Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_597 and Pf1N1B4_598 are separated by 228 nucleotides Pf1N1B4_598 and Pf1N1B4_599 overlap by 11 nucleotides Pf1N1B4_599 and Pf1N1B4_600 are separated by 177 nucleotides
Pf1N1B4_597 - D-mannose isomerase (EC 5.3.1.7) <small>(from data)</small>, at 689,093 to 690,352
_597
Pf1N1B4_598 - Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster, at 690,581 to 692,050
_598
Pf1N1B4_599 - DNA-binding response regulator GltR, controls specific porins for the entry of glucose, at 692,040 to 692,771
_599
Pf1N1B4_600 - Glucokinase (EC 2.7.1.2), at 692,949 to 693,908
_600
Position (kb) 690
691
692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 689.637 kb on + strand, within Pf1N1B4_597 at 689.638 kb on - strand, within Pf1N1B4_597 at 689.643 kb on + strand, within Pf1N1B4_597 at 689.643 kb on + strand at 689.644 kb on - strand, within Pf1N1B4_597 at 689.644 kb on - strand, within Pf1N1B4_597 at 689.644 kb on - strand, within Pf1N1B4_597 at 689.691 kb on + strand, within Pf1N1B4_597 at 689.692 kb on - strand, within Pf1N1B4_597 at 689.692 kb on - strand, within Pf1N1B4_597 at 689.692 kb on - strand, within Pf1N1B4_597 at 689.692 kb on - strand, within Pf1N1B4_597 at 689.829 kb on + strand, within Pf1N1B4_597 at 689.857 kb on + strand, within Pf1N1B4_597 at 690.000 kb on + strand, within Pf1N1B4_597 at 690.000 kb on + strand, within Pf1N1B4_597 at 690.163 kb on + strand, within Pf1N1B4_597 at 690.164 kb on - strand, within Pf1N1B4_597 at 690.164 kb on - strand, within Pf1N1B4_597 at 690.373 kb on + strand at 690.373 kb on + strand at 690.374 kb on - strand at 690.374 kb on - strand at 690.374 kb on - strand at 690.390 kb on + strand at 690.391 kb on - strand at 690.432 kb on + strand at 690.432 kb on + strand at 690.432 kb on + strand at 690.468 kb on + strand at 690.468 kb on + strand at 690.468 kb on + strand at 690.468 kb on + strand at 690.468 kb on + strand at 690.468 kb on + strand at 690.468 kb on + strand at 690.468 kb on + strand at 690.468 kb on + strand at 690.468 kb on + strand at 690.469 kb on - strand at 690.469 kb on - strand at 690.469 kb on - strand at 690.469 kb on - strand at 690.593 kb on - strand at 690.847 kb on - strand, within Pf1N1B4_598 at 690.967 kb on - strand, within Pf1N1B4_598 at 691.455 kb on + strand, within Pf1N1B4_598 at 691.482 kb on + strand, within Pf1N1B4_598 at 691.482 kb on + strand, within Pf1N1B4_598 at 691.482 kb on + strand, within Pf1N1B4_598 at 691.482 kb on + strand, within Pf1N1B4_598 at 691.483 kb on - strand, within Pf1N1B4_598 at 691.483 kb on - strand, within Pf1N1B4_598 at 691.483 kb on - strand, within Pf1N1B4_598 at 691.483 kb on - strand, within Pf1N1B4_598 at 691.483 kb on - strand, within Pf1N1B4_598 at 691.557 kb on + strand, within Pf1N1B4_598 at 691.557 kb on + strand, within Pf1N1B4_598 at 691.791 kb on - strand, within Pf1N1B4_598 at 692.081 kb on - strand at 692.458 kb on + strand, within Pf1N1B4_599 at 692.701 kb on + strand at 692.701 kb on + strand at 692.701 kb on + strand at 692.701 kb on + strand at 692.701 kb on + strand at 692.702 kb on - strand at 692.702 kb on - strand at 692.702 kb on - strand at 692.702 kb on - strand at 692.702 kb on - strand at 692.722 kb on - strand at 692.722 kb on - strand at 692.807 kb on + strand at 692.807 kb on + strand at 692.807 kb on + strand at 692.807 kb on + strand at 692.807 kb on + strand at 692.808 kb on - strand at 692.808 kb on - strand at 692.814 kb on + strand at 692.814 kb on + strand at 692.828 kb on - strand at 692.828 kb on - strand at 692.844 kb on + strand at 692.844 kb on + strand at 692.845 kb on - strand at 692.845 kb on - strand at 693.040 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 689,637 + Pf1N1B4_597 0.43 -0.6 689,638 - Pf1N1B4_597 0.43 -0.0 689,643 + Pf1N1B4_597 0.44 -0.9 689,643 + +0.5 689,644 - Pf1N1B4_597 0.44 +0.9 689,644 - Pf1N1B4_597 0.44 +0.6 689,644 - Pf1N1B4_597 0.44 -0.2 689,691 + Pf1N1B4_597 0.47 -0.0 689,692 - Pf1N1B4_597 0.48 +0.4 689,692 - Pf1N1B4_597 0.48 -0.2 689,692 - Pf1N1B4_597 0.48 +0.2 689,692 - Pf1N1B4_597 0.48 +0.6 689,829 + Pf1N1B4_597 0.58 -0.8 689,857 + Pf1N1B4_597 0.61 -1.8 690,000 + Pf1N1B4_597 0.72 +0.1 690,000 + Pf1N1B4_597 0.72 -0.2 690,163 + Pf1N1B4_597 0.85 -0.1 690,164 - Pf1N1B4_597 0.85 -0.6 690,164 - Pf1N1B4_597 0.85 -1.2 690,373 + -0.5 690,373 + -0.1 690,374 - +1.1 690,374 - +0.0 690,374 - +0.4 690,390 + -0.3 690,391 - -0.7 690,432 + -0.3 690,432 + -1.2 690,432 + -0.8 690,468 + -0.5 690,468 + -0.3 690,468 + +1.0 690,468 + +0.5 690,468 + -0.6 690,468 + -0.6 690,468 + -0.0 690,468 + +0.7 690,468 + +0.2 690,468 + -0.6 690,469 - -0.2 690,469 - +2.1 690,469 - -1.3 690,469 - -0.7 690,593 - -2.0 690,847 - Pf1N1B4_598 0.18 +1.0 690,967 - Pf1N1B4_598 0.26 -1.6 691,455 + Pf1N1B4_598 0.59 -2.6 691,482 + Pf1N1B4_598 0.61 -1.6 691,482 + Pf1N1B4_598 0.61 -0.5 691,482 + Pf1N1B4_598 0.61 -1.6 691,482 + Pf1N1B4_598 0.61 -1.6 691,483 - Pf1N1B4_598 0.61 -1.2 691,483 - Pf1N1B4_598 0.61 -1.3 691,483 - Pf1N1B4_598 0.61 -1.2 691,483 - Pf1N1B4_598 0.61 -1.0 691,483 - Pf1N1B4_598 0.61 -2.2 691,557 + Pf1N1B4_598 0.66 -0.4 691,557 + Pf1N1B4_598 0.66 -2.4 691,791 - Pf1N1B4_598 0.82 -1.8 692,081 - -1.8 692,458 + Pf1N1B4_599 0.57 -1.0 692,701 + -1.2 692,701 + -1.9 692,701 + -1.9 692,701 + -2.7 692,701 + -1.8 692,702 - -2.2 692,702 - -1.9 692,702 - +0.6 692,702 - -2.3 692,702 - -0.2 692,722 - -1.8 692,722 - -0.7 692,807 + -3.3 692,807 + -1.0 692,807 + -1.5 692,807 + -1.9 692,807 + -2.9 692,808 - -0.2 692,808 - +0.7 692,814 + -0.4 692,814 + -0.5 692,828 - -0.6 692,828 - -1.3 692,844 + -0.8 692,844 + -0.9 692,845 - +1.0 692,845 - -1.2 693,040 + -0.6
Or see this region's nucleotide sequence