Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01375 and BWI76_RS01380 overlap by 1 nucleotides BWI76_RS01380 and BWI76_RS01385 are separated by 41 nucleotides BWI76_RS01385 and BWI76_RS01390 are separated by 11 nucleotides BWI76_RS01390 and BWI76_RS01395 are separated by 387 nucleotides
BWI76_RS01375: BWI76_RS01375 - Xaa-Pro dipeptidase, at 281,018 to 282,349
_RS01375
BWI76_RS01380: BWI76_RS01380 - YigZ family protein, at 282,349 to 282,963
_RS01380
BWI76_RS01385: BWI76_RS01385 - potassium transporter, at 283,005 to 284,456
_RS01385
BWI76_RS01390: BWI76_RS01390 - protoporphyrinogen oxidase, at 284,468 to 285,001
_RS01390
BWI76_RS01395: BWI76_RS01395 - 16S ribosomal RNA, at 285,389 to 286,942
_RS01395
Position (kb) 283
284
285 Strain fitness (log2 ratio) -2
-1
0
1 at 282.032 kb on - strand, within BWI76_RS01375 at 282.032 kb on - strand, within BWI76_RS01375 at 282.076 kb on + strand, within BWI76_RS01375 at 282.095 kb on - strand, within BWI76_RS01375 at 282.095 kb on - strand, within BWI76_RS01375 at 282.099 kb on - strand, within BWI76_RS01375 at 282.100 kb on - strand, within BWI76_RS01375 at 282.220 kb on + strand at 282.230 kb on + strand at 282.479 kb on - strand, within BWI76_RS01380 at 282.591 kb on + strand, within BWI76_RS01380 at 282.719 kb on + strand, within BWI76_RS01380 at 282.720 kb on - strand, within BWI76_RS01380 at 283.237 kb on - strand, within BWI76_RS01385 at 283.264 kb on + strand, within BWI76_RS01385 at 283.908 kb on - strand, within BWI76_RS01385 at 283.931 kb on + strand, within BWI76_RS01385 at 284.107 kb on - strand, within BWI76_RS01385 at 284.314 kb on + strand at 284.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 282,032 - BWI76_RS01375 0.76 +0.1 282,032 - BWI76_RS01375 0.76 -0.0 282,076 + BWI76_RS01375 0.79 +1.0 282,095 - BWI76_RS01375 0.81 -0.6 282,095 - BWI76_RS01375 0.81 +0.4 282,099 - BWI76_RS01375 0.81 -0.1 282,100 - BWI76_RS01375 0.81 +0.4 282,220 + -2.3 282,230 + +0.3 282,479 - BWI76_RS01380 0.21 -0.1 282,591 + BWI76_RS01380 0.39 -0.2 282,719 + BWI76_RS01380 0.60 -0.3 282,720 - BWI76_RS01380 0.60 -0.1 283,237 - BWI76_RS01385 0.16 -1.5 283,264 + BWI76_RS01385 0.18 -0.5 283,908 - BWI76_RS01385 0.62 -0.9 283,931 + BWI76_RS01385 0.64 -1.0 284,107 - BWI76_RS01385 0.76 +0.6 284,314 + -0.9 284,460 - +0.1
Or see this region's nucleotide sequence