Experiment: pyrophosphate 0.0025 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_23 and Pf6N2E2_24 are separated by 127 nucleotides Pf6N2E2_24 and Pf6N2E2_25 are separated by 75 nucleotides Pf6N2E2_25 and Pf6N2E2_26 are separated by 153 nucleotides
Pf6N2E2_23 - Hybrid sensory histidine kinase in two-component regulatory system with EvgA, at 58,372 to 61,572
_23
Pf6N2E2_24 - hypothetical protein, at 61,700 to 62,134
_24
Pf6N2E2_25 - DNA-binding response regulator, LuxR family, at 62,210 to 62,863
_25
Pf6N2E2_26 - Pirin, at 63,017 to 63,883
_26
Position (kb) 61
62
63 Strain fitness (log2 ratio) -2
-1
0
1
2 at 60.783 kb on - strand, within Pf6N2E2_23 at 60.864 kb on + strand, within Pf6N2E2_23 at 61.498 kb on - strand at 61.498 kb on - strand at 61.570 kb on + strand at 61.570 kb on + strand at 61.571 kb on - strand at 61.571 kb on - strand at 61.571 kb on - strand at 61.571 kb on - strand at 61.603 kb on + strand at 61.609 kb on + strand at 61.609 kb on + strand at 61.610 kb on - strand at 61.610 kb on - strand at 61.649 kb on + strand at 61.650 kb on - strand at 61.650 kb on - strand at 61.684 kb on + strand at 61.685 kb on - strand at 61.787 kb on + strand, within Pf6N2E2_24 at 61.787 kb on + strand, within Pf6N2E2_24 at 61.788 kb on - strand, within Pf6N2E2_24 at 61.788 kb on - strand, within Pf6N2E2_24 at 61.842 kb on - strand, within Pf6N2E2_24 at 61.842 kb on - strand, within Pf6N2E2_24 at 61.918 kb on + strand, within Pf6N2E2_24 at 61.922 kb on + strand, within Pf6N2E2_24 at 61.922 kb on + strand, within Pf6N2E2_24 at 61.922 kb on + strand, within Pf6N2E2_24 at 61.922 kb on + strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.952 kb on + strand, within Pf6N2E2_24 at 61.952 kb on + strand, within Pf6N2E2_24 at 61.953 kb on - strand, within Pf6N2E2_24 at 62.229 kb on + strand at 62.229 kb on + strand at 62.229 kb on + strand at 62.230 kb on - strand at 62.230 kb on - strand at 62.287 kb on - strand, within Pf6N2E2_25 at 62.287 kb on - strand, within Pf6N2E2_25 at 62.305 kb on + strand, within Pf6N2E2_25 at 62.305 kb on + strand, within Pf6N2E2_25 at 62.305 kb on + strand, within Pf6N2E2_25 at 62.306 kb on - strand, within Pf6N2E2_25 at 62.306 kb on - strand, within Pf6N2E2_25 at 62.616 kb on - strand, within Pf6N2E2_25 at 62.783 kb on + strand, within Pf6N2E2_25 at 62.783 kb on + strand, within Pf6N2E2_25 at 62.783 kb on + strand, within Pf6N2E2_25 at 62.783 kb on + strand, within Pf6N2E2_25 at 62.784 kb on - strand, within Pf6N2E2_25 at 62.784 kb on - strand, within Pf6N2E2_25 at 62.784 kb on - strand, within Pf6N2E2_25 at 62.784 kb on - strand, within Pf6N2E2_25 at 62.784 kb on - strand, within Pf6N2E2_25 at 62.880 kb on + strand at 62.880 kb on + strand at 62.881 kb on - strand at 62.895 kb on - strand at 62.921 kb on - strand at 62.929 kb on - strand at 62.948 kb on + strand at 62.949 kb on - strand at 62.971 kb on + strand at 62.972 kb on - strand at 62.972 kb on - strand at 62.972 kb on - strand at 62.996 kb on - strand at 62.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyrophosphate 0.0025 M remove 60,783 - Pf6N2E2_23 0.75 +2.7 60,864 + Pf6N2E2_23 0.78 -0.4 61,498 - +0.7 61,498 - +0.1 61,570 + -0.2 61,570 + -1.0 61,571 - +0.6 61,571 - +0.1 61,571 - -0.6 61,571 - +1.0 61,603 + +0.6 61,609 + -0.4 61,609 + +1.8 61,610 - +1.1 61,610 - +0.3 61,649 + +1.2 61,650 - -0.8 61,650 - -0.3 61,684 + +0.6 61,685 - -1.5 61,787 + Pf6N2E2_24 0.20 -0.2 61,787 + Pf6N2E2_24 0.20 -0.1 61,788 - Pf6N2E2_24 0.20 -0.9 61,788 - Pf6N2E2_24 0.20 -0.5 61,842 - Pf6N2E2_24 0.33 +1.1 61,842 - Pf6N2E2_24 0.33 -0.5 61,918 + Pf6N2E2_24 0.50 +0.2 61,922 + Pf6N2E2_24 0.51 -2.0 61,922 + Pf6N2E2_24 0.51 -0.4 61,922 + Pf6N2E2_24 0.51 -0.5 61,922 + Pf6N2E2_24 0.51 -1.8 61,923 - Pf6N2E2_24 0.51 -1.8 61,923 - Pf6N2E2_24 0.51 -0.1 61,923 - Pf6N2E2_24 0.51 +0.0 61,923 - Pf6N2E2_24 0.51 -0.5 61,923 - Pf6N2E2_24 0.51 -0.4 61,923 - Pf6N2E2_24 0.51 -0.1 61,923 - Pf6N2E2_24 0.51 +1.1 61,952 + Pf6N2E2_24 0.58 +0.2 61,952 + Pf6N2E2_24 0.58 +1.5 61,953 - Pf6N2E2_24 0.58 -0.5 62,229 + -0.4 62,229 + -0.3 62,229 + +0.6 62,230 - -0.1 62,230 - +0.5 62,287 - Pf6N2E2_25 0.12 -0.5 62,287 - Pf6N2E2_25 0.12 -1.2 62,305 + Pf6N2E2_25 0.15 +0.7 62,305 + Pf6N2E2_25 0.15 +0.2 62,305 + Pf6N2E2_25 0.15 +0.4 62,306 - Pf6N2E2_25 0.15 +0.7 62,306 - Pf6N2E2_25 0.15 +1.1 62,616 - Pf6N2E2_25 0.62 -1.2 62,783 + Pf6N2E2_25 0.88 +0.5 62,783 + Pf6N2E2_25 0.88 -0.2 62,783 + Pf6N2E2_25 0.88 +0.3 62,783 + Pf6N2E2_25 0.88 +0.5 62,784 - Pf6N2E2_25 0.88 -0.0 62,784 - Pf6N2E2_25 0.88 +0.2 62,784 - Pf6N2E2_25 0.88 -1.3 62,784 - Pf6N2E2_25 0.88 +0.6 62,784 - Pf6N2E2_25 0.88 -0.2 62,880 + -0.3 62,880 + -0.3 62,881 - +0.6 62,895 - -2.0 62,921 - +1.4 62,929 - -0.4 62,948 + -1.5 62,949 - +0.4 62,971 + +0.0 62,972 - +1.1 62,972 - -0.5 62,972 - +1.3 62,996 - +0.2 62,996 - -0.5
Or see this region's nucleotide sequence