Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4646

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4644 and Pf1N1B4_4645 are separated by 245 nucleotidesPf1N1B4_4645 and Pf1N1B4_4646 are separated by 123 nucleotidesPf1N1B4_4646 and Pf1N1B4_4647 are separated by 205 nucleotidesPf1N1B4_4647 and Pf1N1B4_4648 are separated by 228 nucleotides Pf1N1B4_4644 - hypothetical protein, at 5,124,245 to 5,124,505 _4644 Pf1N1B4_4645 - FIG00954888: hypothetical protein, at 5,124,751 to 5,125,044 _4645 Pf1N1B4_4646 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 5,125,168 to 5,126,601 _4646 Pf1N1B4_4647 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 5,126,807 to 5,127,247 _4647 Pf1N1B4_4648 - transcriptional regulator, MerR family, at 5,127,476 to 5,128,453 _4648 Position (kb) 5125 5126 5127Strain fitness (log2 ratio) -2 -1 0 1at 5124.210 kb on + strandat 5124.211 kb on - strandat 5124.217 kb on - strandat 5124.232 kb on - strandat 5124.247 kb on - strandat 5124.285 kb on + strandat 5124.285 kb on + strand, within Pf1N1B4_4644at 5124.286 kb on - strand, within Pf1N1B4_4644at 5124.286 kb on - strandat 5124.286 kb on - strand, within Pf1N1B4_4644at 5124.286 kb on - strandat 5124.286 kb on - strand, within Pf1N1B4_4644at 5124.286 kb on - strand, within Pf1N1B4_4644at 5124.286 kb on - strandat 5124.286 kb on - strand, within Pf1N1B4_4644at 5124.286 kb on - strand, within Pf1N1B4_4644at 5124.286 kb on - strandat 5124.545 kb on + strandat 5124.545 kb on + strandat 5124.546 kb on - strandat 5124.611 kb on + strandat 5124.611 kb on + strandat 5124.924 kb on - strand, within Pf1N1B4_4645at 5124.924 kb on - strand, within Pf1N1B4_4645at 5124.924 kb on - strand, within Pf1N1B4_4645at 5125.148 kb on + strandat 5125.299 kb on - strandat 5125.549 kb on - strand, within Pf1N1B4_4646at 5125.636 kb on + strand, within Pf1N1B4_4646at 5125.636 kb on + strand, within Pf1N1B4_4646at 5125.637 kb on - strandat 5125.873 kb on - strand, within Pf1N1B4_4646at 5126.263 kb on + strand, within Pf1N1B4_4646at 5126.378 kb on + strand, within Pf1N1B4_4646at 5126.432 kb on + strand, within Pf1N1B4_4646at 5126.433 kb on - strand, within Pf1N1B4_4646at 5126.562 kb on + strandat 5126.769 kb on + strandat 5126.785 kb on - strandat 5126.826 kb on - strandat 5127.246 kb on - strandat 5127.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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5,124,210 + -0.6
5,124,211 - -0.0
5,124,217 - -0.2
5,124,232 - +0.0
5,124,247 - -1.4
5,124,285 + -2.6
5,124,285 + Pf1N1B4_4644 0.15 +0.4
5,124,286 - Pf1N1B4_4644 0.16 -0.1
5,124,286 - +0.5
5,124,286 - Pf1N1B4_4644 0.16 +1.5
5,124,286 - -0.2
5,124,286 - Pf1N1B4_4644 0.16 -1.6
5,124,286 - Pf1N1B4_4644 0.16 -0.9
5,124,286 - +0.1
5,124,286 - Pf1N1B4_4644 0.16 -0.5
5,124,286 - Pf1N1B4_4644 0.16 -1.5
5,124,286 - +0.1
5,124,545 + +0.1
5,124,545 + -0.0
5,124,546 - -0.3
5,124,611 + +0.5
5,124,611 + -0.3
5,124,924 - Pf1N1B4_4645 0.59 +0.4
5,124,924 - Pf1N1B4_4645 0.59 -0.8
5,124,924 - Pf1N1B4_4645 0.59 -0.0
5,125,148 + -0.3
5,125,299 - +0.3
5,125,549 - Pf1N1B4_4646 0.27 -0.9
5,125,636 + Pf1N1B4_4646 0.33 -0.5
5,125,636 + Pf1N1B4_4646 0.33 -0.9
5,125,637 - +1.5
5,125,873 - Pf1N1B4_4646 0.49 -0.8
5,126,263 + Pf1N1B4_4646 0.76 -1.3
5,126,378 + Pf1N1B4_4646 0.84 -1.1
5,126,432 + Pf1N1B4_4646 0.88 -0.8
5,126,433 - Pf1N1B4_4646 0.88 +0.3
5,126,562 + -1.2
5,126,769 + +1.4
5,126,785 - -0.6
5,126,826 - +1.5
5,127,246 - +0.9
5,127,550 - -1.2

Or see this region's nucleotide sequence