Experiment: Thallium(I) acetate 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4022 and BT4023 are separated by 150 nucleotides BT4023 and BT4024 overlap by 4 nucleotides BT4024 and BT4025 are separated by 21 nucleotides BT4025 and BT4026 overlap by 4 nucleotides
BT4022: BT4022 - integrase (NCBI ptt file), at 5,238,754 to 5,239,983
BT4022
BT4023: BT4023 - transposase (NCBI ptt file), at 5,240,134 to 5,240,490
BT4023
BT4024: BT4024 - hypothetical protein (NCBI ptt file), at 5,240,487 to 5,240,747
BT4024
BT4025: BT4025 - hypothetical protein (NCBI ptt file), at 5,240,769 to 5,241,065
BT4025
BT4026: BT4026 - conserved hypothetical protein (NCBI ptt file), at 5,241,062 to 5,242,060
BT4026
Position (kb) 5240
5241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5239.159 kb on - strand, within BT4022 at 5239.162 kb on + strand, within BT4022 at 5239.163 kb on - strand, within BT4022 at 5239.163 kb on - strand, within BT4022 at 5239.196 kb on + strand, within BT4022 at 5239.211 kb on + strand, within BT4022 at 5239.243 kb on + strand, within BT4022 at 5239.344 kb on + strand, within BT4022 at 5239.373 kb on + strand, within BT4022 at 5239.386 kb on - strand, within BT4022 at 5239.386 kb on - strand, within BT4022 at 5239.386 kb on - strand, within BT4022 at 5239.529 kb on + strand, within BT4022 at 5239.529 kb on + strand, within BT4022 at 5239.568 kb on + strand, within BT4022 at 5239.569 kb on - strand at 5239.569 kb on - strand, within BT4022 at 5239.705 kb on - strand, within BT4022 at 5239.961 kb on - strand at 5240.051 kb on - strand at 5240.194 kb on - strand, within BT4023 at 5240.202 kb on - strand, within BT4023 at 5240.223 kb on - strand, within BT4023 at 5240.236 kb on - strand, within BT4023 at 5240.266 kb on - strand, within BT4023 at 5240.266 kb on - strand, within BT4023 at 5240.268 kb on - strand, within BT4023 at 5240.356 kb on - strand, within BT4023 at 5240.554 kb on - strand, within BT4024 at 5240.619 kb on - strand, within BT4024 at 5240.666 kb on - strand, within BT4024 at 5240.666 kb on - strand, within BT4024 at 5240.717 kb on - strand, within BT4024 at 5240.728 kb on - strand at 5240.743 kb on - strand at 5240.753 kb on - strand at 5240.763 kb on - strand at 5240.922 kb on - strand, within BT4025 at 5240.986 kb on - strand, within BT4025 at 5241.034 kb on - strand, within BT4025 at 5241.067 kb on + strand at 5241.068 kb on - strand at 5241.086 kb on + strand at 5241.123 kb on + strand at 5241.124 kb on - strand at 5241.158 kb on + strand at 5241.167 kb on + strand, within BT4026 at 5241.209 kb on + strand, within BT4026 at 5241.210 kb on - strand, within BT4026 at 5241.345 kb on + strand, within BT4026 at 5241.345 kb on + strand, within BT4026 at 5241.415 kb on - strand, within BT4026 at 5241.436 kb on - strand, within BT4026
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml remove 5,239,159 - BT4022 0.33 -0.5 5,239,162 + BT4022 0.33 -0.9 5,239,163 - BT4022 0.33 -0.2 5,239,163 - BT4022 0.33 -0.0 5,239,196 + BT4022 0.36 -0.3 5,239,211 + BT4022 0.37 -0.2 5,239,243 + BT4022 0.40 -0.3 5,239,344 + BT4022 0.48 -0.7 5,239,373 + BT4022 0.50 -2.2 5,239,386 - BT4022 0.51 -2.1 5,239,386 - BT4022 0.51 -0.4 5,239,386 - BT4022 0.51 -0.6 5,239,529 + BT4022 0.63 -1.4 5,239,529 + BT4022 0.63 -0.2 5,239,568 + BT4022 0.66 -1.0 5,239,569 - -1.0 5,239,569 - BT4022 0.66 -0.5 5,239,705 - BT4022 0.77 -0.9 5,239,961 - -1.1 5,240,051 - -1.6 5,240,194 - BT4023 0.17 -2.0 5,240,202 - BT4023 0.19 +0.3 5,240,223 - BT4023 0.25 +0.0 5,240,236 - BT4023 0.29 +0.6 5,240,266 - BT4023 0.37 +0.6 5,240,266 - BT4023 0.37 -0.4 5,240,268 - BT4023 0.38 -0.7 5,240,356 - BT4023 0.62 -0.0 5,240,554 - BT4024 0.26 -0.8 5,240,619 - BT4024 0.51 -1.0 5,240,666 - BT4024 0.69 -1.0 5,240,666 - BT4024 0.69 -2.0 5,240,717 - BT4024 0.88 -0.2 5,240,728 - -1.0 5,240,743 - -0.9 5,240,753 - -1.0 5,240,763 - -0.8 5,240,922 - BT4025 0.52 +2.6 5,240,986 - BT4025 0.73 -1.2 5,241,034 - BT4025 0.89 -0.5 5,241,067 + +0.6 5,241,068 - -0.4 5,241,086 + +1.4 5,241,123 + +0.4 5,241,124 - -0.5 5,241,158 + +0.2 5,241,167 + BT4026 0.11 -2.3 5,241,209 + BT4026 0.15 -0.0 5,241,210 - BT4026 0.15 -1.4 5,241,345 + BT4026 0.28 -2.8 5,241,345 + BT4026 0.28 -0.2 5,241,415 - BT4026 0.35 -0.7 5,241,436 - BT4026 0.37 +0.6
Or see this region's nucleotide sequence