Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00985

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00980 and BWI76_RS00985 are separated by 58 nucleotidesBWI76_RS00985 and BWI76_RS00990 are separated by 163 nucleotides BWI76_RS00980: BWI76_RS00980 - PLP-dependent threonine dehydratase, at 200,147 to 201,691 _RS00980 BWI76_RS00985: BWI76_RS00985 - transcriptional regulator IlvY, at 201,750 to 202,640 _RS00985 BWI76_RS00990: BWI76_RS00990 - ketol-acid reductoisomerase, at 202,804 to 204,279 _RS00990 Position (kb) 201 202 203Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 200.792 kb on + strand, within BWI76_RS00980at 200.845 kb on - strand, within BWI76_RS00980at 200.845 kb on - strand, within BWI76_RS00980at 200.869 kb on - strand, within BWI76_RS00980at 200.929 kb on + strand, within BWI76_RS00980at 201.380 kb on - strand, within BWI76_RS00980at 201.454 kb on - strandat 201.505 kb on + strand, within BWI76_RS00980at 201.565 kb on - strandat 201.629 kb on - strandat 201.918 kb on - strand, within BWI76_RS00985at 201.928 kb on - strand, within BWI76_RS00985at 201.974 kb on + strand, within BWI76_RS00985at 202.030 kb on - strand, within BWI76_RS00985at 202.043 kb on - strand, within BWI76_RS00985at 202.101 kb on - strand, within BWI76_RS00985at 202.114 kb on + strand, within BWI76_RS00985at 202.114 kb on + strand, within BWI76_RS00985at 202.177 kb on + strand, within BWI76_RS00985at 202.264 kb on + strand, within BWI76_RS00985at 202.444 kb on + strand, within BWI76_RS00985at 202.515 kb on + strand, within BWI76_RS00985at 202.560 kb on + strandat 202.610 kb on + strandat 202.625 kb on - strandat 202.796 kb on + strandat 202.862 kb on - strandat 202.960 kb on + strand, within BWI76_RS00990at 202.968 kb on - strand, within BWI76_RS00990at 202.971 kb on + strand, within BWI76_RS00990at 202.976 kb on + strand, within BWI76_RS00990at 203.048 kb on - strand, within BWI76_RS00990at 203.182 kb on + strand, within BWI76_RS00990at 203.379 kb on + strand, within BWI76_RS00990at 203.617 kb on - strand, within BWI76_RS00990at 203.617 kb on - strand, within BWI76_RS00990

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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200,792 + BWI76_RS00980 0.42 -2.4
200,845 - BWI76_RS00980 0.45 -1.0
200,845 - BWI76_RS00980 0.45 -2.8
200,869 - BWI76_RS00980 0.47 -2.4
200,929 + BWI76_RS00980 0.51 -2.7
201,380 - BWI76_RS00980 0.80 -0.8
201,454 - +0.8
201,505 + BWI76_RS00980 0.88 -3.2
201,565 - -3.8
201,629 - -1.7
201,918 - BWI76_RS00985 0.19 -1.0
201,928 - BWI76_RS00985 0.20 -2.6
201,974 + BWI76_RS00985 0.25 -1.7
202,030 - BWI76_RS00985 0.31 -3.2
202,043 - BWI76_RS00985 0.33 -4.2
202,101 - BWI76_RS00985 0.39 -2.1
202,114 + BWI76_RS00985 0.41 -3.5
202,114 + BWI76_RS00985 0.41 -1.5
202,177 + BWI76_RS00985 0.48 -4.6
202,264 + BWI76_RS00985 0.58 -1.8
202,444 + BWI76_RS00985 0.78 -3.7
202,515 + BWI76_RS00985 0.86 -2.4
202,560 + -1.1
202,610 + -0.0
202,625 - -2.5
202,796 + -2.7
202,862 - -4.1
202,960 + BWI76_RS00990 0.11 +1.8
202,968 - BWI76_RS00990 0.11 -5.5
202,971 + BWI76_RS00990 0.11 -4.9
202,976 + BWI76_RS00990 0.12 -4.7
203,048 - BWI76_RS00990 0.17 -1.7
203,182 + BWI76_RS00990 0.26 -4.7
203,379 + BWI76_RS00990 0.39 -3.6
203,617 - BWI76_RS00990 0.55 -1.0
203,617 - BWI76_RS00990 0.55 -5.1

Or see this region's nucleotide sequence