Strain Fitness in Pantoea sp. MT58 around IAI47_21385

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
10,670	+				-1.3
10,671	-				+0.0
10,671	-				+0.7
10,671	-				-0.6
10,672	+				-0.4
10,672	+				+0.9
10,672	+				+0.9
10,672	+				-0.2
10,672	+				+0.1
10,672	+				+1.8
10,672	+				+0.9
10,672	+				-1.5
10,672	+				-0.6
10,672	+				+0.0
10,672	+				-0.9
10,672	+				+0.1
10,672	+				-0.2
10,672	+				-0.1
10,672	+				-0.0
10,672	+				+0.9
10,672	+				-2.0
10,672	+				+2.6
10,672	+				+1.5
10,672	+				+0.8
10,672	+				-0.2
10,672	+				+0.5
10,672	+				+0.5
10,673	-				+1.8
10,673	-				+0.1
10,673	-				-0.9
10,673	-				-0.4
10,673	-				+0.3
10,673	-				-1.2
10,673	-				+0.1
10,673	-				-1.2
10,673	-				+0.4
10,673	-				-0.6
10,673	-				+0.8
10,673	-				-1.7
10,674	+				+1.6
10,674	+				+0.2
10,674	+				-1.4
10,674	+				-0.5
10,674	+				+1.3
10,674	+				-1.1
10,674	+				-2.8
10,674	+				+0.0
10,674	+				+0.0
10,674	+				-0.8
10,674	+				-1.4
10,674	+				+1.5
10,674	+				+1.3
10,675	-				-0.1
10,675	-				-1.4
10,675	-				-0.2
10,675	-				+1.0
10,675	-				-1.4
10,675	-				-2.7
10,675	-				+1.1
10,675	-				+0.6
10,675	-				+0.4
10,675	-				-0.2
10,675	-				-0.4
10,675	-				+1.5
10,675	-				+1.3
10,675	-				+0.4
10,675	-				-0.2
10,675	-				-0.5
10,675	-				-2.2
10,675	-				+0.8
10,689	+				-0.7
10,689	+				-2.7
10,689	+				+4.3
10,690	-				-1.3
10,701	+				+3.6
10,701	+				+0.1
10,702	-				+0.8
10,702	-				-1.1
10,702	-				+4.0
10,702	-				+0.0
10,714	+				-0.5
10,714	+				+0.8
10,715	-				-0.3
10,721	+				+0.5
10,722	-				+0.7
10,722	-				+4.1
10,727	+				+1.1
10,727	+				+0.4
10,727	+				-2.7
10,727	+				-0.4
10,728	-				-0.6
10,728	-				-0.9
10,728	-				+0.9
10,728	-				+0.4
10,748	+				+0.4
10,749	-				+2.0
10,769	+				-1.1
10,769	+				-2.0
10,769	+				+0.5
10,770	-				-1.2
10,770	-				-0.7
10,783	+				-0.7
10,783	+				+1.0
10,783	+				+0.6
10,784	-				+0.7
10,791	+				+0.0
10,792	-				-0.3
10,800	+				-2.7
10,809	-				+0.6
10,810	-				+1.0
10,839	+				+0.4
10,839	+				-0.9
10,839	+				+0.3
10,839	+				-0.6
10,839	+				-0.2
10,839	+				-2.2
10,839	+				-0.6
10,840	-				-0.3
10,840	-				+0.8
10,840	-				+0.1
10,840	-				-0.6
10,868	+				+0.5
10,922	-				+0.3
10,922	-				+5.0
10,923	+				+1.9
10,924	-				+2.3
10,924	-				-0.1
10,924	-				+0.4
10,932	-				-2.5
10,932	-				+0.6
10,932	-				+0.8
10,932	-				-2.3
10,934	+				+0.3
10,934	+				+1.4
10,934	+				+0.9
10,934	+				+3.9
10,934	+				-0.5
10,934	+				-2.0
10,934	+				-0.6
10,934	+				-0.3
10,935	-				-2.7
10,935	-				+1.1
10,936	+				-1.9
10,936	+				+0.9
10,936	+				-0.6
10,936	+				+0.3
10,937	-				+0.8
10,937	-				+3.0
10,942	+				-0.2
10,942	+				+0.3
10,942	+				-0.6
10,942	+				+1.3
10,943	-				-3.0
10,943	-				-0.6
10,943	-				-0.1
10,976	+				+0.8
10,976	+				-1.2
10,977	-				+0.3
10,977	-				-2.3
10,977	-				-0.2
10,977	-				-1.7
10,991	-				+0.2
11,037	-				-0.9
11,043	+				-0.9
11,043	+				-0.5
11,044	-				-3.1
11,044	-				-1.2
11,044	-				-1.4
11,058	-				+1.3
11,058	-				+1.2
11,061	+				+0.3
11,062	-				+0.8
11,111	+				-1.7
11,116	+				+0.7
11,117	-				-0.2
11,117	-				-0.4
11,143	-				+0.4
11,148	+				-0.1
11,148	+				+0.2
11,149	-				+0.1
11,178	+				+0.9
11,178	+				+1.7
11,179	-				+0.5
11,179	-				-1.0
11,179	-				-0.1
11,179	-				+0.3
11,179	-				+0.8
11,201	-				-3.7
11,201	-				-0.6
11,201	-				+0.2
11,208	+				+0.8
11,208	+				-0.7
11,208	+				-0.5
11,208	+				+0.4
11,208	+				+0.2
11,208	+				+0.6
11,208	+				-0.8
11,209	-				-0.4
11,209	-				+0.9
11,209	-				+4.2
11,209	-				+0.3
11,209	-				-0.8
11,209	-				+1.4
11,223	+				-0.6
11,224	-				-0.9
11,224	-				+1.2
11,250	+				+0.6
11,271	+				+0.8
11,272	-				-0.2
11,272	-				-1.4
11,287	+				+0.4
11,287	+				-1.4
11,287	+				+1.4
11,288	-				-0.1
11,288	-				-0.2
11,306	+				+0.8
11,337	+				-3.3
11,337	+				-2.4
11,337	+				+0.4
11,337	+				-0.6
11,337	+				-1.2
11,337	+				+2.1
11,338	-				-0.6
11,338	-				-1.3
11,338	-				-3.0
11,338	-				+1.2
11,338	-				-0.3
11,362	-				+2.6
11,362	-				-0.0
11,392	-				+1.6
11,418	+				+2.3
11,437	-				-0.6
11,447	+				-0.6
11,447	+				-0.6
11,447	+				-0.2
11,471	-				-0.6
11,477	-				-0.9
11,477	-				-1.3
11,482	+				-0.1
11,482	+				-0.5
11,512	-				+0.1
11,512	-				+3.4
11,601	+				-0.3
11,603	+				-1.7
11,718	+		IAI47_21385	0.31	-0.9
11,718	+		IAI47_21385	0.31	-1.7
11,719	-		IAI47_21385	0.32	-0.0
11,719	-		IAI47_21385	0.32	-2.3
11,719	-		IAI47_21385	0.32	-0.9
11,719	-		IAI47_21385	0.32	-3.9
11,719	-		IAI47_21385	0.32	-1.2
11,719	-		IAI47_21385	0.32	-2.2
11,719	-		IAI47_21385	0.32	+0.1
11,765	+		IAI47_21385	0.51	-0.7
11,766	-		IAI47_21385	0.52	+0.6
11,766	-		IAI47_21385	0.52	+2.1
11,766	-		IAI47_21385	0.52	-2.5
11,803	+		IAI47_21385	0.68	-1.6
11,803	+		IAI47_21385	0.68	-0.6
11,803	+		IAI47_21385	0.68	-0.9
11,803	+		IAI47_21385	0.68	+1.3
11,803	+		IAI47_21385	0.68	+0.9
11,803	+		IAI47_21385	0.68	+0.3
11,804	-		IAI47_21385	0.68	-1.4
11,804	-		IAI47_21385	0.68	-0.9
11,804	-		IAI47_21385	0.68	-2.3
11,804	-		IAI47_21385	0.68	-0.2
11,804	-		IAI47_21385	0.68	-0.6
11,804	-		IAI47_21385	0.68	-1.1
11,804	-		IAI47_21385	0.68	-1.7
11,804	-		IAI47_21385	0.68	+0.9
11,804	-		IAI47_21385	0.68	+0.0
11,804	-		IAI47_21385	0.68	-0.1
11,805	+		IAI47_21385	0.68	-1.2
11,805	+		IAI47_21385	0.68	-0.8
11,805	+		IAI47_21385	0.68	+2.4
11,806	-		IAI47_21385	0.69	-1.7
11,806	-		IAI47_21385	0.69	-1.0
11,806	-		IAI47_21385	0.69	+1.1
11,877	-				+1.5
11,877	-				+1.2
11,877	-				-0.4
11,899	+				-1.3
11,899	+				-0.3
11,899	+				-1.6
11,899	+				-2.0
11,900	-				+0.3
11,900	-				-1.3
11,900	-				+3.6
11,900	-				+3.9
11,900	-				-2.2
11,900	-				+0.0
11,900	-				-1.9
11,922	+				+0.4
11,922	+				-0.6
11,923	-				-0.3
12,009	-		IAI47_21390	0.15	-1.6
12,009	-		IAI47_21390	0.15	+2.5
12,075	-		IAI47_21390	0.35	-0.0
12,081	+		IAI47_21390	0.36	+0.7
12,152	+		IAI47_21390	0.58	+0.8
12,152	+		IAI47_21390	0.58	-0.5
12,153	-		IAI47_21390	0.58	-3.0
12,153	-		IAI47_21390	0.58	+0.6
12,153	-		IAI47_21390	0.58	+0.4
12,167	+		IAI47_21390	0.62	-0.9
12,168	-		IAI47_21390	0.63	+1.4
12,168	-		IAI47_21390	0.63	+0.3
12,168	-		IAI47_21390	0.63	-1.3
12,193	+		IAI47_21390	0.70	+0.7
12,194	-		IAI47_21390	0.71	-0.6
12,223	+		IAI47_21390	0.79	+0.1
12,236	+		IAI47_21390	0.83	-0.8
12,236	+		IAI47_21390	0.83	-1.3
12,294	+				+0.5
12,294	+				+0.1
12,295	-				+0.4
12,295	-				-1.4
12,295	-				+2.3
12,295	-				-1.2
12,297	+				-0.2
12,297	+				-0.9
12,307	-				-0.9
12,307	-				-0.5
12,324	+				+0.4
12,336	+				+0.6
12,336	+				-1.9
12,337	-				-1.6
12,337	-				-2.6
12,337	-				-1.8
12,361	+				+0.2
12,361	+				+0.4
12,361	+				+1.0
12,361	+				-0.5
12,362	-				-0.1
12,400	+				-0.9
12,446	+				+1.3
12,446	+				+0.2
12,447	-				+1.2
12,465	+				+1.2
12,472	+				+0.3
12,472	+				-2.0
12,472	+				-1.9
12,472	+				-0.6
12,472	+				+0.1
12,472	+				+0.1
12,472	+				-2.0
12,473	-				-0.1
12,529	+				+0.2
12,529	+				-0.2
12,530	-				+0.4
12,562	-				-2.1
12,562	-				-0.9
12,562	-				+0.3
12,603	+				+0.8
12,603	+				+1.4
12,603	+				-0.9
12,604	-				+0.6
12,604	-				+2.0
12,662	+				-0.9
12,662	+				+0.4
12,662	+				-1.4
12,663	-				-3.5
12,663	-				+3.2
12,663	-				-0.5
12,663	-				-0.6
12,663	-				+1.6
12,663	-				-0.6
12,663	-				+1.4
12,666	+				+1.2
12,666	+				-1.4
12,666	+				+0.1
12,666	+				+0.8
12,666	+				+0.2
12,666	+				+0.4
12,667	-				-1.4
12,667	-				+2.9
12,681	+				-2.8
12,681	+				-1.6
12,681	+				-3.0
12,681	+				+3.8
12,681	+				+0.7
12,682	-				-0.3
12,721	+				-0.6
12,722	-				+0.3
12,725	+				+2.8
12,729	+				+0.3
12,730	-				-1.9
12,736	-				-1.9
12,762	+				+0.8
12,762	+				+0.9
12,778	-				+0.0
12,781	+				-0.9
12,781	+				+1.4
12,781	+				-1.3
12,781	+				+0.9
12,781	+				-0.9
12,781	+				+2.1
12,781	+				-0.3
12,781	+				-1.6
12,781	+				-1.9
12,782	-				-2.5
12,782	-				-0.2
12,822	+				-0.6
12,826	+				+1.4
12,826	+				+1.1
12,826	+				+0.1
12,835	+				-0.2
12,835	+				-1.0
12,839	+				-0.3