Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3435 and Pf1N1B4_3436 are separated by 188 nucleotides Pf1N1B4_3436 and Pf1N1B4_3437 overlap by 24 nucleotides Pf1N1B4_3437 and Pf1N1B4_3438 are separated by 34 nucleotides
Pf1N1B4_3435 - ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) , at 3,828,229 to 3,828,993
_3435
Pf1N1B4_3436 - hypothetical protein, at 3,829,182 to 3,829,337
_3436
Pf1N1B4_3437 - Arginine pathway regulatory protein ArgR, repressor of arg regulon, at 3,829,314 to 3,830,219
_3437
Pf1N1B4_3438 - FIG00963434: hypothetical protein, at 3,830,254 to 3,835,287
_3438
Position (kb)
3829
3830
3831 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3828.357 kb on + strand, within Pf1N1B4_3435 at 3828.357 kb on + strand, within Pf1N1B4_3435 at 3828.358 kb on - strand, within Pf1N1B4_3435 at 3828.415 kb on - strand, within Pf1N1B4_3435 at 3828.625 kb on + strand, within Pf1N1B4_3435 at 3828.625 kb on + strand, within Pf1N1B4_3435 at 3828.991 kb on + strand at 3828.991 kb on + strand at 3828.992 kb on - strand at 3828.992 kb on - strand at 3829.280 kb on + strand, within Pf1N1B4_3436 at 3829.281 kb on - strand, within Pf1N1B4_3436 at 3829.281 kb on - strand, within Pf1N1B4_3436 at 3829.350 kb on + strand at 3829.351 kb on - strand at 3829.532 kb on - strand, within Pf1N1B4_3437 at 3829.558 kb on - strand, within Pf1N1B4_3437 at 3829.945 kb on + strand, within Pf1N1B4_3437 at 3829.980 kb on + strand, within Pf1N1B4_3437 at 3829.980 kb on + strand, within Pf1N1B4_3437 at 3829.981 kb on - strand, within Pf1N1B4_3437 at 3829.981 kb on - strand, within Pf1N1B4_3437 at 3829.981 kb on - strand, within Pf1N1B4_3437 at 3829.981 kb on - strand, within Pf1N1B4_3437 at 3829.981 kb on - strand, within Pf1N1B4_3437 at 3830.005 kb on - strand, within Pf1N1B4_3437 at 3830.007 kb on + strand, within Pf1N1B4_3437 at 3830.007 kb on + strand, within Pf1N1B4_3437 at 3830.007 kb on + strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.008 kb on - strand, within Pf1N1B4_3437 at 3830.351 kb on + strand at 3830.543 kb on - strand at 3830.552 kb on - strand at 3830.619 kb on - strand at 3830.834 kb on + strand, within Pf1N1B4_3438 at 3830.834 kb on + strand, within Pf1N1B4_3438 at 3830.834 kb on + strand, within Pf1N1B4_3438 at 3830.834 kb on + strand, within Pf1N1B4_3438 at 3830.835 kb on - strand at 3830.835 kb on - strand, within Pf1N1B4_3438 at 3830.912 kb on + strand, within Pf1N1B4_3438 at 3830.912 kb on + strand, within Pf1N1B4_3438 at 3830.912 kb on + strand, within Pf1N1B4_3438 at 3830.912 kb on + strand, within Pf1N1B4_3438 at 3830.912 kb on + strand, within Pf1N1B4_3438 at 3830.912 kb on + strand, within Pf1N1B4_3438 at 3830.912 kb on + strand, within Pf1N1B4_3438 at 3830.913 kb on - strand, within Pf1N1B4_3438 at 3830.913 kb on - strand, within Pf1N1B4_3438 at 3830.913 kb on - strand, within Pf1N1B4_3438 at 3831.217 kb on + strand, within Pf1N1B4_3438 at 3831.217 kb on + strand, within Pf1N1B4_3438 at 3831.217 kb on + strand at 3831.217 kb on + strand, within Pf1N1B4_3438
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,828,357 + Pf1N1B4_3435 0.17 -1.1 3,828,357 + Pf1N1B4_3435 0.17 -1.4 3,828,358 - Pf1N1B4_3435 0.17 -1.9 3,828,415 - Pf1N1B4_3435 0.24 -2.1 3,828,625 + Pf1N1B4_3435 0.52 -1.2 3,828,625 + Pf1N1B4_3435 0.52 +0.1 3,828,991 + -2.9 3,828,991 + +0.2 3,828,992 - -1.1 3,828,992 - -1.7 3,829,280 + Pf1N1B4_3436 0.63 -1.3 3,829,281 - Pf1N1B4_3436 0.63 -1.1 3,829,281 - Pf1N1B4_3436 0.63 +0.2 3,829,350 + +1.9 3,829,351 - -0.4 3,829,532 - Pf1N1B4_3437 0.24 -1.0 3,829,558 - Pf1N1B4_3437 0.27 +0.5 3,829,945 + Pf1N1B4_3437 0.70 -2.8 3,829,980 + Pf1N1B4_3437 0.74 -0.3 3,829,980 + Pf1N1B4_3437 0.74 -0.1 3,829,981 - Pf1N1B4_3437 0.74 +0.2 3,829,981 - Pf1N1B4_3437 0.74 -2.7 3,829,981 - Pf1N1B4_3437 0.74 -2.5 3,829,981 - Pf1N1B4_3437 0.74 +0.2 3,829,981 - Pf1N1B4_3437 0.74 -0.9 3,830,005 - Pf1N1B4_3437 0.76 -0.8 3,830,007 + Pf1N1B4_3437 0.76 -1.4 3,830,007 + Pf1N1B4_3437 0.76 -0.1 3,830,007 + Pf1N1B4_3437 0.76 -1.4 3,830,008 - Pf1N1B4_3437 0.77 -0.5 3,830,008 - Pf1N1B4_3437 0.77 -1.1 3,830,008 - Pf1N1B4_3437 0.77 -0.9 3,830,008 - Pf1N1B4_3437 0.77 -0.5 3,830,008 - Pf1N1B4_3437 0.77 +0.2 3,830,008 - Pf1N1B4_3437 0.77 -0.5 3,830,008 - Pf1N1B4_3437 0.77 -0.8 3,830,008 - Pf1N1B4_3437 0.77 -1.1 3,830,008 - Pf1N1B4_3437 0.77 -0.7 3,830,351 + +1.4 3,830,543 - -1.1 3,830,552 - +0.2 3,830,619 - -1.1 3,830,834 + Pf1N1B4_3438 0.12 +0.7 3,830,834 + Pf1N1B4_3438 0.12 +1.1 3,830,834 + Pf1N1B4_3438 0.12 -0.5 3,830,834 + Pf1N1B4_3438 0.12 -0.5 3,830,835 - -0.1 3,830,835 - Pf1N1B4_3438 0.12 +0.3 3,830,912 + Pf1N1B4_3438 0.13 -0.7 3,830,912 + Pf1N1B4_3438 0.13 -1.1 3,830,912 + Pf1N1B4_3438 0.13 +0.7 3,830,912 + Pf1N1B4_3438 0.13 -0.9 3,830,912 + Pf1N1B4_3438 0.13 -0.2 3,830,912 + Pf1N1B4_3438 0.13 -0.1 3,830,912 + Pf1N1B4_3438 0.13 +0.1 3,830,913 - Pf1N1B4_3438 0.13 +0.2 3,830,913 - Pf1N1B4_3438 0.13 -1.2 3,830,913 - Pf1N1B4_3438 0.13 +0.5 3,831,217 + Pf1N1B4_3438 0.19 +1.1 3,831,217 + Pf1N1B4_3438 0.19 -0.9 3,831,217 + +0.9 3,831,217 + Pf1N1B4_3438 0.19 -0.1
Or see this region's nucleotide sequence