Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3437

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3435 and Pf1N1B4_3436 are separated by 188 nucleotidesPf1N1B4_3436 and Pf1N1B4_3437 overlap by 24 nucleotidesPf1N1B4_3437 and Pf1N1B4_3438 are separated by 34 nucleotides Pf1N1B4_3435 - ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data), at 3,828,229 to 3,828,993 _3435 Pf1N1B4_3436 - hypothetical protein, at 3,829,182 to 3,829,337 _3436 Pf1N1B4_3437 - Arginine pathway regulatory protein ArgR, repressor of arg regulon, at 3,829,314 to 3,830,219 _3437 Pf1N1B4_3438 - FIG00963434: hypothetical protein, at 3,830,254 to 3,835,287 _3438 Position (kb) 3829 3830 3831Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3828.357 kb on + strand, within Pf1N1B4_3435at 3828.357 kb on + strand, within Pf1N1B4_3435at 3828.358 kb on - strand, within Pf1N1B4_3435at 3828.415 kb on - strand, within Pf1N1B4_3435at 3828.625 kb on + strand, within Pf1N1B4_3435at 3828.625 kb on + strand, within Pf1N1B4_3435at 3828.991 kb on + strandat 3828.991 kb on + strandat 3828.992 kb on - strandat 3828.992 kb on - strandat 3829.280 kb on + strand, within Pf1N1B4_3436at 3829.281 kb on - strand, within Pf1N1B4_3436at 3829.281 kb on - strand, within Pf1N1B4_3436at 3829.350 kb on + strandat 3829.351 kb on - strandat 3829.532 kb on - strand, within Pf1N1B4_3437at 3829.558 kb on - strand, within Pf1N1B4_3437at 3829.945 kb on + strand, within Pf1N1B4_3437at 3829.980 kb on + strand, within Pf1N1B4_3437at 3829.980 kb on + strand, within Pf1N1B4_3437at 3829.981 kb on - strand, within Pf1N1B4_3437at 3829.981 kb on - strand, within Pf1N1B4_3437at 3829.981 kb on - strand, within Pf1N1B4_3437at 3829.981 kb on - strand, within Pf1N1B4_3437at 3829.981 kb on - strand, within Pf1N1B4_3437at 3830.005 kb on - strand, within Pf1N1B4_3437at 3830.007 kb on + strand, within Pf1N1B4_3437at 3830.007 kb on + strand, within Pf1N1B4_3437at 3830.007 kb on + strand, within Pf1N1B4_3437at 3830.008 kb on - strand, within Pf1N1B4_3437at 3830.008 kb on - strand, within Pf1N1B4_3437at 3830.008 kb on - strand, within Pf1N1B4_3437at 3830.008 kb on - strand, within Pf1N1B4_3437at 3830.008 kb on - strand, within Pf1N1B4_3437at 3830.008 kb on - strand, within Pf1N1B4_3437at 3830.008 kb on - strand, within Pf1N1B4_3437at 3830.008 kb on - strand, within Pf1N1B4_3437at 3830.008 kb on - strand, within Pf1N1B4_3437at 3830.351 kb on + strandat 3830.543 kb on - strandat 3830.552 kb on - strandat 3830.619 kb on - strandat 3830.834 kb on + strand, within Pf1N1B4_3438at 3830.834 kb on + strand, within Pf1N1B4_3438at 3830.834 kb on + strand, within Pf1N1B4_3438at 3830.834 kb on + strand, within Pf1N1B4_3438at 3830.835 kb on - strandat 3830.835 kb on - strand, within Pf1N1B4_3438at 3830.912 kb on + strand, within Pf1N1B4_3438at 3830.912 kb on + strand, within Pf1N1B4_3438at 3830.912 kb on + strand, within Pf1N1B4_3438at 3830.912 kb on + strand, within Pf1N1B4_3438at 3830.912 kb on + strand, within Pf1N1B4_3438at 3830.912 kb on + strand, within Pf1N1B4_3438at 3830.912 kb on + strand, within Pf1N1B4_3438at 3830.913 kb on - strand, within Pf1N1B4_3438at 3830.913 kb on - strand, within Pf1N1B4_3438at 3830.913 kb on - strand, within Pf1N1B4_3438at 3831.217 kb on + strand, within Pf1N1B4_3438at 3831.217 kb on + strand, within Pf1N1B4_3438at 3831.217 kb on + strandat 3831.217 kb on + strand, within Pf1N1B4_3438

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,828,357 + Pf1N1B4_3435 0.17 -1.1
3,828,357 + Pf1N1B4_3435 0.17 -1.4
3,828,358 - Pf1N1B4_3435 0.17 -1.9
3,828,415 - Pf1N1B4_3435 0.24 -2.1
3,828,625 + Pf1N1B4_3435 0.52 -1.2
3,828,625 + Pf1N1B4_3435 0.52 +0.1
3,828,991 + -2.9
3,828,991 + +0.2
3,828,992 - -1.1
3,828,992 - -1.7
3,829,280 + Pf1N1B4_3436 0.63 -1.3
3,829,281 - Pf1N1B4_3436 0.63 -1.1
3,829,281 - Pf1N1B4_3436 0.63 +0.2
3,829,350 + +1.9
3,829,351 - -0.4
3,829,532 - Pf1N1B4_3437 0.24 -1.0
3,829,558 - Pf1N1B4_3437 0.27 +0.5
3,829,945 + Pf1N1B4_3437 0.70 -2.8
3,829,980 + Pf1N1B4_3437 0.74 -0.3
3,829,980 + Pf1N1B4_3437 0.74 -0.1
3,829,981 - Pf1N1B4_3437 0.74 +0.2
3,829,981 - Pf1N1B4_3437 0.74 -2.7
3,829,981 - Pf1N1B4_3437 0.74 -2.5
3,829,981 - Pf1N1B4_3437 0.74 +0.2
3,829,981 - Pf1N1B4_3437 0.74 -0.9
3,830,005 - Pf1N1B4_3437 0.76 -0.8
3,830,007 + Pf1N1B4_3437 0.76 -1.4
3,830,007 + Pf1N1B4_3437 0.76 -0.1
3,830,007 + Pf1N1B4_3437 0.76 -1.4
3,830,008 - Pf1N1B4_3437 0.77 -0.5
3,830,008 - Pf1N1B4_3437 0.77 -1.1
3,830,008 - Pf1N1B4_3437 0.77 -0.9
3,830,008 - Pf1N1B4_3437 0.77 -0.5
3,830,008 - Pf1N1B4_3437 0.77 +0.2
3,830,008 - Pf1N1B4_3437 0.77 -0.5
3,830,008 - Pf1N1B4_3437 0.77 -0.8
3,830,008 - Pf1N1B4_3437 0.77 -1.1
3,830,008 - Pf1N1B4_3437 0.77 -0.7
3,830,351 + +1.4
3,830,543 - -1.1
3,830,552 - +0.2
3,830,619 - -1.1
3,830,834 + Pf1N1B4_3438 0.12 +0.7
3,830,834 + Pf1N1B4_3438 0.12 +1.1
3,830,834 + Pf1N1B4_3438 0.12 -0.5
3,830,834 + Pf1N1B4_3438 0.12 -0.5
3,830,835 - -0.1
3,830,835 - Pf1N1B4_3438 0.12 +0.3
3,830,912 + Pf1N1B4_3438 0.13 -0.7
3,830,912 + Pf1N1B4_3438 0.13 -1.1
3,830,912 + Pf1N1B4_3438 0.13 +0.7
3,830,912 + Pf1N1B4_3438 0.13 -0.9
3,830,912 + Pf1N1B4_3438 0.13 -0.2
3,830,912 + Pf1N1B4_3438 0.13 -0.1
3,830,912 + Pf1N1B4_3438 0.13 +0.1
3,830,913 - Pf1N1B4_3438 0.13 +0.2
3,830,913 - Pf1N1B4_3438 0.13 -1.2
3,830,913 - Pf1N1B4_3438 0.13 +0.5
3,831,217 + Pf1N1B4_3438 0.19 +1.1
3,831,217 + Pf1N1B4_3438 0.19 -0.9
3,831,217 + +0.9
3,831,217 + Pf1N1B4_3438 0.19 -0.1

Or see this region's nucleotide sequence