Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4419

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4417 and Pf1N1B4_4418 overlap by 4 nucleotidesPf1N1B4_4418 and Pf1N1B4_4419 are separated by 232 nucleotidesPf1N1B4_4419 and Pf1N1B4_4420 are separated by 112 nucleotidesPf1N1B4_4420 and Pf1N1B4_4421 are separated by 68 nucleotides Pf1N1B4_4417 - Transcriptional regulator, at 4,879,900 to 4,880,547 _4417 Pf1N1B4_4418 - hypothetical protein, at 4,880,544 to 4,880,705 _4418 Pf1N1B4_4419 - Organosulfonate utilization protein SsuF, at 4,880,938 to 4,881,153 _4419 Pf1N1B4_4420 - hypothetical protein, at 4,881,266 to 4,881,406 _4420 Pf1N1B4_4421 - LysR family transcriptional regulator lrhA, at 4,881,475 to 4,882,335 _4421 Position (kb) 4880 4881 4882Strain fitness (log2 ratio) -2 -1 0 1at 4879.989 kb on - strand, within Pf1N1B4_4417at 4880.021 kb on + strandat 4880.021 kb on + strand, within Pf1N1B4_4417at 4880.022 kb on - strand, within Pf1N1B4_4417at 4880.022 kb on - strand, within Pf1N1B4_4417at 4880.599 kb on - strand, within Pf1N1B4_4418at 4880.599 kb on - strand, within Pf1N1B4_4418at 4880.609 kb on + strand, within Pf1N1B4_4418at 4880.617 kb on + strand, within Pf1N1B4_4418at 4880.617 kb on + strand, within Pf1N1B4_4418at 4880.705 kb on + strandat 4880.750 kb on - strandat 4880.993 kb on + strand, within Pf1N1B4_4419at 4880.996 kb on + strand, within Pf1N1B4_4419at 4880.997 kb on - strandat 4881.060 kb on + strand, within Pf1N1B4_4419at 4881.060 kb on + strand, within Pf1N1B4_4419at 4881.156 kb on + strandat 4881.156 kb on + strandat 4881.194 kb on + strandat 4881.194 kb on + strandat 4881.506 kb on + strandat 4881.506 kb on + strandat 4881.507 kb on - strandat 4881.558 kb on - strandat 4881.698 kb on + strand, within Pf1N1B4_4421at 4881.698 kb on + strand, within Pf1N1B4_4421at 4882.049 kb on - strand, within Pf1N1B4_4421at 4882.049 kb on - strand, within Pf1N1B4_4421

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,879,989 - Pf1N1B4_4417 0.14 -0.1
4,880,021 + -1.2
4,880,021 + Pf1N1B4_4417 0.19 -0.1
4,880,022 - Pf1N1B4_4417 0.19 +0.1
4,880,022 - Pf1N1B4_4417 0.19 -2.1
4,880,599 - Pf1N1B4_4418 0.34 -1.7
4,880,599 - Pf1N1B4_4418 0.34 -0.6
4,880,609 + Pf1N1B4_4418 0.40 -0.4
4,880,617 + Pf1N1B4_4418 0.45 -2.3
4,880,617 + Pf1N1B4_4418 0.45 +0.2
4,880,705 + -0.7
4,880,750 - +0.3
4,880,993 + Pf1N1B4_4419 0.25 -1.1
4,880,996 + Pf1N1B4_4419 0.27 -0.4
4,880,997 - +0.9
4,881,060 + Pf1N1B4_4419 0.56 -2.7
4,881,060 + Pf1N1B4_4419 0.56 -0.5
4,881,156 + +1.2
4,881,156 + -0.4
4,881,194 + +0.5
4,881,194 + -0.6
4,881,506 + +0.3
4,881,506 + +0.0
4,881,507 - -0.4
4,881,558 - +0.6
4,881,698 + Pf1N1B4_4421 0.26 -0.8
4,881,698 + Pf1N1B4_4421 0.26 +0.9
4,882,049 - Pf1N1B4_4421 0.67 +0.2
4,882,049 - Pf1N1B4_4421 0.67 -0.5

Or see this region's nucleotide sequence