Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4489

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4488 and Pf1N1B4_4489 are separated by 127 nucleotidesPf1N1B4_4489 and Pf1N1B4_4490 are separated by 57 nucleotidesPf1N1B4_4490 and Pf1N1B4_4491 are separated by 267 nucleotides Pf1N1B4_4488 - Sensory box histidine kinase/response regulator, at 4,949,952 to 4,952,546 _4488 Pf1N1B4_4489 - Transcriptional regulator, LuxR family, at 4,952,674 to 4,953,339 _4489 Pf1N1B4_4490 - Rhodanese-related sulfurtransferase, at 4,953,397 to 4,953,954 _4490 Pf1N1B4_4491 - ABC transporter permease protein, at 4,954,222 to 4,955,013 _4491 Position (kb) 4952 4953 4954Strain fitness (log2 ratio) -1 0 1at 4951.713 kb on + strand, within Pf1N1B4_4488at 4951.842 kb on + strand, within Pf1N1B4_4488at 4952.304 kb on + strandat 4952.433 kb on + strandat 4952.538 kb on - strandat 4952.907 kb on + strand, within Pf1N1B4_4489at 4952.966 kb on + strand, within Pf1N1B4_4489at 4953.051 kb on - strand, within Pf1N1B4_4489at 4953.376 kb on + strandat 4953.486 kb on + strand, within Pf1N1B4_4490at 4953.487 kb on - strand, within Pf1N1B4_4490at 4953.487 kb on - strand, within Pf1N1B4_4490at 4953.493 kb on + strand, within Pf1N1B4_4490at 4953.970 kb on + strandat 4953.970 kb on + strandat 4953.971 kb on - strandat 4953.971 kb on - strandat 4953.971 kb on - strandat 4953.971 kb on - strandat 4953.975 kb on - strandat 4954.028 kb on + strandat 4954.036 kb on + strandat 4954.039 kb on + strandat 4954.039 kb on + strandat 4954.040 kb on - strandat 4954.044 kb on + strandat 4954.099 kb on + strandat 4954.099 kb on + strandat 4954.224 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,951,713 + Pf1N1B4_4488 0.68 -0.1
4,951,842 + Pf1N1B4_4488 0.73 +0.9
4,952,304 + -0.1
4,952,433 + +0.0
4,952,538 - +0.3
4,952,907 + Pf1N1B4_4489 0.35 -1.2
4,952,966 + Pf1N1B4_4489 0.44 -1.0
4,953,051 - Pf1N1B4_4489 0.57 -0.6
4,953,376 + +0.3
4,953,486 + Pf1N1B4_4490 0.16 -0.1
4,953,487 - Pf1N1B4_4490 0.16 +0.3
4,953,487 - Pf1N1B4_4490 0.16 +0.4
4,953,493 + Pf1N1B4_4490 0.17 -0.8
4,953,970 + -0.8
4,953,970 + +1.2
4,953,971 - +1.6
4,953,971 - +0.6
4,953,971 - -1.7
4,953,971 - +0.4
4,953,975 - +0.6
4,954,028 + -0.3
4,954,036 + +0.2
4,954,039 + -0.3
4,954,039 + -1.4
4,954,040 - -1.4
4,954,044 + +0.9
4,954,099 + -0.3
4,954,099 + -0.2
4,954,224 - +0.9

Or see this region's nucleotide sequence