Experiment: pyrophosphate 0.0025 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_764 and Pf6N2E2_765 are separated by 91 nucleotides Pf6N2E2_765 and Pf6N2E2_766 are separated by 58 nucleotides Pf6N2E2_766 and Pf6N2E2_767 are separated by 236 nucleotides
Pf6N2E2_764 - Fap amyloid fiber secretin, at 875,512 to 876,747
_764
Pf6N2E2_765 - Fap system putative outer membrane protein, at 876,839 to 877,585
_765
Pf6N2E2_766 - Fap protein with C39 domain, at 877,644 to 878,324
_766
Pf6N2E2_767 - Fap amyloid fibril major component, at 878,561 to 879,541
_767
Position (kb) 877
878
879 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 876.663 kb on - strand at 876.754 kb on + strand at 876.755 kb on - strand at 876.755 kb on - strand at 876.788 kb on + strand at 876.788 kb on + strand at 876.788 kb on + strand at 876.789 kb on - strand at 876.797 kb on + strand at 876.797 kb on + strand at 876.797 kb on + strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.808 kb on + strand at 876.808 kb on + strand at 876.835 kb on + strand at 876.835 kb on + strand at 876.835 kb on + strand at 876.835 kb on + strand at 876.836 kb on - strand at 876.836 kb on - strand at 876.836 kb on - strand at 876.959 kb on - strand, within Pf6N2E2_765 at 877.197 kb on + strand, within Pf6N2E2_765 at 877.197 kb on + strand, within Pf6N2E2_765 at 877.197 kb on + strand, within Pf6N2E2_765 at 877.198 kb on - strand, within Pf6N2E2_765 at 877.335 kb on + strand, within Pf6N2E2_765 at 877.335 kb on + strand, within Pf6N2E2_765 at 877.336 kb on - strand, within Pf6N2E2_765 at 877.417 kb on + strand, within Pf6N2E2_765 at 877.417 kb on + strand, within Pf6N2E2_765 at 877.418 kb on - strand, within Pf6N2E2_765 at 877.618 kb on + strand at 877.618 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.663 kb on - strand at 877.771 kb on + strand, within Pf6N2E2_766 at 877.834 kb on + strand, within Pf6N2E2_766 at 877.867 kb on + strand, within Pf6N2E2_766 at 877.894 kb on - strand, within Pf6N2E2_766 at 877.920 kb on + strand, within Pf6N2E2_766 at 878.014 kb on + strand, within Pf6N2E2_766 at 878.014 kb on + strand, within Pf6N2E2_766 at 878.119 kb on + strand, within Pf6N2E2_766 at 878.331 kb on + strand at 878.338 kb on - strand at 878.562 kb on + strand at 878.562 kb on + strand at 878.562 kb on + strand at 878.563 kb on - strand at 878.563 kb on - strand at 878.563 kb on - strand at 878.860 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.919 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.145 kb on + strand, within Pf6N2E2_767 at 879.191 kb on - strand, within Pf6N2E2_767 at 879.191 kb on - strand, within Pf6N2E2_767 at 879.268 kb on + strand, within Pf6N2E2_767
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 0.0025 M remove 876,663 - +0.6 876,754 + +1.6 876,755 - -0.2 876,755 - -0.1 876,788 + -1.2 876,788 + +0.1 876,788 + +0.8 876,789 - +0.3 876,797 + -0.4 876,797 + -0.6 876,797 + +1.9 876,798 - +2.2 876,798 - -0.7 876,798 - +0.9 876,798 - -0.4 876,798 - -0.4 876,798 - -0.7 876,808 + +0.9 876,808 + +0.7 876,835 + +0.3 876,835 + +0.6 876,835 + +0.2 876,835 + -0.5 876,836 - -2.0 876,836 - -0.6 876,836 - +0.6 876,959 - Pf6N2E2_765 0.16 +0.5 877,197 + Pf6N2E2_765 0.48 -1.5 877,197 + Pf6N2E2_765 0.48 +0.3 877,197 + Pf6N2E2_765 0.48 +1.0 877,198 - Pf6N2E2_765 0.48 +0.0 877,335 + Pf6N2E2_765 0.66 +0.2 877,335 + Pf6N2E2_765 0.66 -0.8 877,336 - Pf6N2E2_765 0.67 -0.4 877,417 + Pf6N2E2_765 0.77 +0.2 877,417 + Pf6N2E2_765 0.77 -0.3 877,418 - Pf6N2E2_765 0.78 -0.1 877,618 + -0.9 877,618 + +0.3 877,622 + +0.1 877,622 + -1.5 877,622 + -0.5 877,623 - -1.4 877,623 - +0.3 877,623 - +0.7 877,623 - +0.2 877,623 - -0.9 877,623 - +0.7 877,663 - +0.5 877,771 + Pf6N2E2_766 0.19 -2.1 877,834 + Pf6N2E2_766 0.28 -0.0 877,867 + Pf6N2E2_766 0.33 +0.3 877,894 - Pf6N2E2_766 0.37 +0.3 877,920 + Pf6N2E2_766 0.41 -1.3 878,014 + Pf6N2E2_766 0.54 -0.6 878,014 + Pf6N2E2_766 0.54 -2.1 878,119 + Pf6N2E2_766 0.70 -0.3 878,331 + -0.6 878,338 - +1.3 878,562 + +0.6 878,562 + -0.8 878,562 + +1.2 878,563 - +1.2 878,563 - +0.6 878,563 - -0.1 878,860 + Pf6N2E2_767 0.30 +0.7 878,892 + Pf6N2E2_767 0.34 +0.0 878,892 + Pf6N2E2_767 0.34 -0.8 878,892 + Pf6N2E2_767 0.34 -0.5 878,892 + Pf6N2E2_767 0.34 +0.3 878,893 - Pf6N2E2_767 0.34 -0.3 878,893 - Pf6N2E2_767 0.34 +0.2 878,893 - Pf6N2E2_767 0.34 +1.3 878,893 - Pf6N2E2_767 0.34 -0.3 878,893 - Pf6N2E2_767 0.34 +3.3 878,893 - Pf6N2E2_767 0.34 +0.2 878,893 - Pf6N2E2_767 0.34 +0.1 878,919 + Pf6N2E2_767 0.36 -0.1 879,135 + Pf6N2E2_767 0.59 -0.9 879,135 + Pf6N2E2_767 0.59 -0.5 879,135 + Pf6N2E2_767 0.59 +0.2 879,135 + Pf6N2E2_767 0.59 -0.0 879,136 - Pf6N2E2_767 0.59 +0.9 879,136 - Pf6N2E2_767 0.59 +1.1 879,136 - Pf6N2E2_767 0.59 -1.3 879,145 + Pf6N2E2_767 0.60 +0.0 879,191 - Pf6N2E2_767 0.64 -0.7 879,191 - Pf6N2E2_767 0.64 -0.4 879,268 + Pf6N2E2_767 0.72 -0.7
Or see this region's nucleotide sequence