Strain Fitness in Pantoea sp. MT58 around IAI47_21345

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,856	+		IAI47_21340	0.37	-0.7
2,857	-		IAI47_21340	0.37	-1.2
2,857	-		IAI47_21340	0.37	+0.2
2,880	+		IAI47_21340	0.39	+0.2
2,880	+		IAI47_21340	0.39	-0.4
2,880	+		IAI47_21340	0.39	+0.3
2,880	+		IAI47_21340	0.39	+1.4
2,880	+		IAI47_21340	0.39	-2.9
2,880	+		IAI47_21340	0.39	+3.4
2,880	+		IAI47_21340	0.39	+0.7
2,881	-		IAI47_21340	0.39	-2.0
2,881	-		IAI47_21340	0.39	-0.5
2,881	-		IAI47_21340	0.39	-2.5
2,901	+		IAI47_21340	0.41	-2.9
2,902	-		IAI47_21340	0.41	-0.6
2,914	+		IAI47_21340	0.42	+0.5
2,914	+		IAI47_21340	0.42	-1.9
2,924	+		IAI47_21340	0.43	+0.1
2,924	+		IAI47_21340	0.43	+0.8
2,925	-		IAI47_21340	0.43	-1.2
2,966	+		IAI47_21340	0.47	-0.9
2,966	+		IAI47_21340	0.47	+0.7
2,985	-		IAI47_21340	0.48	-0.4
2,989	+		IAI47_21340	0.49	+0.4
2,989	+		IAI47_21340	0.49	+0.9
2,989	+		IAI47_21340	0.49	-0.2
2,989	+		IAI47_21340	0.49	-1.2
2,989	+		IAI47_21340	0.49	-1.3
2,990	-		IAI47_21340	0.49	+1.4
2,990	-		IAI47_21340	0.49	+0.4
2,990	-		IAI47_21340	0.49	-1.4
2,990	-		IAI47_21340	0.49	+1.9
3,123	+		IAI47_21340	0.60	+0.1
3,123	+		IAI47_21340	0.60	-2.7
3,123	+		IAI47_21340	0.60	+1.2
3,123	+		IAI47_21340	0.60	+2.1
3,124	-		IAI47_21340	0.60	-0.3
3,124	-		IAI47_21340	0.60	-1.4
3,124	-		IAI47_21340	0.60	-0.7
3,124	-		IAI47_21340	0.60	+1.0
3,124	-		IAI47_21340	0.60	+0.4
3,124	-		IAI47_21340	0.60	-0.5
3,124	-		IAI47_21340	0.60	-2.4
3,144	-		IAI47_21340	0.62	-2.5
3,154	+		IAI47_21340	0.62	+0.5
3,175	+		IAI47_21340	0.64	-0.1
3,175	+		IAI47_21340	0.64	+2.0
3,176	-		IAI47_21340	0.64	-1.4
3,176	-		IAI47_21340	0.64	-0.3
3,178	+		IAI47_21340	0.64	+0.1
3,178	+		IAI47_21340	0.64	+1.2
3,179	-		IAI47_21340	0.65	+1.7
3,179	-		IAI47_21340	0.65	+0.6
3,179	-		IAI47_21340	0.65	+0.0
3,201	+		IAI47_21340	0.66	+1.7
3,238	+		IAI47_21340	0.70	+1.9
3,238	+		IAI47_21340	0.70	+3.7
3,238	+		IAI47_21340	0.70	+0.3
3,238	+		IAI47_21340	0.70	-0.7
3,238	+		IAI47_21340	0.70	-0.9
3,238	+		IAI47_21340	0.70	+0.5
3,238	+		IAI47_21340	0.70	+1.4
3,238	+		IAI47_21340	0.70	+0.7
3,239	-		IAI47_21340	0.70	-1.9
3,239	-		IAI47_21340	0.70	+1.3
3,239	-		IAI47_21340	0.70	-0.1
3,239	-		IAI47_21340	0.70	+1.4
3,239	-		IAI47_21340	0.70	-0.9
3,239	-		IAI47_21340	0.70	+0.6
3,251	-		IAI47_21340	0.71	-0.6
3,266	+		IAI47_21340	0.72	-0.6
3,327	-		IAI47_21340	0.77	+1.4
3,358	+		IAI47_21340	0.80	-0.8
3,359	-		IAI47_21340	0.80	-0.2
3,359	-		IAI47_21340	0.80	+0.1
3,378	+		IAI47_21340	0.81	+0.3
3,378	+		IAI47_21340	0.81	-0.4
3,378	+		IAI47_21340	0.81	-1.7
3,379	-		IAI47_21340	0.81	+0.5
3,379	-		IAI47_21340	0.81	+0.7
3,379	-		IAI47_21340	0.81	-0.9
3,383	+		IAI47_21340	0.82	-2.2
3,383	+		IAI47_21340	0.82	-0.0
3,383	+		IAI47_21340	0.82	-0.9
3,383	+		IAI47_21340	0.82	-1.5
3,383	+		IAI47_21340	0.82	-0.6
3,383	+		IAI47_21340	0.82	+0.9
3,383	+		IAI47_21340	0.82	-2.9
3,383	+		IAI47_21340	0.82	+4.5
3,383	+		IAI47_21340	0.82	-0.4
3,383	+		IAI47_21340	0.82	+1.2
3,383	+		IAI47_21340	0.82	-1.4
3,384	-		IAI47_21340	0.82	-2.0
3,384	-		IAI47_21340	0.82	-0.9
3,384	-		IAI47_21340	0.82	-0.8
3,384	-		IAI47_21340	0.82	-0.6
3,384	-		IAI47_21340	0.82	-0.6
3,384	-		IAI47_21340	0.82	+1.0
3,384	-		IAI47_21340	0.82	-0.8
3,384	-		IAI47_21340	0.82	+3.0
3,384	-		IAI47_21340	0.82	+0.5
3,415	+		IAI47_21340	0.84	-1.2
3,415	+		IAI47_21340	0.84	-1.6
3,416	-		IAI47_21340	0.85	+0.8
3,474	-		IAI47_21340	0.89	+0.3
3,474	-		IAI47_21340	0.89	+3.4
3,474	-		IAI47_21340	0.89	-0.2
3,477	+		IAI47_21340	0.90	-0.4
3,478	-		IAI47_21340	0.90	-2.4
3,480	+		IAI47_21340	0.90	+1.0
3,481	-				-1.9
3,481	-				+0.8
3,507	-				+0.8
3,507	-				+0.6
3,510	+				-0.9
3,510	+				+0.0
3,510	+				+1.0
3,511	-				+1.6
3,569	+				+1.1
3,569	+				+2.2
3,570	-				-2.0
3,570	-				+0.5
3,570	-				+1.1
3,570	-				-0.5
3,570	-				+1.4
3,585	+				-3.2
3,585	+				-0.5
3,585	+				-1.9
3,585	+				-0.9
3,585	+				-0.9
3,586	-				+2.0
3,586	-				+0.1
3,590	+				-1.2
3,591	-				+1.9
3,614	+				-3.1
3,614	+				+0.6
3,614	+				-0.8
3,614	+				+1.3
3,614	+				+1.1
3,614	+				-0.8
3,614	+				-0.3
3,614	+				+0.1
3,614	+				+1.1
3,614	+				+1.1
3,614	+				-0.2
3,615	-				+0.4
3,615	-				+1.9
3,615	-				+0.9
3,615	-				+0.3
3,615	-				-1.4
3,616	+				-1.9
3,616	+				-0.2
3,616	+				-1.3
3,617	-				+1.7
3,617	-				-1.6
3,617	-				-1.4
3,617	-				+1.9
3,617	-				+2.0
3,617	-				-2.2
3,629	+				-0.2
3,636	+				+0.7
3,636	+				-0.6
3,637	-				-0.1
3,649	+				+1.7
3,649	+				+0.1
3,649	+				+2.4
3,649	+				-0.2
3,650	-				-2.4
3,650	-				-0.8
3,664	+				-1.7
3,665	-				-0.6
3,665	-				+2.1
3,665	-				+0.2
3,668	+				+3.4
3,668	+				+0.8
3,669	-				+0.4
3,669	-				+0.7
3,669	-				-0.5
3,669	-				-1.5
3,669	-				+1.9
3,707	+				-0.2
3,707	+				-0.9
3,707	+				+0.4
3,707	+				-0.7
3,713	+				-1.7
3,741	+				+0.2
3,754	+				-0.0
3,754	+				-0.6
3,755	-				-0.9
3,755	-				-0.1
3,755	-				-2.3
3,757	+				+0.4
3,795	+				-2.5
3,795	+				+3.4
3,795	+				-0.7
3,796	-				+0.4
3,796	-				+1.1
3,796	-				-0.7
3,796	-				-0.8
3,796	-				+1.1
3,796	-				-0.2
3,796	-				-2.2
3,796	-				+2.4
3,796	-				+0.4
3,799	+				-0.9
3,799	+				-1.4
3,799	+				-1.7
3,799	+				-0.5
3,799	+				-0.7
3,799	+				+0.5
3,800	-				-0.5
3,800	-				-1.6
3,800	-				-3.0
3,800	-				-1.0
3,800	-				-1.2
3,800	-				+0.2
3,800	-				+1.0
3,800	-				+0.8
3,800	-				-1.4
3,802	+				-0.9
3,802	+				-0.6
3,817	+				-0.6
3,817	+				-0.3
3,817	+				-1.9
3,834	+				-0.4
3,835	-				+0.7
3,835	-				-2.6
3,837	+				+0.3
3,838	-				-0.9
3,838	-				+0.3
3,846	-				-3.5
3,853	-				-0.2
3,853	-				-0.1
3,856	+				-1.2
3,856	+				-0.0
3,856	+				-0.4
3,856	+				-0.2
3,857	-				-0.7
3,857	-				+0.3
3,876	+		IAI47_21345	0.12	-0.3
3,876	+		IAI47_21345	0.12	+0.4
3,877	-		IAI47_21345	0.13	-1.7
3,877	-		IAI47_21345	0.13	-2.3
3,910	+		IAI47_21345	0.29	-0.9
3,910	+		IAI47_21345	0.29	+0.1
3,911	-		IAI47_21345	0.29	+0.0
3,912	+		IAI47_21345	0.29	-0.9
3,913	-		IAI47_21345	0.30	-0.5
3,913	-		IAI47_21345	0.30	-0.9
3,913	-		IAI47_21345	0.30	-0.1
3,988	+		IAI47_21345	0.66	+1.3
3,988	+		IAI47_21345	0.66	-1.5
3,988	+		IAI47_21345	0.66	-1.6
3,988	+		IAI47_21345	0.66	+1.2
3,988	+		IAI47_21345	0.66	-1.4
3,988	+		IAI47_21345	0.66	-2.0
3,989	-		IAI47_21345	0.67	-2.4
3,989	-		IAI47_21345	0.67	-2.3
3,989	-		IAI47_21345	0.67	+1.4
3,989	-		IAI47_21345	0.67	-1.0
3,989	-		IAI47_21345	0.67	-0.9
3,989	-		IAI47_21345	0.67	+1.5
3,989	-		IAI47_21345	0.67	-0.4
3,989	-		IAI47_21345	0.67	-1.7
3,989	-		IAI47_21345	0.67	-1.7
3,989	-		IAI47_21345	0.67	+0.3
4,006	+		IAI47_21345	0.75	-1.3
4,109	-				-1.6
4,256	+				-1.0
4,256	+				+0.8
4,256	+				-2.0
4,257	-				+1.8
4,273	+				+0.4
4,273	+				+0.0
4,273	+				-1.3
4,273	+				+0.7
4,274	-				-0.8
4,274	-				+1.2
4,274	-				+2.6
4,325	+				-1.4
4,325	+				+0.8
4,325	+				-0.7
4,325	+				-1.3
4,326	-				-2.5
4,326	-				-0.2
4,332	-				+2.8
4,332	-				-0.7
4,355	+				-0.1
4,355	+				-0.1
4,355	+				-0.6
4,390	+				+0.6
4,390	+				+1.4
4,390	+				+0.4
4,390	+				+0.6
4,390	+				+0.5
4,391	-				-0.6
4,391	-				+0.1
4,410	+				-1.4
4,410	+				+0.1
4,411	-				-0.1
4,411	-				-0.9
4,412	+				-0.0
4,413	-				-0.2
4,413	-				+0.6
4,443	+		IAI47_21350	0.11	-0.6
4,443	+		IAI47_21350	0.11	+0.4
4,468	-		IAI47_21350	0.12	-0.2
4,506	+		IAI47_21350	0.14	-1.6
4,506	+		IAI47_21350	0.14	-0.6
4,506	+		IAI47_21350	0.14	+2.0
4,506	+		IAI47_21350	0.14	+0.3
4,506	+		IAI47_21350	0.14	-3.0
4,506	+		IAI47_21350	0.14	-1.0
4,507	-		IAI47_21350	0.14	-1.5
4,507	-		IAI47_21350	0.14	-3.5
4,507	-		IAI47_21350	0.14	-1.6
4,535	+		IAI47_21350	0.16	-2.9
4,535	+		IAI47_21350	0.16	+0.0
4,535	+		IAI47_21350	0.16	+0.7
4,536	-		IAI47_21350	0.16	+0.7
4,536	-		IAI47_21350	0.16	+1.2
4,545	+		IAI47_21350	0.16	-3.0
4,545	+		IAI47_21350	0.16	-0.9
4,546	-		IAI47_21350	0.16	+1.2
4,546	-		IAI47_21350	0.16	-1.2
4,546	-		IAI47_21350	0.16	-0.3
4,597	+		IAI47_21350	0.19	+0.4
4,598	-		IAI47_21350	0.19	+2.4
4,638	+		IAI47_21350	0.21	-0.6
4,639	-		IAI47_21350	0.22	+0.1
4,639	-		IAI47_21350	0.22	-0.9
4,639	-		IAI47_21350	0.22	-0.8
4,639	-		IAI47_21350	0.22	+0.7
4,749	+		IAI47_21350	0.28	-1.7
4,750	-		IAI47_21350	0.28	-1.9
4,756	+		IAI47_21350	0.28	-0.6
4,756	+		IAI47_21350	0.28	+2.3
4,757	-		IAI47_21350	0.28	-0.6
4,757	-		IAI47_21350	0.28	-0.6
4,777	-		IAI47_21350	0.29	-0.3
4,777	-		IAI47_21350	0.29	-0.4
4,782	+		IAI47_21350	0.30	-0.2
4,782	+		IAI47_21350	0.30	-0.2
4,782	+		IAI47_21350	0.30	-1.4
4,782	+		IAI47_21350	0.30	+2.4
4,783	-		IAI47_21350	0.30	-0.8
4,785	+		IAI47_21350	0.30	-0.4
4,786	-		IAI47_21350	0.30	-2.0
4,786	-		IAI47_21350	0.30	+0.9
4,837	+		IAI47_21350	0.33	-1.7
4,838	-		IAI47_21350	0.33	+0.8
4,838	-		IAI47_21350	0.33	+1.3
4,846	+		IAI47_21350	0.33	-1.5
4,846	+		IAI47_21350	0.33	-0.0
4,846	+		IAI47_21350	0.33	+1.0
4,846	+		IAI47_21350	0.33	+1.7
4,847	-		IAI47_21350	0.33	-0.9
4,847	-		IAI47_21350	0.33	-0.2
4,847	-		IAI47_21350	0.33	-0.7
4,847	-		IAI47_21350	0.33	+0.6
4,921	-		IAI47_21350	0.37	+0.1
4,921	-		IAI47_21350	0.37	+0.2
4,945	-		IAI47_21350	0.39	+0.1
4,973	+		IAI47_21350	0.40	+0.7
4,973	+		IAI47_21350	0.40	-2.3
4,973	+		IAI47_21350	0.40	-1.2
4,974	-		IAI47_21350	0.40	-1.2
4,974	-		IAI47_21350	0.40	-0.2
4,974	-		IAI47_21350	0.40	+0.8
4,974	-		IAI47_21350	0.40	-0.3
4,974	-		IAI47_21350	0.40	-0.2
4,974	-		IAI47_21350	0.40	-2.4
4,974	-		IAI47_21350	0.40	-1.5
4,982	+		IAI47_21350	0.41	-0.2
4,982	+		IAI47_21350	0.41	+3.3
4,982	+		IAI47_21350	0.41	-0.6
4,982	+		IAI47_21350	0.41	-0.2
4,982	+		IAI47_21350	0.41	-1.6
4,982	+		IAI47_21350	0.41	-1.0
4,982	+		IAI47_21350	0.41	+0.4
4,982	+		IAI47_21350	0.41	+0.6
4,982	+		IAI47_21350	0.41	-2.3
4,982	+		IAI47_21350	0.41	+1.2
4,982	+		IAI47_21350	0.41	-1.4
4,982	+		IAI47_21350	0.41	+0.2
4,982	+		IAI47_21350	0.41	-0.1
4,982	+		IAI47_21350	0.41	+1.4
4,982	+		IAI47_21350	0.41	-1.4
4,982	+		IAI47_21350	0.41	-0.4
4,982	+		IAI47_21350	0.41	-0.0
4,983	-		IAI47_21350	0.41	-0.9
4,983	-		IAI47_21350	0.41	-2.2
4,983	-		IAI47_21350	0.41	-2.0
4,983	-		IAI47_21350	0.41	-1.2
4,983	-		IAI47_21350	0.41	+0.9
4,983	-		IAI47_21350	0.41	-1.7
4,983	-		IAI47_21350	0.41	+0.1
4,983	-		IAI47_21350	0.41	-2.3
4,983	-		IAI47_21350	0.41	-1.7
4,983	-		IAI47_21350	0.41	-0.5
4,983	-		IAI47_21350	0.41	-2.0
4,983	-		IAI47_21350	0.41	+1.6
4,983	-		IAI47_21350	0.41	+0.8
4,993	-		IAI47_21350	0.41	+1.8
5,002	+		IAI47_21350	0.42	+2.2
5,002	+		IAI47_21350	0.42	-0.2
5,003	-		IAI47_21350	0.42	-1.6
5,014	-		IAI47_21350	0.43	-1.6