Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4417 and Pf1N1B4_4418 overlap by 4 nucleotides Pf1N1B4_4418 and Pf1N1B4_4419 are separated by 232 nucleotides Pf1N1B4_4419 and Pf1N1B4_4420 are separated by 112 nucleotides Pf1N1B4_4420 and Pf1N1B4_4421 are separated by 68 nucleotides
Pf1N1B4_4417 - Transcriptional regulator, at 4,879,900 to 4,880,547
_4417
Pf1N1B4_4418 - hypothetical protein, at 4,880,544 to 4,880,705
_4418
Pf1N1B4_4419 - Organosulfonate utilization protein SsuF, at 4,880,938 to 4,881,153
_4419
Pf1N1B4_4420 - hypothetical protein, at 4,881,266 to 4,881,406
_4420
Pf1N1B4_4421 - LysR family transcriptional regulator lrhA, at 4,881,475 to 4,882,335
_4421
Position (kb)
4880
4881
4882 Strain fitness (log2 ratio)
-2
-1
0
1 at 4879.989 kb on - strand, within Pf1N1B4_4417 at 4880.021 kb on + strand at 4880.021 kb on + strand, within Pf1N1B4_4417 at 4880.022 kb on - strand, within Pf1N1B4_4417 at 4880.022 kb on - strand, within Pf1N1B4_4417 at 4880.599 kb on - strand, within Pf1N1B4_4418 at 4880.599 kb on - strand, within Pf1N1B4_4418 at 4880.609 kb on + strand, within Pf1N1B4_4418 at 4880.617 kb on + strand, within Pf1N1B4_4418 at 4880.617 kb on + strand, within Pf1N1B4_4418 at 4880.705 kb on + strand at 4880.750 kb on - strand at 4880.993 kb on + strand, within Pf1N1B4_4419 at 4880.996 kb on + strand, within Pf1N1B4_4419 at 4880.997 kb on - strand at 4881.060 kb on + strand, within Pf1N1B4_4419 at 4881.060 kb on + strand, within Pf1N1B4_4419 at 4881.156 kb on + strand at 4881.156 kb on + strand at 4881.194 kb on + strand at 4881.194 kb on + strand at 4881.506 kb on + strand at 4881.506 kb on + strand at 4881.507 kb on - strand at 4881.558 kb on - strand at 4881.698 kb on + strand, within Pf1N1B4_4421 at 4881.698 kb on + strand, within Pf1N1B4_4421 at 4882.049 kb on - strand, within Pf1N1B4_4421 at 4882.049 kb on - strand, within Pf1N1B4_4421
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,879,989 - Pf1N1B4_4417 0.14 -0.1 4,880,021 + -1.2 4,880,021 + Pf1N1B4_4417 0.19 -0.1 4,880,022 - Pf1N1B4_4417 0.19 +0.1 4,880,022 - Pf1N1B4_4417 0.19 -2.1 4,880,599 - Pf1N1B4_4418 0.34 -1.7 4,880,599 - Pf1N1B4_4418 0.34 -0.6 4,880,609 + Pf1N1B4_4418 0.40 -0.4 4,880,617 + Pf1N1B4_4418 0.45 -2.3 4,880,617 + Pf1N1B4_4418 0.45 +0.2 4,880,705 + -0.7 4,880,750 - +0.3 4,880,993 + Pf1N1B4_4419 0.25 -1.1 4,880,996 + Pf1N1B4_4419 0.27 -0.4 4,880,997 - +0.9 4,881,060 + Pf1N1B4_4419 0.56 -2.7 4,881,060 + Pf1N1B4_4419 0.56 -0.5 4,881,156 + +1.2 4,881,156 + -0.4 4,881,194 + +0.5 4,881,194 + -0.6 4,881,506 + +0.3 4,881,506 + +0.0 4,881,507 - -0.4 4,881,558 - +0.6 4,881,698 + Pf1N1B4_4421 0.26 -0.8 4,881,698 + Pf1N1B4_4421 0.26 +0.9 4,882,049 - Pf1N1B4_4421 0.67 +0.2 4,882,049 - Pf1N1B4_4421 0.67 -0.5
Or see this region's nucleotide sequence