Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1103
Experiment: Thallium(I) acetate 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,391,616 | - | BT1102 | 0.10 | +0.0 | |
1,391,622 | - | BT1102 | 0.11 | -0.7 | |
1,391,791 | - | BT1102 | 0.28 | +0.0 | |
1,392,001 | + | BT1102 | 0.50 | +0.9 | |
1,392,067 | + | BT1102 | 0.56 | +1.6 | |
1,392,078 | - | BT1102 | 0.57 | +0.6 | |
1,392,082 | + | BT1102 | 0.58 | -0.4 | |
1,392,082 | + | BT1102 | 0.58 | -0.9 | |
1,392,098 | + | BT1102 | 0.59 | +1.6 | |
1,392,098 | + | BT1102 | 0.59 | +0.6 | |
1,392,128 | + | BT1102 | 0.62 | -0.4 | |
1,392,128 | + | BT1102 | 0.62 | -0.4 | |
1,392,320 | + | BT1102 | 0.82 | -2.0 | |
1,392,321 | - | BT1102 | 0.82 | -1.0 | |
1,392,321 | - | BT1102 | 0.82 | +0.0 | |
1,392,321 | - | BT1102 | 0.82 | -0.3 | |
1,392,376 | + | BT1102 | 0.88 | -0.1 | |
1,392,510 | + | -0.4 | |||
1,392,604 | - | -2.0 | |||
1,392,692 | - | BT1103 | 0.26 | -0.4 | |
1,392,772 | + | BT1103 | 0.42 | -2.2 | |
1,392,877 | - | BT1103 | 0.64 | -2.5 | |
1,392,883 | - | BT1103 | 0.65 | -0.7 | |
1,392,951 | + | BT1103 | 0.79 | -0.7 | |
1,393,024 | + | +0.4 | |||
1,393,064 | + | -0.1 | |||
1,393,117 | + | +2.2 | |||
1,393,144 | + | -1.5 | |||
1,393,254 | + | BT1104 | 0.35 | -1.1 | |
1,393,360 | + | BT1104 | 0.60 | +0.6 | |
1,393,672 | + | +0.6 | |||
1,393,829 | + | BT1105 | 0.31 | -0.8 | |
1,393,884 | - | BT1105 | 0.38 | -2.1 | |
1,394,035 | + | BT1105 | 0.58 | -1.5 |
Or see this region's nucleotide sequence