Strain Fitness in Pantoea sp. MT58 around IAI47_18755

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,998,822	+				-0.1
3,998,860	+				+0.3
3,998,860	+				+1.5
3,998,860	+				-1.0
3,998,861	-				-0.5
3,998,861	-				+1.7
3,998,866	+				-1.5
3,998,866	+				+0.3
3,998,866	+				-2.3
3,998,866	+				+0.2
3,998,866	+				+1.7
3,998,867	-				+0.1
3,998,867	-				-0.9
3,998,867	-				-1.4
3,998,867	-				+0.9
3,998,867	-				-0.4
3,998,868	+				-3.4
3,998,869	-				-2.1
3,998,952	+		IAI47_18750	0.10	-1.6
3,998,953	-		IAI47_18750	0.11	-1.1
3,998,953	-		IAI47_18750	0.11	+0.4
3,998,955	-		IAI47_18750	0.11	-0.3
3,999,012	-		IAI47_18750	0.17	-2.0
3,999,059	+		IAI47_18750	0.22	-1.6
3,999,059	+		IAI47_18750	0.22	-0.5
3,999,059	+		IAI47_18750	0.22	-0.8
3,999,059	+		IAI47_18750	0.22	+0.2
3,999,059	+		IAI47_18750	0.22	-0.5
3,999,059	+		IAI47_18750	0.22	-0.0
3,999,059	+		IAI47_18750	0.22	-0.1
3,999,060	-		IAI47_18750	0.22	-0.9
3,999,060	-		IAI47_18750	0.22	+1.7
3,999,060	-		IAI47_18750	0.22	-0.1
3,999,060	-		IAI47_18750	0.22	-3.4
3,999,060	-		IAI47_18750	0.22	-0.9
3,999,060	-		IAI47_18750	0.22	-0.8
3,999,060	-		IAI47_18750	0.22	+0.0
3,999,060	-		IAI47_18750	0.22	-1.0
3,999,139	+		IAI47_18750	0.31	+1.1
3,999,139	+		IAI47_18750	0.31	+0.4
3,999,139	+		IAI47_18750	0.31	+2.0
3,999,140	-		IAI47_18750	0.31	-0.1
3,999,140	-		IAI47_18750	0.31	-0.5
3,999,299	+		IAI47_18750	0.48	+0.8
3,999,299	+		IAI47_18750	0.48	+0.0
3,999,299	+		IAI47_18750	0.48	+0.2
3,999,299	+		IAI47_18750	0.48	+0.8
3,999,319	+		IAI47_18750	0.50	+2.2
3,999,319	+		IAI47_18750	0.50	+0.2
3,999,320	-		IAI47_18750	0.50	+0.3
3,999,332	-		IAI47_18750	0.52	-3.2
3,999,332	-		IAI47_18750	0.52	-1.5
3,999,332	-		IAI47_18750	0.52	+0.1
3,999,354	-		IAI47_18750	0.54	-1.0
3,999,354	-		IAI47_18750	0.54	+0.2
3,999,439	+		IAI47_18750	0.63	-0.1
3,999,440	-		IAI47_18750	0.63	-2.5
3,999,440	-		IAI47_18750	0.63	-0.2
3,999,440	-		IAI47_18750	0.63	+1.2
3,999,440	-		IAI47_18750	0.63	-1.4
3,999,463	+		IAI47_18750	0.66	+2.1
3,999,464	-		IAI47_18750	0.66	+2.0
3,999,464	-		IAI47_18750	0.66	-1.0
3,999,464	-		IAI47_18750	0.66	+0.6
3,999,488	+		IAI47_18750	0.69	-1.2
3,999,489	-		IAI47_18750	0.69	+3.3
3,999,489	-		IAI47_18750	0.69	+0.0
3,999,541	+		IAI47_18750	0.74	-0.5
3,999,542	-		IAI47_18750	0.74	+0.6
3,999,542	-		IAI47_18750	0.74	+0.5
3,999,542	-		IAI47_18750	0.74	+2.5
3,999,542	-		IAI47_18750	0.74	-2.2
3,999,572	+		IAI47_18750	0.78	+0.9
3,999,572	+		IAI47_18750	0.78	-0.3
3,999,572	+		IAI47_18750	0.78	+1.3
3,999,572	+		IAI47_18750	0.78	+1.3
3,999,572	+		IAI47_18750	0.78	+0.2
3,999,573	-		IAI47_18750	0.78	-1.5
3,999,573	-		IAI47_18750	0.78	+0.9
3,999,573	-		IAI47_18750	0.78	+0.9
3,999,635	+		IAI47_18750	0.84	+0.9
3,999,635	+		IAI47_18750	0.84	+0.1
3,999,636	-		IAI47_18750	0.85	+0.2
3,999,636	-		IAI47_18750	0.85	-0.1
3,999,636	-		IAI47_18750	0.85	+2.2
3,999,636	-		IAI47_18750	0.85	+2.1
3,999,636	-		IAI47_18750	0.85	-0.3
3,999,650	+		IAI47_18750	0.86	+0.2
3,999,650	+		IAI47_18750	0.86	-3.2
3,999,651	-		IAI47_18750	0.86	+1.7
3,999,651	-				+1.8
3,999,651	-		IAI47_18750	0.86	+3.4
3,999,705	+				-0.5
3,999,760	+				+0.6
3,999,760	+				+1.7
3,999,760	+				-1.0
3,999,760	+				-0.1
3,999,761	-				-0.6
3,999,761	-				-0.6
3,999,776	+				-1.9
3,999,777	-				-0.4
3,999,777	-				-2.2
3,999,818	+				-1.3
3,999,818	+				-1.1
3,999,818	+				-1.7
3,999,818	+				-0.6
3,999,818	+				+1.2
3,999,818	+				-0.8
3,999,818	+				-2.9
3,999,818	+				-0.9
3,999,819	-				+2.1
3,999,819	-				-2.2
3,999,819	-				-0.1
3,999,819	-				+1.4
3,999,820	+				-1.5
3,999,820	+				-1.7
3,999,820	+				-0.1
3,999,820	+				+0.6
3,999,821	-				+0.3
3,999,821	-				+0.6
3,999,821	-				-2.5
3,999,838	+				-3.1
3,999,838	+				-2.0
3,999,839	-				-0.9
3,999,850	+				-1.3
3,999,886	+		IAI47_18755	0.14	-1.3
3,999,899	+		IAI47_18755	0.16	+1.3
3,999,926	+		IAI47_18755	0.21	-0.8
3,999,926	+		IAI47_18755	0.21	+0.1
3,999,926	+		IAI47_18755	0.21	-0.4
3,999,927	-		IAI47_18755	0.21	-1.1
3,999,927	-		IAI47_18755	0.21	+0.4
3,999,927	-		IAI47_18755	0.21	-2.4
3,999,927	-		IAI47_18755	0.21	+0.6
3,999,967	+		IAI47_18755	0.27	+0.3
3,999,968	-		IAI47_18755	0.27	-0.8
4,000,054	+		IAI47_18755	0.42	+0.5
4,000,054	+		IAI47_18755	0.42	-2.0
4,000,054	+		IAI47_18755	0.42	-2.6
4,000,054	+		IAI47_18755	0.42	-0.1
4,000,189	+		IAI47_18755	0.64	-2.1
4,000,189	+		IAI47_18755	0.64	-0.0
4,000,421	+				-2.0
4,000,421	+				-0.7
4,000,422	-				+0.7
4,000,462	+				-0.4
4,000,462	+				+1.4
4,000,470	+				-0.6
4,000,471	-				-1.0
4,000,471	-				+0.6
4,000,512	+				+2.0
4,000,512	+				+2.2
4,000,512	+				-1.4
4,000,512	+				+0.6
4,000,512	+				+1.0
4,000,512	+				-2.5
4,000,512	+				-1.7
4,000,512	+				+0.9
4,000,512	+				+2.8
4,000,512	+				+0.3
4,000,512	+				+0.7
4,000,512	+				-1.7
4,000,513	-				-0.2
4,000,513	-				+1.6
4,000,513	-				+0.8
4,000,513	-				-0.3
4,000,513	-				-0.4
4,000,513	-				-2.7
4,000,513	-				-1.4
4,000,513	-				+0.1
4,000,513	-				-3.5
4,000,513	-				-0.1
4,000,513	-				+0.9
4,000,513	-				-0.5
4,000,514	+				-0.2
4,000,514	+				+1.9
4,000,514	+				+2.0
4,000,514	+				-0.3
4,000,514	+				+0.6
4,000,514	+				+0.1
4,000,514	+				+0.9
4,000,515	-				+2.3
4,000,515	-				+1.3
4,000,515	-				+1.1
4,000,515	-				-1.7
4,000,515	-				+0.1
4,000,537	+				+0.2
4,000,537	+				+0.8
4,000,537	+				+0.2
4,000,537	+				-1.0
4,000,538	-				+0.7
4,000,538	-				-1.2
4,000,538	-				+1.8
4,000,538	-				-0.6
4,000,538	-				-0.0
4,000,549	+				+0.9
4,000,550	-				-0.7
4,000,550	-				+2.4
4,000,550	-				+0.3
4,000,550	-				-1.3
4,000,570	-				-0.2
4,000,583	+		IAI47_18760	0.12	+0.1
4,000,583	+		IAI47_18760	0.12	-0.7
4,000,583	+		IAI47_18760	0.12	-0.8
4,000,583	+		IAI47_18760	0.12	+0.4
4,000,583	+		IAI47_18760	0.12	-0.4
4,000,583	+		IAI47_18760	0.12	-1.4
4,000,583	+		IAI47_18760	0.12	-0.4
4,000,583	+		IAI47_18760	0.12	+0.9
4,000,583	+		IAI47_18760	0.12	-1.2
4,000,583	+		IAI47_18760	0.12	-0.7
4,000,583	+		IAI47_18760	0.12	+0.3
4,000,583	+		IAI47_18760	0.12	+0.6
4,000,583	+		IAI47_18760	0.12	-1.3
4,000,583	+		IAI47_18760	0.12	+2.2
4,000,583	+		IAI47_18760	0.12	+0.6
4,000,583	+		IAI47_18760	0.12	+1.0
4,000,583	+		IAI47_18760	0.12	+0.4
4,000,583	+		IAI47_18760	0.12	+0.0
4,000,583	+		IAI47_18760	0.12	+1.5
4,000,583	+		IAI47_18760	0.12	-0.0
4,000,583	+		IAI47_18760	0.12	-2.5
4,000,584	-		IAI47_18760	0.12	-0.3
4,000,584	-		IAI47_18760	0.12	+0.5
4,000,584	-		IAI47_18760	0.12	-2.5
4,000,584	-		IAI47_18760	0.12	-2.5
4,000,584	-		IAI47_18760	0.12	-0.7
4,000,584	-		IAI47_18760	0.12	+1.6
4,000,584	-		IAI47_18760	0.12	-1.8
4,000,584	-		IAI47_18760	0.12	-2.2
4,000,584	-		IAI47_18760	0.12	-1.1
4,000,584	-		IAI47_18760	0.12	-1.1
4,000,584	-		IAI47_18760	0.12	-2.2
4,000,584	-		IAI47_18760	0.12	+0.4
4,000,584	-		IAI47_18760	0.12	+2.5
4,000,584	-		IAI47_18760	0.12	-1.4
4,000,584	-		IAI47_18760	0.12	+1.1
4,000,584	-		IAI47_18760	0.12	+1.6
4,000,584	-		IAI47_18760	0.12	-0.1
4,000,584	-		IAI47_18760	0.12	+1.3
4,000,584	-		IAI47_18760	0.12	+0.1
4,000,584	-		IAI47_18760	0.12	+0.8
4,000,584	-		IAI47_18760	0.12	-1.0
4,000,584	-		IAI47_18760	0.12	-1.9
4,000,584	-		IAI47_18760	0.12	+2.1
4,000,584	-		IAI47_18760	0.12	-2.4
4,000,584	-		IAI47_18760	0.12	+1.6
4,000,584	-		IAI47_18760	0.12	-1.4
4,000,584	-		IAI47_18760	0.12	+1.2
4,000,584	-		IAI47_18760	0.12	+0.5
4,000,590	+		IAI47_18760	0.14	+0.6
4,000,591	-		IAI47_18760	0.14	-0.7
4,000,591	-		IAI47_18760	0.14	+0.5
4,000,591	-		IAI47_18760	0.14	+0.8
4,000,591	-		IAI47_18760	0.14	-1.7
4,000,591	-		IAI47_18760	0.14	-0.3
4,000,592	+		IAI47_18760	0.15	+0.6
4,000,592	+		IAI47_18760	0.15	-2.7
4,000,592	+		IAI47_18760	0.15	+0.0
4,000,593	-		IAI47_18760	0.15	-2.9
4,000,593	-		IAI47_18760	0.15	+0.9
4,000,593	-		IAI47_18760	0.15	+0.1
4,000,593	-		IAI47_18760	0.15	-0.2
4,000,601	+		IAI47_18760	0.18	+0.6
4,000,601	+		IAI47_18760	0.18	+2.1
4,000,602	-		IAI47_18760	0.18	+0.3
4,000,627	+		IAI47_18760	0.26	-0.1
4,000,628	-		IAI47_18760	0.27	-1.8
4,000,628	-		IAI47_18760	0.27	+0.2
4,000,638	-		IAI47_18760	0.30	-0.1
4,000,664	+		IAI47_18760	0.39	-0.5
4,000,664	+		IAI47_18760	0.39	+0.3
4,000,664	+		IAI47_18760	0.39	-1.3
4,000,665	-		IAI47_18760	0.39	-3.5
4,000,665	-		IAI47_18760	0.39	-2.1
4,000,727	+		IAI47_18760	0.60	+0.6
4,000,728	-		IAI47_18760	0.60	-1.0
4,000,733	+		IAI47_18760	0.62	-2.6
4,000,739	+		IAI47_18760	0.64	+2.0
4,000,739	+		IAI47_18760	0.64	+0.2
4,000,739	+		IAI47_18760	0.64	-0.8
4,000,739	+		IAI47_18760	0.64	-0.5
4,000,740	-		IAI47_18760	0.64	-1.5
4,000,740	-		IAI47_18760	0.64	-2.0
4,000,740	-		IAI47_18760	0.64	-0.5
4,000,765	-		IAI47_18760	0.72	-0.4
4,000,780	+		IAI47_18760	0.77	-0.1
4,000,781	-		IAI47_18760	0.78	-0.5
4,000,781	-		IAI47_18760	0.78	+2.5
4,000,786	+		IAI47_18760	0.79	-1.4
4,000,787	-		IAI47_18760	0.80	+0.1
4,000,794	+		IAI47_18760	0.82	-1.1
4,000,794	+		IAI47_18760	0.82	-0.2
4,000,794	+		IAI47_18760	0.82	-1.5
4,000,794	+		IAI47_18760	0.82	+1.8
4,000,795	-		IAI47_18760	0.82	-0.7
4,000,795	-		IAI47_18760	0.82	-0.5
4,000,795	-		IAI47_18760	0.82	+3.2
4,000,935	+		IAI47_18765	0.32	+0.9
4,000,935	+		IAI47_18765	0.32	+1.2
4,000,935	+		IAI47_18765	0.32	-1.7
4,000,935	+		IAI47_18765	0.32	+0.8
4,000,935	+		IAI47_18765	0.32	-0.8
4,000,955	+		IAI47_18765	0.39	-1.6
4,000,956	-		IAI47_18765	0.39	-0.5
4,000,956	-		IAI47_18765	0.39	-0.4
4,000,985	-		IAI47_18765	0.49	-1.0
4,000,995	+		IAI47_18765	0.53	-0.4
4,000,996	-		IAI47_18765	0.53	+1.0
4,001,038	+		IAI47_18765	0.68	+0.5
4,001,039	-		IAI47_18765	0.68	-0.5
4,001,119	+				-0.4
4,001,120	-				-2.4
4,001,206	+				+1.8
4,001,206	+				+0.8
4,001,206	+				-1.1
4,001,206	+				-0.4
4,001,206	+				+1.4
4,001,206	+				+0.6
4,001,206	+				+1.9
4,001,206	+				-1.7
4,001,207	-				-3.6
4,001,207	-				-1.9
4,001,207	-				+0.1
4,001,207	-				-1.8
4,001,207	-				+1.7
4,001,207	-				-0.0
4,001,207	-				-0.2
4,001,207	-				+1.6
4,001,207	-				-0.5
4,001,208	+				+0.6
4,001,208	+				+0.9
4,001,208	+				+1.0
4,001,208	+				+0.5
4,001,208	+				+0.7
4,001,208	+				-3.5
4,001,208	+				-0.1
4,001,209	-				+0.4
4,001,209	-				+0.2
4,001,223	+				-0.7
4,001,223	+				-0.8
4,001,223	+				+0.2
4,001,224	-				+0.2
4,001,224	-				-1.0
4,001,224	-				+0.5
4,001,224	-				+0.2
4,001,224	-				+0.8
4,001,247	+				+0.3
4,001,247	+				+1.3
4,001,248	-				-0.4
4,001,248	-				+0.5
4,001,248	-				+1.2
4,001,248	-				-2.3
4,001,248	-				-0.8
4,001,250	+				+0.4
4,001,251	-				-0.7
4,001,251	-				-1.3
4,001,256	+				-0.5
4,001,256	+				-2.3
4,001,256	+				-1.7
4,001,257	-				-0.6
4,001,257	-				-0.2
4,001,286	+				+0.6
4,001,287	-				+0.5
4,001,302	+				+0.0
4,001,327	-				-1.3
4,001,356	+				-0.7
4,001,357	-				-1.4
4,001,357	-				+0.3
4,001,357	-				-1.3
4,001,357	-				+0.1
4,001,359	+				-0.4
4,001,359	+				-0.5
4,001,360	-				+0.2
4,001,360	-				-1.4
4,001,364	-				-0.2
4,001,364	-				-1.0
4,001,379	+				+1.0
4,001,379	+				-0.0
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