Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21075 and IAI47_21080 are separated by 398 nucleotides IAI47_21080 and IAI47_21085 are separated by 204 nucleotides
IAI47_21075: IAI47_21075 - tryptophan permease, at 462,556 to 463,800
_21075
IAI47_21080: IAI47_21080 - transposase, at 464,199 to 464,411
_21080
IAI47_21085: IAI47_21085 - amidohydrolase family protein, at 464,616 to 466,013
_21085
Position (kb) 464
465 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 463.203 kb on + strand, within IAI47_21075 at 463.203 kb on + strand, within IAI47_21075 at 463.204 kb on - strand, within IAI47_21075 at 463.204 kb on - strand, within IAI47_21075 at 463.204 kb on - strand, within IAI47_21075 at 463.204 kb on - strand, within IAI47_21075 at 463.207 kb on + strand, within IAI47_21075 at 463.207 kb on + strand, within IAI47_21075 at 463.207 kb on + strand, within IAI47_21075 at 463.207 kb on + strand, within IAI47_21075 at 463.207 kb on + strand, within IAI47_21075 at 463.208 kb on - strand, within IAI47_21075 at 463.208 kb on - strand, within IAI47_21075 at 463.210 kb on + strand, within IAI47_21075 at 463.210 kb on + strand, within IAI47_21075 at 463.210 kb on + strand, within IAI47_21075 at 463.210 kb on + strand, within IAI47_21075 at 463.210 kb on + strand, within IAI47_21075 at 463.211 kb on - strand, within IAI47_21075 at 463.211 kb on - strand, within IAI47_21075 at 463.211 kb on - strand, within IAI47_21075 at 463.211 kb on - strand, within IAI47_21075 at 463.211 kb on - strand, within IAI47_21075 at 463.211 kb on - strand, within IAI47_21075 at 463.211 kb on - strand, within IAI47_21075 at 463.211 kb on - strand, within IAI47_21075 at 463.238 kb on + strand, within IAI47_21075 at 463.238 kb on + strand, within IAI47_21075 at 463.247 kb on - strand, within IAI47_21075 at 463.247 kb on - strand, within IAI47_21075 at 463.272 kb on + strand, within IAI47_21075 at 463.272 kb on + strand, within IAI47_21075 at 463.273 kb on - strand, within IAI47_21075 at 463.277 kb on - strand, within IAI47_21075 at 463.277 kb on - strand, within IAI47_21075 at 463.277 kb on - strand, within IAI47_21075 at 463.377 kb on + strand, within IAI47_21075 at 463.392 kb on + strand, within IAI47_21075 at 463.392 kb on + strand, within IAI47_21075 at 463.392 kb on + strand, within IAI47_21075 at 463.422 kb on - strand, within IAI47_21075 at 463.440 kb on + strand, within IAI47_21075 at 463.441 kb on - strand, within IAI47_21075 at 463.441 kb on - strand, within IAI47_21075 at 463.480 kb on + strand, within IAI47_21075 at 463.481 kb on - strand, within IAI47_21075 at 463.481 kb on - strand, within IAI47_21075 at 463.594 kb on - strand, within IAI47_21075 at 463.607 kb on - strand, within IAI47_21075 at 463.607 kb on - strand, within IAI47_21075 at 463.652 kb on + strand, within IAI47_21075 at 463.653 kb on - strand, within IAI47_21075 at 463.653 kb on - strand, within IAI47_21075 at 463.681 kb on + strand at 463.681 kb on + strand at 463.682 kb on - strand at 463.691 kb on - strand at 463.731 kb on + strand at 463.731 kb on + strand at 463.731 kb on + strand at 463.732 kb on - strand at 463.732 kb on - strand at 463.737 kb on - strand at 463.793 kb on + strand at 463.794 kb on - strand at 463.798 kb on + strand at 463.798 kb on + strand at 463.799 kb on - strand at 463.826 kb on - strand at 463.826 kb on - strand at 463.828 kb on + strand at 463.829 kb on - strand at 463.850 kb on + strand at 463.862 kb on + strand at 463.862 kb on + strand at 463.862 kb on + strand at 463.863 kb on - strand at 463.891 kb on + strand at 463.891 kb on + strand at 463.891 kb on + strand at 463.892 kb on - strand at 463.958 kb on + strand at 463.958 kb on + strand at 463.958 kb on + strand at 463.958 kb on + strand at 463.958 kb on + strand at 463.958 kb on + strand at 463.958 kb on + strand at 463.958 kb on + strand at 463.958 kb on + strand at 463.959 kb on - strand at 463.959 kb on - strand at 463.959 kb on - strand at 463.959 kb on - strand at 463.959 kb on - strand at 463.962 kb on + strand at 463.962 kb on + strand at 463.962 kb on + strand at 463.962 kb on + strand at 463.962 kb on + strand at 463.962 kb on + strand at 463.962 kb on + strand at 463.962 kb on + strand at 463.963 kb on - strand at 463.963 kb on - strand at 463.963 kb on - strand at 463.963 kb on - strand at 463.963 kb on - strand at 463.963 kb on - strand at 463.963 kb on - strand at 463.966 kb on + strand at 463.966 kb on + strand at 463.967 kb on - strand at 463.985 kb on + strand at 463.986 kb on - strand at 463.989 kb on - strand at 463.989 kb on - strand at 463.995 kb on + strand at 464.007 kb on + strand at 464.036 kb on + strand at 464.055 kb on + strand at 464.056 kb on - strand at 464.059 kb on - strand at 464.059 kb on - strand at 464.059 kb on - strand at 464.059 kb on - strand at 464.059 kb on - strand at 464.059 kb on - strand at 464.060 kb on + strand at 464.060 kb on + strand at 464.060 kb on + strand at 464.061 kb on - strand at 464.061 kb on - strand at 464.073 kb on - strand at 464.073 kb on - strand at 464.101 kb on - strand at 464.114 kb on + strand at 464.114 kb on + strand at 464.114 kb on + strand at 464.114 kb on + strand at 464.115 kb on - strand at 464.115 kb on - strand at 464.115 kb on - strand at 464.115 kb on - strand at 464.129 kb on + strand at 464.129 kb on + strand at 464.129 kb on + strand at 464.129 kb on + strand at 464.142 kb on + strand at 464.142 kb on + strand at 464.143 kb on - strand at 464.143 kb on - strand at 464.143 kb on - strand at 464.333 kb on + strand, within IAI47_21080 at 464.333 kb on + strand, within IAI47_21080 at 464.333 kb on + strand, within IAI47_21080 at 464.334 kb on - strand, within IAI47_21080 at 464.334 kb on - strand, within IAI47_21080 at 464.334 kb on - strand, within IAI47_21080 at 464.334 kb on - strand at 464.365 kb on + strand, within IAI47_21080 at 464.365 kb on + strand, within IAI47_21080 at 464.365 kb on + strand, within IAI47_21080 at 464.365 kb on + strand, within IAI47_21080 at 464.366 kb on - strand, within IAI47_21080 at 464.366 kb on - strand, within IAI47_21080 at 464.366 kb on - strand, within IAI47_21080 at 464.366 kb on - strand, within IAI47_21080 at 464.366 kb on - strand, within IAI47_21080 at 464.416 kb on + strand at 464.417 kb on - strand at 464.426 kb on + strand at 464.426 kb on + strand at 464.427 kb on - strand at 464.438 kb on + strand at 464.438 kb on + strand at 464.439 kb on - strand at 464.439 kb on - strand at 464.465 kb on + strand at 464.465 kb on + strand at 464.465 kb on + strand at 464.476 kb on + strand at 464.505 kb on + strand at 464.543 kb on + strand at 464.543 kb on + strand at 464.543 kb on + strand at 464.543 kb on + strand at 464.544 kb on - strand at 464.544 kb on - strand at 464.595 kb on + strand at 464.614 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.631 kb on - strand at 464.631 kb on - strand at 464.668 kb on + strand at 464.668 kb on + strand at 464.668 kb on + strand at 464.668 kb on + strand at 464.867 kb on + strand, within IAI47_21085 at 464.969 kb on + strand, within IAI47_21085 at 464.969 kb on + strand, within IAI47_21085 at 464.969 kb on + strand, within IAI47_21085 at 464.970 kb on - strand, within IAI47_21085 at 464.970 kb on - strand, within IAI47_21085 at 465.005 kb on + strand, within IAI47_21085 at 465.005 kb on + strand, within IAI47_21085 at 465.006 kb on - strand, within IAI47_21085 at 465.020 kb on + strand, within IAI47_21085 at 465.020 kb on + strand, within IAI47_21085 at 465.020 kb on + strand, within IAI47_21085 at 465.020 kb on + strand, within IAI47_21085 at 465.021 kb on - strand, within IAI47_21085 at 465.021 kb on - strand, within IAI47_21085 at 465.021 kb on - strand, within IAI47_21085 at 465.021 kb on - strand, within IAI47_21085 at 465.021 kb on - strand, within IAI47_21085 at 465.026 kb on + strand, within IAI47_21085 at 465.026 kb on + strand, within IAI47_21085 at 465.027 kb on - strand, within IAI47_21085 at 465.046 kb on + strand, within IAI47_21085 at 465.046 kb on + strand, within IAI47_21085 at 465.047 kb on - strand, within IAI47_21085 at 465.069 kb on - strand, within IAI47_21085 at 465.069 kb on - strand, within IAI47_21085 at 465.074 kb on + strand, within IAI47_21085 at 465.075 kb on - strand, within IAI47_21085 at 465.075 kb on - strand, within IAI47_21085 at 465.075 kb on - strand, within IAI47_21085 at 465.085 kb on + strand, within IAI47_21085 at 465.085 kb on + strand, within IAI47_21085 at 465.107 kb on + strand, within IAI47_21085 at 465.108 kb on - strand, within IAI47_21085 at 465.172 kb on + strand, within IAI47_21085 at 465.173 kb on - strand, within IAI47_21085 at 465.173 kb on - strand, within IAI47_21085 at 465.173 kb on - strand, within IAI47_21085 at 465.173 kb on - strand, within IAI47_21085 at 465.173 kb on - strand, within IAI47_21085 at 465.173 kb on - strand, within IAI47_21085 at 465.263 kb on + strand, within IAI47_21085 at 465.263 kb on + strand, within IAI47_21085 at 465.264 kb on - strand, within IAI47_21085 at 465.269 kb on + strand, within IAI47_21085 at 465.269 kb on + strand, within IAI47_21085 at 465.269 kb on + strand, within IAI47_21085
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 463,203 + IAI47_21075 0.52 +1.2 463,203 + IAI47_21075 0.52 +0.8 463,204 - IAI47_21075 0.52 -0.6 463,204 - IAI47_21075 0.52 -1.6 463,204 - IAI47_21075 0.52 +0.6 463,204 - IAI47_21075 0.52 -1.2 463,207 + IAI47_21075 0.52 -2.6 463,207 + IAI47_21075 0.52 -1.1 463,207 + IAI47_21075 0.52 -1.5 463,207 + IAI47_21075 0.52 -0.7 463,207 + IAI47_21075 0.52 +0.1 463,208 - IAI47_21075 0.52 +1.2 463,208 - IAI47_21075 0.52 +1.0 463,210 + IAI47_21075 0.53 +0.8 463,210 + IAI47_21075 0.53 +1.4 463,210 + IAI47_21075 0.53 -1.3 463,210 + IAI47_21075 0.53 +0.9 463,210 + IAI47_21075 0.53 -1.4 463,211 - IAI47_21075 0.53 +0.6 463,211 - IAI47_21075 0.53 +0.3 463,211 - IAI47_21075 0.53 +3.9 463,211 - IAI47_21075 0.53 +0.3 463,211 - IAI47_21075 0.53 -2.2 463,211 - IAI47_21075 0.53 -0.2 463,211 - IAI47_21075 0.53 -2.2 463,211 - IAI47_21075 0.53 +0.8 463,238 + IAI47_21075 0.55 +1.2 463,238 + IAI47_21075 0.55 +0.5 463,247 - IAI47_21075 0.56 +0.4 463,247 - IAI47_21075 0.56 +0.4 463,272 + IAI47_21075 0.58 +1.9 463,272 + IAI47_21075 0.58 -0.4 463,273 - IAI47_21075 0.58 -0.2 463,277 - IAI47_21075 0.58 +0.7 463,277 - IAI47_21075 0.58 -1.8 463,277 - IAI47_21075 0.58 -2.6 463,377 + IAI47_21075 0.66 +1.0 463,392 + IAI47_21075 0.67 +1.7 463,392 + IAI47_21075 0.67 -0.1 463,392 + IAI47_21075 0.67 -0.6 463,422 - IAI47_21075 0.70 +0.5 463,440 + IAI47_21075 0.71 -0.4 463,441 - IAI47_21075 0.71 -0.2 463,441 - IAI47_21075 0.71 -0.9 463,480 + IAI47_21075 0.74 +0.2 463,481 - IAI47_21075 0.74 -0.3 463,481 - IAI47_21075 0.74 +0.3 463,594 - IAI47_21075 0.83 -1.2 463,607 - IAI47_21075 0.84 +1.1 463,607 - IAI47_21075 0.84 -0.4 463,652 + IAI47_21075 0.88 -1.2 463,653 - IAI47_21075 0.88 -0.2 463,653 - IAI47_21075 0.88 -0.3 463,681 + -0.2 463,681 + -1.9 463,682 - -1.8 463,691 - -0.6 463,731 + +0.2 463,731 + +1.4 463,731 + +0.3 463,732 - +0.2 463,732 - +3.2 463,737 - +1.8 463,793 + +1.3 463,794 - -1.9 463,798 + -1.4 463,798 + +0.7 463,799 - -0.2 463,826 - -1.4 463,826 - +0.4 463,828 + -1.1 463,829 - +0.3 463,850 + -3.9 463,862 + -1.8 463,862 + -0.2 463,862 + -1.8 463,863 - +1.0 463,891 + +1.0 463,891 + +0.9 463,891 + -0.0 463,892 - -0.3 463,958 + -0.9 463,958 + -0.0 463,958 + +0.2 463,958 + -0.1 463,958 + +1.2 463,958 + +1.0 463,958 + -0.8 463,958 + +1.6 463,958 + +0.2 463,959 - +1.4 463,959 - +1.0 463,959 - -1.6 463,959 - +0.4 463,959 - +0.6 463,962 + -1.9 463,962 + -1.9 463,962 + +1.6 463,962 + -0.8 463,962 + -1.2 463,962 + +0.8 463,962 + -0.6 463,962 + -1.4 463,963 - +0.3 463,963 - -2.2 463,963 - +1.2 463,963 - +0.6 463,963 - -0.4 463,963 - -0.4 463,963 - -0.2 463,966 + +0.7 463,966 + -0.3 463,967 - -1.4 463,985 + +1.1 463,986 - +2.4 463,989 - -0.2 463,989 - +3.2 463,995 + +1.7 464,007 + -1.4 464,036 + +1.0 464,055 + +3.3 464,056 - -1.0 464,059 - -0.6 464,059 - +1.0 464,059 - -0.1 464,059 - -3.0 464,059 - +0.9 464,059 - +0.6 464,060 + +1.0 464,060 + +0.3 464,060 + -2.2 464,061 - +0.5 464,061 - +0.7 464,073 - +1.7 464,073 - -2.6 464,101 - -0.2 464,114 + +0.1 464,114 + -1.4 464,114 + -1.9 464,114 + +1.6 464,115 - +1.1 464,115 - +0.6 464,115 - -1.6 464,115 - +0.1 464,129 + +0.4 464,129 + +1.9 464,129 + -0.3 464,129 + -2.5 464,142 + -1.2 464,142 + +1.8 464,143 - +0.1 464,143 - -1.4 464,143 - +1.0 464,333 + IAI47_21080 0.63 -1.4 464,333 + IAI47_21080 0.63 -0.2 464,333 + IAI47_21080 0.63 +0.5 464,334 - IAI47_21080 0.63 +1.0 464,334 - IAI47_21080 0.63 +1.2 464,334 - IAI47_21080 0.63 +0.4 464,334 - +2.3 464,365 + IAI47_21080 0.78 -0.0 464,365 + IAI47_21080 0.78 -2.4 464,365 + IAI47_21080 0.78 -2.3 464,365 + IAI47_21080 0.78 -0.4 464,366 - IAI47_21080 0.78 -1.4 464,366 - IAI47_21080 0.78 +0.2 464,366 - IAI47_21080 0.78 -2.7 464,366 - IAI47_21080 0.78 -1.1 464,366 - IAI47_21080 0.78 -0.8 464,416 + +1.1 464,417 - +1.4 464,426 + -0.6 464,426 + -0.1 464,427 - -2.6 464,438 + +1.4 464,438 + -2.7 464,439 - -0.9 464,439 - +1.4 464,465 + +2.4 464,465 + +1.8 464,465 + -1.4 464,476 + -0.2 464,505 + -0.1 464,543 + -0.7 464,543 + -0.2 464,543 + +0.6 464,543 + +1.5 464,544 - +0.9 464,544 - -3.7 464,595 + +1.6 464,614 + -0.1 464,630 + +1.9 464,630 + -0.7 464,630 + +1.9 464,630 + -1.4 464,630 + -2.6 464,630 + -1.3 464,631 - -0.9 464,631 - +0.4 464,668 + +0.4 464,668 + +0.6 464,668 + +3.9 464,668 + -1.4 464,867 + IAI47_21085 0.18 +2.7 464,969 + IAI47_21085 0.25 +1.0 464,969 + IAI47_21085 0.25 +1.8 464,969 + IAI47_21085 0.25 -0.9 464,970 - IAI47_21085 0.25 -0.3 464,970 - IAI47_21085 0.25 -0.5 465,005 + IAI47_21085 0.28 -1.1 465,005 + IAI47_21085 0.28 -3.1 465,006 - IAI47_21085 0.28 -0.3 465,020 + IAI47_21085 0.29 -0.9 465,020 + IAI47_21085 0.29 -1.0 465,020 + IAI47_21085 0.29 -1.6 465,020 + IAI47_21085 0.29 -0.2 465,021 - IAI47_21085 0.29 -0.8 465,021 - IAI47_21085 0.29 +0.4 465,021 - IAI47_21085 0.29 +0.2 465,021 - IAI47_21085 0.29 -0.0 465,021 - IAI47_21085 0.29 -0.0 465,026 + IAI47_21085 0.29 -2.1 465,026 + IAI47_21085 0.29 -0.2 465,027 - IAI47_21085 0.29 -3.3 465,046 + IAI47_21085 0.31 +3.0 465,046 + IAI47_21085 0.31 -0.3 465,047 - IAI47_21085 0.31 -2.8 465,069 - IAI47_21085 0.32 +0.7 465,069 - IAI47_21085 0.32 +4.0 465,074 + IAI47_21085 0.33 -0.5 465,075 - IAI47_21085 0.33 +0.9 465,075 - IAI47_21085 0.33 -1.8 465,075 - IAI47_21085 0.33 -3.0 465,085 + IAI47_21085 0.34 +0.9 465,085 + IAI47_21085 0.34 -1.4 465,107 + IAI47_21085 0.35 -2.3 465,108 - IAI47_21085 0.35 +0.4 465,172 + IAI47_21085 0.40 -1.1 465,173 - IAI47_21085 0.40 +1.0 465,173 - IAI47_21085 0.40 -0.2 465,173 - IAI47_21085 0.40 +0.1 465,173 - IAI47_21085 0.40 -0.6 465,173 - IAI47_21085 0.40 +0.4 465,173 - IAI47_21085 0.40 +1.2 465,263 + IAI47_21085 0.46 -1.4 465,263 + IAI47_21085 0.46 -0.9 465,264 - IAI47_21085 0.46 -1.4 465,269 + IAI47_21085 0.47 +0.5 465,269 + IAI47_21085 0.47 -0.4 465,269 + IAI47_21085 0.47 -0.4
Or see this region's nucleotide sequence