Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4644 and Pf1N1B4_4645 are separated by 245 nucleotides Pf1N1B4_4645 and Pf1N1B4_4646 are separated by 123 nucleotides Pf1N1B4_4646 and Pf1N1B4_4647 are separated by 205 nucleotides Pf1N1B4_4647 and Pf1N1B4_4648 are separated by 228 nucleotides
Pf1N1B4_4644 - hypothetical protein, at 5,124,245 to 5,124,505
_4644
Pf1N1B4_4645 - FIG00954888: hypothetical protein, at 5,124,751 to 5,125,044
_4645
Pf1N1B4_4646 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 5,125,168 to 5,126,601
_4646
Pf1N1B4_4647 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 5,126,807 to 5,127,247
_4647
Pf1N1B4_4648 - transcriptional regulator, MerR family, at 5,127,476 to 5,128,453
_4648
Position (kb)
5125
5126
5127 Strain fitness (log2 ratio)
-2
-1
0
1 at 5124.210 kb on + strand at 5124.211 kb on - strand at 5124.217 kb on - strand at 5124.232 kb on - strand at 5124.247 kb on - strand at 5124.285 kb on + strand at 5124.285 kb on + strand, within Pf1N1B4_4644 at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand, within Pf1N1B4_4644 at 5124.286 kb on - strand at 5124.545 kb on + strand at 5124.545 kb on + strand at 5124.546 kb on - strand at 5124.611 kb on + strand at 5124.611 kb on + strand at 5124.924 kb on - strand, within Pf1N1B4_4645 at 5124.924 kb on - strand, within Pf1N1B4_4645 at 5124.924 kb on - strand, within Pf1N1B4_4645 at 5125.148 kb on + strand at 5125.299 kb on - strand at 5125.549 kb on - strand, within Pf1N1B4_4646 at 5125.636 kb on + strand, within Pf1N1B4_4646 at 5125.636 kb on + strand, within Pf1N1B4_4646 at 5125.637 kb on - strand at 5125.873 kb on - strand, within Pf1N1B4_4646 at 5126.263 kb on + strand, within Pf1N1B4_4646 at 5126.378 kb on + strand, within Pf1N1B4_4646 at 5126.432 kb on + strand, within Pf1N1B4_4646 at 5126.433 kb on - strand, within Pf1N1B4_4646 at 5126.562 kb on + strand at 5126.769 kb on + strand at 5126.785 kb on - strand at 5126.826 kb on - strand at 5127.246 kb on - strand at 5127.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 5,124,210 + -0.6 5,124,211 - -0.0 5,124,217 - -0.2 5,124,232 - +0.0 5,124,247 - -1.4 5,124,285 + -2.6 5,124,285 + Pf1N1B4_4644 0.15 +0.4 5,124,286 - Pf1N1B4_4644 0.16 -0.1 5,124,286 - +0.5 5,124,286 - Pf1N1B4_4644 0.16 +1.5 5,124,286 - -0.2 5,124,286 - Pf1N1B4_4644 0.16 -1.6 5,124,286 - Pf1N1B4_4644 0.16 -0.9 5,124,286 - +0.1 5,124,286 - Pf1N1B4_4644 0.16 -0.5 5,124,286 - Pf1N1B4_4644 0.16 -1.5 5,124,286 - +0.1 5,124,545 + +0.1 5,124,545 + -0.0 5,124,546 - -0.3 5,124,611 + +0.5 5,124,611 + -0.3 5,124,924 - Pf1N1B4_4645 0.59 +0.4 5,124,924 - Pf1N1B4_4645 0.59 -0.8 5,124,924 - Pf1N1B4_4645 0.59 -0.0 5,125,148 + -0.3 5,125,299 - +0.3 5,125,549 - Pf1N1B4_4646 0.27 -0.9 5,125,636 + Pf1N1B4_4646 0.33 -0.5 5,125,636 + Pf1N1B4_4646 0.33 -0.9 5,125,637 - +1.5 5,125,873 - Pf1N1B4_4646 0.49 -0.8 5,126,263 + Pf1N1B4_4646 0.76 -1.3 5,126,378 + Pf1N1B4_4646 0.84 -1.1 5,126,432 + Pf1N1B4_4646 0.88 -0.8 5,126,433 - Pf1N1B4_4646 0.88 +0.3 5,126,562 + -1.2 5,126,769 + +1.4 5,126,785 - -0.6 5,126,826 - +1.5 5,127,246 - +0.9 5,127,550 - -1.2
Or see this region's nucleotide sequence