Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1351

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1349 and Pf1N1B4_1350 are separated by 9 nucleotidesPf1N1B4_1350 and Pf1N1B4_1351 are separated by 5 nucleotidesPf1N1B4_1351 and Pf1N1B4_1352 overlap by 1 nucleotidesPf1N1B4_1352 and Pf1N1B4_1353 are separated by 126 nucleotides Pf1N1B4_1349 - Urease gamma subunit (EC 3.5.1.5), at 1,546,092 to 1,546,394 _1349 Pf1N1B4_1350 - GCN5-related N-acetyltransferase, at 1,546,404 to 1,546,937 _1350 Pf1N1B4_1351 - Tabtoxin resistance protein, at 1,546,943 to 1,547,476 _1351 Pf1N1B4_1352 - Urease beta subunit (EC 3.5.1.5), at 1,547,476 to 1,547,784 _1352 Pf1N1B4_1353 - Urease alpha subunit (EC 3.5.1.5), at 1,547,911 to 1,549,611 _1353 Position (kb) 1546 1547 1548Strain fitness (log2 ratio) -2 -1 0 1at 1545.978 kb on - strandat 1545.978 kb on - strandat 1546.047 kb on - strandat 1546.067 kb on - strandat 1546.204 kb on - strand, within Pf1N1B4_1349at 1546.410 kb on + strandat 1546.410 kb on + strandat 1546.411 kb on - strandat 1546.461 kb on + strand, within Pf1N1B4_1350at 1546.461 kb on + strand, within Pf1N1B4_1350at 1546.461 kb on + strand, within Pf1N1B4_1350at 1546.461 kb on + strand, within Pf1N1B4_1350at 1546.462 kb on - strand, within Pf1N1B4_1350at 1546.598 kb on - strand, within Pf1N1B4_1350at 1546.668 kb on + strand, within Pf1N1B4_1350at 1546.669 kb on - strand, within Pf1N1B4_1350at 1546.849 kb on + strand, within Pf1N1B4_1350at 1546.939 kb on - strandat 1547.087 kb on + strand, within Pf1N1B4_1351at 1547.088 kb on - strand, within Pf1N1B4_1351at 1547.324 kb on + strand, within Pf1N1B4_1351at 1547.324 kb on + strand, within Pf1N1B4_1351at 1547.324 kb on + strand, within Pf1N1B4_1351at 1547.325 kb on - strand, within Pf1N1B4_1351at 1547.364 kb on - strand, within Pf1N1B4_1351at 1547.364 kb on - strand, within Pf1N1B4_1351at 1547.364 kb on - strand, within Pf1N1B4_1351at 1547.364 kb on - strandat 1547.448 kb on - strandat 1547.450 kb on + strandat 1547.450 kb on + strandat 1547.450 kb on + strandat 1547.451 kb on - strandat 1547.451 kb on - strandat 1547.451 kb on - strandat 1547.451 kb on - strandat 1547.593 kb on + strand, within Pf1N1B4_1352at 1547.782 kb on + strandat 1547.933 kb on - strandat 1548.023 kb on - strandat 1548.309 kb on + strand, within Pf1N1B4_1353

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,545,978 - -0.6
1,545,978 - -1.9
1,546,047 - +0.5
1,546,067 - -2.4
1,546,204 - Pf1N1B4_1349 0.37 -0.2
1,546,410 + -0.4
1,546,410 + -0.2
1,546,411 - +0.1
1,546,461 + Pf1N1B4_1350 0.11 +1.1
1,546,461 + Pf1N1B4_1350 0.11 -1.4
1,546,461 + Pf1N1B4_1350 0.11 -0.2
1,546,461 + Pf1N1B4_1350 0.11 +0.3
1,546,462 - Pf1N1B4_1350 0.11 +0.3
1,546,598 - Pf1N1B4_1350 0.36 -0.0
1,546,668 + Pf1N1B4_1350 0.49 -0.3
1,546,669 - Pf1N1B4_1350 0.50 -0.7
1,546,849 + Pf1N1B4_1350 0.83 -0.3
1,546,939 - +0.7
1,547,087 + Pf1N1B4_1351 0.27 +0.3
1,547,088 - Pf1N1B4_1351 0.27 -0.3
1,547,324 + Pf1N1B4_1351 0.71 -0.2
1,547,324 + Pf1N1B4_1351 0.71 +0.3
1,547,324 + Pf1N1B4_1351 0.71 -0.9
1,547,325 - Pf1N1B4_1351 0.72 -0.1
1,547,364 - Pf1N1B4_1351 0.79 -1.7
1,547,364 - Pf1N1B4_1351 0.79 +1.3
1,547,364 - Pf1N1B4_1351 0.79 +0.4
1,547,364 - +0.7
1,547,448 - -1.2
1,547,450 + -0.6
1,547,450 + -1.4
1,547,450 + -0.3
1,547,451 - -0.2
1,547,451 - -0.1
1,547,451 - +0.7
1,547,451 - -1.1
1,547,593 + Pf1N1B4_1352 0.38 +0.1
1,547,782 + -1.7
1,547,933 - +0.4
1,548,023 - +0.0
1,548,309 + Pf1N1B4_1353 0.23 +0.1

Or see this region's nucleotide sequence