Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1468

Experiment: pyrophosphate 0.0025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1467 and Pf6N2E2_1468 overlap by 4 nucleotidesPf6N2E2_1468 and Pf6N2E2_1469 overlap by 7 nucleotides Pf6N2E2_1467 - NAD-dependent formate dehydrogenase alpha subunit, at 1,714,851 to 1,717,727 _1467 Pf6N2E2_1468 - NAD-dependent formate dehydrogenase beta subunit, at 1,717,724 to 1,719,283 _1468 Pf6N2E2_1469 - NAD-dependent formate dehydrogenase gamma subunit, at 1,719,277 to 1,719,759 _1469 Position (kb) 1717 1718 1719 1720Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1716.725 kb on - strand, within Pf6N2E2_1467at 1716.760 kb on + strand, within Pf6N2E2_1467at 1716.979 kb on + strand, within Pf6N2E2_1467at 1716.992 kb on + strand, within Pf6N2E2_1467at 1717.393 kb on + strand, within Pf6N2E2_1467at 1717.394 kb on - strand, within Pf6N2E2_1467at 1717.394 kb on - strand, within Pf6N2E2_1467at 1717.404 kb on + strand, within Pf6N2E2_1467at 1717.405 kb on - strand, within Pf6N2E2_1467at 1717.405 kb on - strand, within Pf6N2E2_1467at 1717.405 kb on - strand, within Pf6N2E2_1467at 1717.830 kb on + strandat 1717.831 kb on - strandat 1718.085 kb on + strand, within Pf6N2E2_1468at 1718.311 kb on - strand, within Pf6N2E2_1468at 1718.482 kb on + strand, within Pf6N2E2_1468at 1718.482 kb on + strand, within Pf6N2E2_1468at 1718.483 kb on - strand, within Pf6N2E2_1468at 1718.485 kb on - strand, within Pf6N2E2_1468at 1718.485 kb on - strand, within Pf6N2E2_1468at 1718.485 kb on - strand, within Pf6N2E2_1468at 1718.594 kb on - strand, within Pf6N2E2_1468at 1718.625 kb on + strand, within Pf6N2E2_1468at 1718.625 kb on + strand, within Pf6N2E2_1468at 1718.625 kb on + strand, within Pf6N2E2_1468at 1718.625 kb on + strand, within Pf6N2E2_1468at 1718.625 kb on + strand, within Pf6N2E2_1468at 1718.626 kb on - strand, within Pf6N2E2_1468at 1718.626 kb on - strand, within Pf6N2E2_1468at 1718.626 kb on - strand, within Pf6N2E2_1468at 1718.626 kb on - strand, within Pf6N2E2_1468at 1718.631 kb on + strand, within Pf6N2E2_1468at 1718.631 kb on + strand, within Pf6N2E2_1468at 1718.631 kb on + strand, within Pf6N2E2_1468at 1718.632 kb on - strand, within Pf6N2E2_1468at 1718.760 kb on + strand, within Pf6N2E2_1468at 1718.761 kb on - strand, within Pf6N2E2_1468at 1718.761 kb on - strand, within Pf6N2E2_1468at 1718.761 kb on - strand, within Pf6N2E2_1468at 1718.761 kb on - strand, within Pf6N2E2_1468at 1718.761 kb on - strand, within Pf6N2E2_1468at 1718.925 kb on + strand, within Pf6N2E2_1468at 1719.147 kb on + strandat 1719.147 kb on + strandat 1719.147 kb on + strandat 1719.185 kb on + strandat 1719.185 kb on + strandat 1719.185 kb on + strandat 1719.268 kb on + strandat 1719.268 kb on + strandat 1719.399 kb on - strand, within Pf6N2E2_1469at 1719.531 kb on + strand, within Pf6N2E2_1469at 1719.566 kb on + strand, within Pf6N2E2_1469at 1719.567 kb on - strand, within Pf6N2E2_1469at 1719.647 kb on + strand, within Pf6N2E2_1469at 1719.648 kb on - strand, within Pf6N2E2_1469at 1719.648 kb on - strand, within Pf6N2E2_1469at 1719.678 kb on + strand, within Pf6N2E2_1469at 1719.679 kb on - strand, within Pf6N2E2_1469at 1719.759 kb on + strandat 1719.759 kb on + strandat 1719.760 kb on - strandat 1719.760 kb on - strandat 1719.765 kb on + strandat 1719.765 kb on + strandat 1719.766 kb on - strandat 1719.766 kb on - strandat 1720.133 kb on - strandat 1720.133 kb on - strandat 1720.134 kb on + strandat 1720.135 kb on - strandat 1720.135 kb on - strandat 1720.135 kb on - strandat 1720.135 kb on - strandat 1720.136 kb on + strandat 1720.136 kb on + strandat 1720.137 kb on - strandat 1720.137 kb on - strandat 1720.137 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyrophosphate 0.0025 M
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1,716,725 - Pf6N2E2_1467 0.65 +0.2
1,716,760 + Pf6N2E2_1467 0.66 +1.3
1,716,979 + Pf6N2E2_1467 0.74 +1.0
1,716,992 + Pf6N2E2_1467 0.74 +0.6
1,717,393 + Pf6N2E2_1467 0.88 +0.9
1,717,394 - Pf6N2E2_1467 0.88 +0.4
1,717,394 - Pf6N2E2_1467 0.88 +0.9
1,717,404 + Pf6N2E2_1467 0.89 +1.5
1,717,405 - Pf6N2E2_1467 0.89 +0.0
1,717,405 - Pf6N2E2_1467 0.89 +0.9
1,717,405 - Pf6N2E2_1467 0.89 +1.6
1,717,830 + +0.3
1,717,831 - +1.2
1,718,085 + Pf6N2E2_1468 0.23 -2.0
1,718,311 - Pf6N2E2_1468 0.38 +0.3
1,718,482 + Pf6N2E2_1468 0.49 -1.5
1,718,482 + Pf6N2E2_1468 0.49 +2.0
1,718,483 - Pf6N2E2_1468 0.49 -1.9
1,718,485 - Pf6N2E2_1468 0.49 -0.7
1,718,485 - Pf6N2E2_1468 0.49 +0.6
1,718,485 - Pf6N2E2_1468 0.49 +1.4
1,718,594 - Pf6N2E2_1468 0.56 +0.3
1,718,625 + Pf6N2E2_1468 0.58 +0.9
1,718,625 + Pf6N2E2_1468 0.58 +1.9
1,718,625 + Pf6N2E2_1468 0.58 -1.0
1,718,625 + Pf6N2E2_1468 0.58 -0.4
1,718,625 + Pf6N2E2_1468 0.58 +1.2
1,718,626 - Pf6N2E2_1468 0.58 -0.6
1,718,626 - Pf6N2E2_1468 0.58 +0.8
1,718,626 - Pf6N2E2_1468 0.58 -0.2
1,718,626 - Pf6N2E2_1468 0.58 -0.5
1,718,631 + Pf6N2E2_1468 0.58 +0.8
1,718,631 + Pf6N2E2_1468 0.58 +1.5
1,718,631 + Pf6N2E2_1468 0.58 +2.2
1,718,632 - Pf6N2E2_1468 0.58 -0.1
1,718,760 + Pf6N2E2_1468 0.66 +2.8
1,718,761 - Pf6N2E2_1468 0.66 -2.5
1,718,761 - Pf6N2E2_1468 0.66 +0.8
1,718,761 - Pf6N2E2_1468 0.66 +0.7
1,718,761 - Pf6N2E2_1468 0.66 -0.9
1,718,761 - Pf6N2E2_1468 0.66 +1.2
1,718,925 + Pf6N2E2_1468 0.77 -1.2
1,719,147 + -1.0
1,719,147 + -0.3
1,719,147 + +0.5
1,719,185 + -0.1
1,719,185 + -0.4
1,719,185 + -0.6
1,719,268 + -0.6
1,719,268 + -0.1
1,719,399 - Pf6N2E2_1469 0.25 -0.8
1,719,531 + Pf6N2E2_1469 0.53 -0.2
1,719,566 + Pf6N2E2_1469 0.60 +0.7
1,719,567 - Pf6N2E2_1469 0.60 -0.8
1,719,647 + Pf6N2E2_1469 0.77 -0.2
1,719,648 - Pf6N2E2_1469 0.77 -0.0
1,719,648 - Pf6N2E2_1469 0.77 +0.6
1,719,678 + Pf6N2E2_1469 0.83 +0.5
1,719,679 - Pf6N2E2_1469 0.83 +0.8
1,719,759 + -1.6
1,719,759 + +0.0
1,719,760 - -0.4
1,719,760 - +0.2
1,719,765 + -0.3
1,719,765 + -0.1
1,719,766 - +0.2
1,719,766 - +0.2
1,720,133 - +0.1
1,720,133 - +0.7
1,720,134 + +2.6
1,720,135 - +2.2
1,720,135 - -0.1
1,720,135 - -0.3
1,720,135 - -0.3
1,720,136 + -1.0
1,720,136 + -0.4
1,720,137 - -0.1
1,720,137 - -1.5
1,720,137 - -0.7

Or see this region's nucleotide sequence