_RS06495 at 1365.212 kb on + strand, within BWI76_RS06495 at 1365.220 kb on - strand, within BWI76_RS06495 at 1365.230 kb on + strand at 1365.232 kb on - strand at 1365.233 kb on - strand at 1365.259 kb on + strand at 1365.259 kb on + strand at 1365.259 kb on + strand at 1365.259 kb on + strand at 1365.259 kb on + strand at 1365.259 kb on + strand at 1365.259 kb on + strand at 1365.259 kb on + strand at 1365.259 kb on + strand at 1365.261 kb on + strand at 1365.261 kb on + strand at 1365.261 kb on + strand at 1365.262 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.267 kb on - strand at 1365.269 kb on - strand at 1365.269 kb on - strand at 1365.269 kb on - strand at 1365.269 kb on - strand at 1365.269 kb on - strand at 1365.269 kb on - strand at 1365.356 kb on + strand at 1365.356 kb on + strand at 1365.356 kb on + strand at 1365.356 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,361,591 - BWI76_RS06480 0.47 -2.0 1,361,856 - BWI76_RS06485 0.15 -1.1 1,361,946 + BWI76_RS06485 0.30 -1.7 1,362,441 - +0.0 1,362,686 - BWI76_RS06490 0.16 -1.1 1,363,047 + BWI76_RS06490 0.34 -0.5 1,363,073 - BWI76_RS06490 0.35 -2.0 1,363,232 - BWI76_RS06490 0.43 +0.6 1,363,387 + BWI76_RS06490 0.51 +1.1 1,363,759 - -0.3 1,364,100 + BWI76_RS06490 0.87 -1.8 1,364,131 - BWI76_RS06490 0.89 -1.2 1,364,398 + -1.4 1,364,460 - +0.1 1,364,469 - +0.3 1,364,831 + +0.1 1,364,979 + BWI76_RS06495 0.64 -2.4 1,364,979 + BWI76_RS06495 0.64 -0.9 1,365,012 - BWI76_RS06495 0.67 -2.2 1,365,036 - BWI76_RS06495 0.70 -1.5 1,365,057 - BWI76_RS06495 0.72 +0.1 1,365,072 + BWI76_RS06495 0.73 +0.3 1,365,080 - BWI76_RS06495 0.74 -2.3 1,365,086 + BWI76_RS06495 0.75 -1.8 1,365,090 - BWI76_RS06495 0.75 -2.1 1,365,090 - BWI76_RS06495 0.75 -1.4 1,365,109 - BWI76_RS06495 0.77 -0.3 1,365,148 - BWI76_RS06495 0.81 -1.8 1,365,153 - BWI76_RS06495 0.82 -1.9 1,365,175 - BWI76_RS06495 0.84 -1.5 1,365,177 + BWI76_RS06495 0.84 -1.7 1,365,200 - BWI76_RS06495 0.87 -0.8 1,365,210 - BWI76_RS06495 0.88 -2.2 1,365,212 + BWI76_RS06495 0.88 -0.9 1,365,220 - BWI76_RS06495 0.89 -1.2 1,365,230 + -1.1 1,365,232 - -1.6 1,365,233 - -1.5 1,365,259 + +0.2 1,365,259 + -1.4 1,365,259 + -1.0 1,365,259 + +0.2 1,365,259 + -0.9 1,365,259 + -0.1 1,365,259 + -0.9 1,365,259 + +0.9 1,365,259 + -1.3 1,365,261 + -1.4 1,365,261 + +1.7 1,365,261 + +0.1 1,365,262 - -2.0 1,365,267 - -1.6 1,365,267 - -1.6 1,365,267 - -2.1 1,365,267 - -1.2 1,365,267 - -1.0 1,365,267 - +0.4 1,365,267 - -1.0 1,365,267 - -0.8 1,365,267 - +0.4 1,365,267 - -1.6 1,365,267 - -1.8 1,365,267 - -1.4 1,365,267 - +0.7 1,365,267 - -3.4 1,365,267 - -1.8 1,365,267 - -0.3 1,365,269 - -2.3 1,365,269 - -1.1 1,365,269 - -1.9 1,365,269 - -0.2 1,365,269 - -2.5 1,365,269 - +0.9 1,365,356 + -2.1 1,365,356 + -2.1 1,365,356 + -0.3 1,365,356 + -3.1
Or see this region's nucleotide sequence