Strain Fitness in Pantoea sp. MT58 around IAI47_12320

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,602,700	+		IAI47_12310	0.84	-2.0
2,602,712	+		IAI47_12310	0.85	+0.0
2,602,712	+		IAI47_12310	0.85	+0.2
2,602,713	-		IAI47_12310	0.85	+1.2
2,602,714	+		IAI47_12310	0.85	-0.5
2,602,715	-		IAI47_12310	0.85	+1.3
2,602,715	-		IAI47_12310	0.85	+1.1
2,602,715	-		IAI47_12310	0.85	+1.2
2,602,715	-		IAI47_12310	0.85	-2.7
2,602,715	-		IAI47_12310	0.85	+0.5
2,602,715	-		IAI47_12310	0.85	+0.2
2,602,761	-		IAI47_12310	0.89	+1.0
2,602,774	+		IAI47_12310	0.90	-1.3
2,602,774	+		IAI47_12310	0.90	-1.2
2,602,774	+		IAI47_12310	0.90	-1.7
2,602,774	+		IAI47_12310	0.90	+0.1
2,602,774	+		IAI47_12310	0.90	-0.2
2,602,775	-		IAI47_12310	0.90	-2.1
2,602,775	-		IAI47_12310	0.90	-2.2
2,602,775	-		IAI47_12310	0.90	+1.1
2,602,775	-		IAI47_12310	0.90	-1.1
2,602,793	+				+0.8
2,602,793	+				+1.5
2,602,864	-				-1.0
2,602,874	+				-0.3
2,602,915	+				+1.5
2,602,915	+				+0.2
2,602,915	+				-2.3
2,602,916	-				-0.2
2,602,916	-				-2.0
2,602,916	-				+2.1
2,602,937	+				-1.5
2,602,938	-				-0.5
2,602,938	-				+0.1
2,602,941	+				+1.0
2,602,941	+				-2.2
2,602,941	+				+2.2
2,602,942	-				-2.5
2,602,966	-				+3.1
2,602,966	-				-0.1
2,602,966	-				+0.2
2,602,966	-				+0.4
2,603,150	-		IAI47_12315	0.34	+0.7
2,603,172	+		IAI47_12315	0.37	-0.1
2,603,172	+		IAI47_12315	0.37	-2.7
2,603,172	+		IAI47_12315	0.37	+0.2
2,603,173	-		IAI47_12315	0.38	+0.6
2,603,173	-		IAI47_12315	0.38	+0.6
2,603,173	-		IAI47_12315	0.38	+2.9
2,603,173	-		IAI47_12315	0.38	+0.7
2,603,173	-		IAI47_12315	0.38	+0.9
2,603,224	+		IAI47_12315	0.45	-1.8
2,603,224	+		IAI47_12315	0.45	+0.9
2,603,224	+		IAI47_12315	0.45	-1.7
2,603,224	+		IAI47_12315	0.45	+1.3
2,603,224	+		IAI47_12315	0.45	-0.2
2,603,224	+		IAI47_12315	0.45	+1.0
2,603,224	+		IAI47_12315	0.45	+1.7
2,603,224	+		IAI47_12315	0.45	+0.2
2,603,225	-		IAI47_12315	0.45	+0.5
2,603,225	-		IAI47_12315	0.45	+0.6
2,603,225	-		IAI47_12315	0.45	+0.2
2,603,225	-		IAI47_12315	0.45	+0.6
2,603,283	+		IAI47_12315	0.53	-2.4
2,603,283	+		IAI47_12315	0.53	-0.8
2,603,363	-		IAI47_12315	0.64	-2.0
2,603,385	+		IAI47_12315	0.67	+0.3
2,603,385	+		IAI47_12315	0.67	-0.3
2,603,385	+		IAI47_12315	0.67	-0.3
2,603,386	-		IAI47_12315	0.67	+0.3
2,603,386	-		IAI47_12315	0.67	+1.5
2,603,386	-		IAI47_12315	0.67	-1.1
2,603,386	-		IAI47_12315	0.67	-1.1
2,603,388	+		IAI47_12315	0.67	+1.4
2,603,388	+		IAI47_12315	0.67	+2.4
2,603,388	+		IAI47_12315	0.67	-0.5
2,603,389	-		IAI47_12315	0.67	+1.1
2,603,389	-		IAI47_12315	0.67	-0.1
2,603,405	+		IAI47_12315	0.69	-0.7
2,603,405	+		IAI47_12315	0.69	-1.7
2,603,405	+		IAI47_12315	0.69	-0.8
2,603,405	+		IAI47_12315	0.69	-2.0
2,603,407	+		IAI47_12315	0.70	+1.7
2,603,408	-		IAI47_12315	0.70	-0.1
2,603,551	-		IAI47_12315	0.89	+0.7
2,603,596	+				+1.3
2,603,596	+				+1.6
2,603,613	-				+0.2
2,603,613	-				+0.2
2,603,615	+				+1.0
2,603,615	+				-1.7
2,603,616	-				+1.7
2,603,650	+				+0.8
2,603,651	-				+2.3
2,603,660	-				-1.0
2,603,727	+		IAI47_12320	0.21	+0.7
2,603,727	+		IAI47_12320	0.21	-0.4
2,603,727	+		IAI47_12320	0.21	-1.6
2,603,727	+		IAI47_12320	0.21	+0.1
2,603,728	-		IAI47_12320	0.21	+0.9
2,603,748	+		IAI47_12320	0.26	+1.7
2,603,749	-		IAI47_12320	0.26	+0.1
2,603,807	+		IAI47_12320	0.38	-0.9
2,603,977	+		IAI47_12320	0.74	-0.8
2,603,977	+		IAI47_12320	0.74	+0.7
2,603,977	+		IAI47_12320	0.74	-0.6
2,603,977	+		IAI47_12320	0.74	-2.7
2,603,978	-		IAI47_12320	0.74	+1.5
2,603,998	+		IAI47_12320	0.78	-1.0
2,603,999	-		IAI47_12320	0.78	-1.8
2,604,049	+		IAI47_12320	0.89	-0.7
2,604,050	-		IAI47_12320	0.89	-0.5
2,604,050	-		IAI47_12320	0.89	-2.9
2,604,050	-		IAI47_12320	0.89	+1.0
2,604,094	-				-1.9
2,604,094	-				-0.2
2,604,094	-				-0.5
2,604,094	-				-1.1
2,604,154	+				+0.3
2,604,154	+				+1.4
2,604,154	+				+0.5
2,604,155	-				+0.8
2,604,155	-				-0.7
2,604,155	-				-0.8
2,604,239	-		IAI47_12325	0.13	+0.2
2,604,323	-		IAI47_12325	0.20	-0.6
2,604,436	+		IAI47_12325	0.30	+0.6
2,604,436	+		IAI47_12325	0.30	-1.1
2,604,436	+		IAI47_12325	0.30	+1.2
2,604,436	+		IAI47_12325	0.30	+0.0
2,604,436	+		IAI47_12325	0.30	+0.4
2,604,437	-		IAI47_12325	0.30	+1.4
2,604,437	-		IAI47_12325	0.30	-2.0
2,604,437	-		IAI47_12325	0.30	-0.2
2,604,437	-		IAI47_12325	0.30	+1.4
2,604,437	-		IAI47_12325	0.30	+1.0
2,604,438	+		IAI47_12325	0.30	+0.9
2,604,438	+		IAI47_12325	0.30	+1.9
2,604,438	+		IAI47_12325	0.30	-1.5
2,604,438	+		IAI47_12325	0.30	-0.8
2,604,438	+		IAI47_12325	0.30	-1.0
2,604,439	-		IAI47_12325	0.30	+0.8
2,604,439	-		IAI47_12325	0.30	-1.5
2,604,439	-		IAI47_12325	0.30	-0.3
2,604,439	-		IAI47_12325	0.30	+0.6
2,604,439	-		IAI47_12325	0.30	-1.8
2,604,778	+		IAI47_12325	0.59	-1.1
2,604,779	-		IAI47_12325	0.59	+0.7
2,604,779	-		IAI47_12325	0.59	+1.2
2,604,817	+		IAI47_12325	0.62	+0.6
2,604,818	-		IAI47_12325	0.63	-2.2
2,604,818	-		IAI47_12325	0.63	+1.5
2,604,818	-		IAI47_12325	0.63	+3.0
2,604,818	-		IAI47_12325	0.63	+0.7
2,604,818	-		IAI47_12325	0.63	-2.4
2,604,819	+		IAI47_12325	0.63	-0.8
2,604,819	+		IAI47_12325	0.63	+0.5
2,604,819	+		IAI47_12325	0.63	+0.8
2,604,844	-		IAI47_12325	0.65	+1.8
2,604,844	-		IAI47_12325	0.65	+0.9
2,604,888	+		IAI47_12325	0.69	+0.3
2,604,888	+		IAI47_12325	0.69	+1.2
2,604,894	+		IAI47_12325	0.69	-0.2
2,604,895	-		IAI47_12325	0.69	-3.0
2,604,959	+		IAI47_12325	0.75	-1.3
2,604,959	+		IAI47_12325	0.75	+0.3
2,604,960	-		IAI47_12325	0.75	-1.7
2,604,960	-		IAI47_12325	0.75	+1.3
2,604,984	+		IAI47_12325	0.77	-1.1
2,604,984	+		IAI47_12325	0.77	-2.1
2,605,022	+		IAI47_12325	0.80	+0.1
2,605,022	+		IAI47_12325	0.80	-2.0
2,605,023	-		IAI47_12325	0.80	-1.5
2,605,060	+		IAI47_12325	0.83	+1.3
2,605,060	+		IAI47_12325	0.83	-0.1
2,605,060	+		IAI47_12325	0.83	-2.7
2,605,060	+		IAI47_12325	0.83	+2.3
2,605,061	-		IAI47_12325	0.83	+0.6
2,605,061	-		IAI47_12325	0.83	-1.9
2,605,061	-		IAI47_12325	0.83	-0.5
2,605,069	+		IAI47_12325	0.84	-0.2
2,605,069	+		IAI47_12325	0.84	+0.9