Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00960

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS00950 and BWI76_RS00955 are separated by 349 nucleotidesBWI76_RS00955 and BWI76_RS00960 are separated by 139 nucleotidesBWI76_RS00960 and BWI76_RS00965 overlap by 4 nucleotidesBWI76_RS00965 and BWI76_RS00970 are separated by 16 nucleotides BWI76_RS00950: BWI76_RS00950 - ATP-dependent protease, at 193,279 to 194,799 _RS00950 BWI76_RS00955: BWI76_RS00955 - IlvGMEDA operon leader peptide, at 195,149 to 195,247 _RS00955 BWI76_RS00960: BWI76_RS00960 - acetolactate synthase 2 catalytic subunit, at 195,387 to 197,033 _RS00960 BWI76_RS00965: BWI76_RS00965 - acetolactate synthase 2 small subunit, at 197,030 to 197,287 _RS00965 BWI76_RS00970: BWI76_RS00970 - branched chain amino acid aminotransferase, at 197,304 to 198,233 _RS00970 Position (kb) 195 196 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 194.428 kb on + strand, within BWI76_RS00950at 194.517 kb on + strand, within BWI76_RS00950at 194.525 kb on - strand, within BWI76_RS00950at 194.656 kb on - strandat 194.699 kb on - strandat 194.748 kb on + strandat 194.769 kb on - strandat 194.784 kb on - strandat 194.948 kb on + strandat 195.501 kb on + strandat 195.528 kb on - strandat 195.528 kb on - strandat 195.565 kb on - strand, within BWI76_RS00960at 195.595 kb on + strand, within BWI76_RS00960at 195.642 kb on - strandat 195.652 kb on - strand, within BWI76_RS00960at 195.841 kb on - strand, within BWI76_RS00960at 196.023 kb on + strand, within BWI76_RS00960at 196.149 kb on - strand, within BWI76_RS00960at 196.149 kb on - strand, within BWI76_RS00960at 196.541 kb on - strand, within BWI76_RS00960at 196.597 kb on + strandat 196.605 kb on - strand, within BWI76_RS00960at 196.754 kb on + strand, within BWI76_RS00960at 196.869 kb on + strandat 196.933 kb on + strandat 196.941 kb on - strandat 196.973 kb on + strandat 196.981 kb on - strandat 197.236 kb on - strand, within BWI76_RS00965at 197.330 kb on - strandat 197.383 kb on + strandat 197.399 kb on - strand, within BWI76_RS00970at 197.484 kb on + strand, within BWI76_RS00970at 197.484 kb on + strand, within BWI76_RS00970at 197.540 kb on + strand, within BWI76_RS00970at 197.540 kb on + strand, within BWI76_RS00970at 197.686 kb on + strand, within BWI76_RS00970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
194,428 + BWI76_RS00950 0.76 +1.5
194,517 + BWI76_RS00950 0.81 -0.2
194,525 - BWI76_RS00950 0.82 +0.3
194,656 - +0.1
194,699 - +0.8
194,748 + +0.0
194,769 - +0.3
194,784 - -0.6
194,948 + +0.4
195,501 + -0.9
195,528 - +0.3
195,528 - +0.3
195,565 - BWI76_RS00960 0.11 -2.0
195,595 + BWI76_RS00960 0.13 -2.2
195,642 - +1.8
195,652 - BWI76_RS00960 0.16 -0.1
195,841 - BWI76_RS00960 0.28 -1.5
196,023 + BWI76_RS00960 0.39 -0.8
196,149 - BWI76_RS00960 0.46 -0.5
196,149 - BWI76_RS00960 0.46 -0.0
196,541 - BWI76_RS00960 0.70 -1.4
196,597 + -0.5
196,605 - BWI76_RS00960 0.74 -1.9
196,754 + BWI76_RS00960 0.83 -0.3
196,869 + -0.6
196,933 + -0.1
196,941 - -1.1
196,973 + +0.1
196,981 - +0.0
197,236 - BWI76_RS00965 0.80 -1.9
197,330 - -3.2
197,383 + -0.9
197,399 - BWI76_RS00970 0.10 -3.6
197,484 + BWI76_RS00970 0.19 -0.7
197,484 + BWI76_RS00970 0.19 +1.8
197,540 + BWI76_RS00970 0.25 -0.6
197,540 + BWI76_RS00970 0.25 -0.5
197,686 + BWI76_RS00970 0.41 -0.5

Or see this region's nucleotide sequence